>input_sequence_77268
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-CTATATATAGAGCTGCCCGCAGCTTTAGCCAGCCACACCACCACAACAACACAGAGCATTCTACCACCGC----ACCGC
AC-GAGTGAAGTGAGAGCTTTGCACGAAAACTTCATCAGAAACCATGAAGGGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGACTCCTCTCACACGTGAACGGTAAGCATTGCTCATGCT---CAATCGTTCTACCTGTAGT
----------TCGATCGATTTGGGCGG-----------------------------TCATATCTTGTAG----CAAGTGA
CA-TA---------CCTGATGC---CGATGTC-TTGCGTGCTTGCAGCCGATTTTTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCAAGTGTCCCCAGGGCTGCTCGGCGTGCCGCGTGGTGTCG
ACGAGCCC---CGAAATGTGGCGCTGCGCGGATATGAAATCCACCGTCGACGGCACCTGCGGTGGACCCTGCAAGAAGTA
CTGATCGGTTCATGCCGGC--------ATGATATGTTCCGCCTAAA----------------------------------
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>chr1D_1_TraesCS1D01G265800
CGGAGTGGTGCTATTCTTGCCCAGCGTCTGGCCTTGTTTAAATACAGGACGGGCGGGAGGAGCTCGGCCGGCGTTGCGTT
TAATGCCAGCCCGCTCGTGAATGGATGTGTGGCCGGAGTAGATTTCTCGGTTTCCACGCGGGTTTAGTGGAGGCGTTTGA
ATGCGGCGAGGAGGCCTGTTCAACCGGG-CGTGCAGCTGGC-GGCACCCTCGGCCGGCGCGCCGATTCAATT-GCGGAGA
CAGTGCGAGGTTGTGTCCACCCTGAACAGCCTTCAATGTGGAGCGGCGCACTCTACAGTGGAAT--GAATGCGGGCAGCT
GGT--GCCAGGA-GGGAAGCGCGCGCG--------GGAGGGGGTTTGGTGGGCCAGGGCGGTCAGAAATGGGCTTGGGAT
CAATCCGGACTCCCGGCAAACC-TCCTCG--CGTTTG-TCTCCGGTTTGCGGGAGAAAATGCGTCCAGACCGCGTCGCAG
ACCGATACGGGACCGTGTTGGATA--GCTTCCGCGGTCCGGACAACATGGTTCGG--GATTGTGGGAGGTTTGAGAGTCG
GTGTTGAAAATGCTCTTATGACTCTAAATTAGCATCACTAGATCCGTTTTAAAATGTACTTTGATACTATCAATTTGATT
TCATATATGTTAGTATTAATTTTTATGAAGTTGACCGAAATTTTAAAACTTTGACTCGTAAAAAAACTAGATGTACAATT
ATACACGGAAGGAGTATAGAGTGTGAAATTATATCTGCTGTCGTTGTCTAAATCGGTGTGCACGTGATCTGATGTGCTGG
ACATGAGTGATATCGATTCGATCGCTCCAGCGAGCGATCGCGAAGGAGCTTTTCCGTATACAATGCGTGTCAAACAATCC
ACGCCGCCTATAAAACA-AAAAAG---AAACGAGTCCAACTTTCCAAACC-------AGTAGTCAAACATCTTTATCTCC
CCACCTAACCGAATAATAACGACCGCTAGCCTAGCAGC----CCTACCAGGATTGTCAATCAAG--TTACGAAATCGACG
GCTATATATAGAGCTGCCCGCAGCTTTAGCCAGCCACACCACCACAACAACACAGAGCATTCTACCACCGC----ACCGC
AC-GAGTGAAGTGAGAGCTTTGCACGAAAACTTCATCAGAAACCATGAAGGGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGACTCCTCTCACACGTGAACGGTAAGCATTGCTCATGCT---CAATCGTTCTACCTGTAGT
----------TCGATCGATTTGGGCGG-----------------------------TCATATCTTGTAG----CAAGTGA
CA-TA---------CCTGATGC---CGATGTC-TTGCGTGCTTGCAGCCGATTTTTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCAAGTGTCCCCAGGGCTGCTCGGCGTGCCGCGTGGTGTCG
ACGAGCCC---CGAAATGTGGCGCTGCGCGGATATGAAATCCACCGTCGACGGCACCTGCGGTGGACCCTGCAAGAAGTA
CTGATCGGTTCATGCCGGC--------ATGATATGTTCCGCCTAAAATAAAATAAAAGCTCAGGCGAGATGAGCAGCGTC
ATCGTGCCTATGCGTGTGTGTGTG------------GCCAACAATGCTTATACCAGTAT-GTCGTCTCTTCGTCGCTGTG
TTTTCTCTCTCGAGAAAAAGTTGGTGTTGCTTGTTGTTCAGCTATCCGGAATATCCTCCGTGAATAAACAGCTGTAATGA
TTGTGCGTGGCTGC-CAATAATATGAGTTCTCTTGTCCACGC-ATTACATGTTTCCCGTTGTATTTATA--CTCTCCGAT
ATGATATCCATTGTTGACATGTTAAGCAGTATGTTAGATGCTAGG-TTATTTTCCACTACAAAAAATATGCTTATTTTAT
TTCATTTTATTTTTTTCGAAAAAACACTAAATCTATTCATCAAACATCGTAGCAGTACTAGCTTAGTTATCACAGACTCA
CACGAGCTGATGGGTGGCTATTTGAAATTAACCTTTCTAGTTTTTGGCACATACAATAACTATCCTACGCACTCTTTTAC
CATCTTACTACGGGCATGCCACACCTTTCATCGTGACTAATATTTTCTGATGTTTGCTAAACGGGCTAAGAAATGTGTCT
GCAATCACACGTTTGACAATTTTGTGTACCTGTACAGGAAGTATGGCTACAAACCAAACTTGCTGTTAAGAGAAATTCCT
CTAACGTTATCTCAAAACATCTATGTTTGCTCGGTTTGACTTGAATGCAAATGGTAACAGGTTCCATATTTGATCTCAGT
TTTTTCCTAAAGCATAATCAGGCTTCGAGGGAAGGTGGTTCAACATAAGATATAGTTTTGAAAAATGACAAAAGAATTCG
TAAAAGCAGCCTAATTAATGGGGATGTTATATTGTTGTACAACGAGATCATGCAATTAGGAACTTTTCGTAACCTATGAT
AATATATGTCATGCAAAAGACTTATTCCAGGAGGGTTGCAACGATGCCTTCAGTGGCACCACTGTCAACTCTTGCCATTA
GGCTTCCTTGCAAAGGAAGCGACC
>chr1D_1
CGGAG-GGTGTGATTCTTGCCCGGCGTCTAGCCTCGTTTAAATAGAGGGTGGATGGAGGGAGCTCGGCCGGCGTTGCGTT
TAATGCCGGCTCGCTCATGAACGGATGTGTGGCCGGAGTAGATTTCTCGGCTTCCACACGGGTTTAATGGAGGCGTATGA
ATGCGGCGAGGAGGCGTGTTCAGTCGGG-CGTGCAGC-GGG-GGCGCCCTCAGTCGGCGCGCCGCTTCATTG-GCAGAGG
CAGTGAGAGGTCGTGTCCGCCCTGAGCCGCCTTCAATGGAGAGCAGCGCGCTCTACAGCGGCAT--GAATGCGGGCAGCT
GAC--GCCGCACGGGATGCGCTCGCTGG--G-G-GGAGGGTTTTTTGGTGGGCCATGGCGGTCAGAAGCGGGCGTGAGAT
CGGTCTAGACT-CCCGCAAACC-TCCCCCACCTTTTG-TCTCCGGTTTGCAAGAGAAATCGCGTCCGGACCGCTCCGTGG
ACCAATACAGGTCGACGGTGGATG--GCTTCCGCGGTCC-----------------------------------------
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>chr5D_1
CGGAGTGGTGCGATTCTTGCCCGTCGTCCGACCTTGTTTAAATAGAGGGCAGACGGGAGGAGCCTGCCCGGCGTTGTATT
TAATGTCGGCCCGCTTGTGAACGGGCGTGTGGCTGGAGTAGGTTTCTCAACTTTCACACGAGTTTAATGGAGGCGTTTGA
ATGCGGCGAGGAGGCGTGTTCAGCCGGG-CGTGCAGC-GGGCGGCGCCCTCAGCCAACGCGCCGCTTCAATG-GCGAAGG
CAGCGAGAGGTCGCGTCCGCCCTAAGCCGCCTTCAATGTGGAGCGGCGCACTCTACAGCGGCAT--GACTGTGGGCAGCT
GGC--GCCGGGC-GGAAAGCGCGCAGA--AG-G-GGAGAGGTTTTTGATGGGTCAGGGCGGTCAGAAGCGAGATTGGGAT
CTATCCGGACT-CCCGTAAAAC-TCCTCG--CGTTTG-TCTTCGATTTGCGGGAGAAAACATGTTCGGACCGTGTTACGG
ACCGATATAAGACCGCGTTGGATG--ACTTCTGCGGTCCGGAC-------------------------------------
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>chr2D_2
G-GAGGGGTGTGATTCTTGCCCGGCGTATGGCCTCGTTTAAATAGA--------GGGAGGAGCTCGGCCGGCGTTGCGTT
TAATGTCGGCCAACTCATGAATTGACGTGTGGCCGGAGTAGGTTTCACGCCTTCCACGCGGGTTTAATGGAGGCGTATGA
ATGCAACGAGGAGGCGTGTTCAGCCGGGACGTGCAGC-GGCCGATGCTCTCGACCGGCGCGCCGCTTCAATG-GAGGAGG
CAGTGAGAGATCGCGTCCACCCTGAGCTGCCTTCAATGCGGAGCGGCGCGCTCTACAGTGACAT--GAACGCAGGCAACT
GGC--GCCGGGC-GGAAAGTGCGTGCGAGAT--AGGAGGGGTTTTTGGTGGGCCAGGGCGGTCAGAAGCGGGATGGGGAT
CGGACCGGACT-CCCACGAACCTTCCCCA--CTTTTG-TCTCCAGTTTGCGGGAGAAAACGCATCCGGACCATGCCGCGG
ACCGATACACGACCGCGTTGGATG--GTTTCCGCGGTCCGGACAGCGCGGTCCGGATGGTTGCGGGAGGTTTGAGGGTCG
GCGTTGGAGATGC-------------------------------------------------------------------
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>chr4D_2
-GGAGTGATGCGATTCTTGCCCGGCGTCTGACCTTGTTTAAATAGAAGACGGACGGGAGGAGCTTGCTCGGGCTTGCATT
TAATGCCAGTCCACTCGTGAACGGACGTGTAGCCGCAGTAAGTTTCTCGGCTTTCACG-GGGTTTAATGGAGGCGTTTGA
ATGCGGCGAGGAGGCGTGTTCAGCTGAG-CATGCAGC-GGGCGGCGCCCTCGACCGGCGCGCCGCTTCAATG-GCGGAGG
CACTGAGAGGTCGCGTCCGCCCCGAGCCGCCTTCAATGTGGAGCAGCGCGCTCTACAGCGGCAT--GAATGCAAGCAGCT
GAGCGACGGGTGGGAAGCGCGCGGGGGCGAG-G-GGAGTGATTTTTGGTGGGCCAGCGCGGTCAGAAGCGGGCGTGACAG
CGGTCTGAACT-CCCGCAAACC-TCCTCC--ACGTTG-TGTTCGGTTTGCGGGAAAAAACGCGTCCGAACCGCGCCGTGG
ACTGTCACATGACCGTATTGGATGTGGCTTTCGCGGTCTGAACAAC----------------------------------
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>chr3D_3
--GAGTGGTGCGGTTTTTGCCCAACGTCT-GCCTCGTTTAAATAGAGGGCGGACGGAAGGAGCTTGTCCGGCGTTGCGCT
TAATGCCGGCCCGCTCGTGAACAGACGTGTGGCCGGAGTAGGTTTCTCGGATTCCATGCGGGTTCAATGGAGGCGTTTGA
ATGCGGCGAGGAGGCGTGTTCAGTCGGG-CGTGCAGC-GGACGGAGCCCTCGGCCGGCGCGCCGCTTCAATG-GCGGAGG
CAGAGATAGGTCGCGTCCGCCCTGAGCTGCCTTCAATGTGGAGCGACGCGCTCTGCAGCGGTAT--GAATGCGTGCAGCT
GGT--GACGGGC-GGCATGCCCGCACGGGAGTG-GGAGGGGTTTTTGGTGGGTTGGGGCAGTCAGAAACGGGCGTGACAG
CGGTCCGAACT-CCCACAAAGC-TCCCCA--CGTTTG-TCTTTGGTTTACGGGAGAAAACGTCTCCGAACCGCGCCGCGG
ACTGATATAAGATCATGTTGGATG--ACTTCCACGGTCCGGACAAC----------------------------------
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>chr2B_3
--GAGTGGTGCGATTCTTGCTCGGCGTCTGGCCTTGTTTGAATAGAGGGCTGACGGAAGGAGCTTACCCGGTGTTACGTT
TAATGCTGGCCCACTCGTGAACGGACGTGTGGCCGAAATAGGTTTATTGGCTTTCACGCGGGTTTAATGGAGGCGTTTGA
ATGCGGCAAGGAGGTGTGTTAAGTCGGG-CGTGCAGT-GGGCGGTGCCCTCGACCAACGAGCCGCTTTAATG-GCGGAGG
CAGTGAGAGGTCGCGTCCGTCCAGAGCCGCCTTCAATGTGGAGCGGCGCGCTCTACAGCGGCAT--GAATGCGG-CAGCT
GGC--ACTGGGCGGGAACGCGCACGGACGAG-GAAGGAGGGGTTTGGGTGGACCAGGGCGGTCAGAAGTGGGCGTGACAG
CGGTCCGGACT-CCCACAAAGC-TCCCACACGTTTGTCTCTCCGGTTTGCGGGAGAAAATGCGTCCGGACAGCACCGCGG
ACCGATACAAGCCCACGTTGGACG--GCTTCCACGGTCCTGACAACGCGGTACGGACGGTTGCGGGAGGTTTGAG-----
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------------------------
>chr2B_5
----GTGGTGCGATTCTTGACCGGTGTCTGGCCTCGTTGAAATAGAGAGCGGGCCGGAGGAGCTTGCCCGATGTTGTGTT
TAATGCCGGCCCGCTGGTGAACGAACGTGTAGCCGAAGTAGCTTTCTCAGTTTTCATGCAGGTTTAATGCCGACGTTTGA
ATGCGGAGAGGAGGCCTGTTCAACCGGG-CGTGCAGT-AGGCGATGCCCTCAGCCGACACGCCTCTTCAATG-ATGGAGG
CAATAAGAGGTCGCGTTCG-CCTGAGCTGCCTTCAATGTGAAGCGGTGCACTCTACAGCGGCATATGAATGTGGGCGGCT
GGT--GACAGGA-GGGAAGCGCACGCGAAAG-GAGGAAGGGGTTTTTGATGGGCAGTGCAGTCAGAAGCGGGCGTGATAG
CAGTCCGGACT-CCCGCAAACCTTCCCCA--CATTTG-TCTCCGGTTTGCGGAAGGAAACACGTCCGAACAGCACTGCGG
ACGGATACAGGACCGCATTGGTTG--AATTCCGTGATCCGAACAACA---------------------------------
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>chr1A_30
-----------------------------GGCCTTGTTTAAATACAGGACGAACGGGAGGAGCTCGGCCGGCGTTGCGCT
TAATACTGGCCCGCTCGTGGACGGACGTGTGGCCGGAGTAGGTATCTCGGCTTCCACGCGGGTTTAATGGTGGCGTTTGA
ATGCGGTGAGGAGGCGTGTTCAACCA-GACGTGCAGC-GGGCGACACCCTCGGCCGGCGCGCCTCTTCAATTTGTGGAGA
TAGTGAGAGGGCGTGTCCGCCCTGAGCCGCCTTCAATATGGAGCGGCACGCTCAAGAGTGGCAT--GAATGCGGGTAGGT
GAC--GCCGGGG-GGAAGCATGTGCAGAAGGAT-------GGGATTGGTGGACCAGGGCAGTCAGAAACGGGATTGGGAT
CGGTCCGGACA-CCCGCAAATA-TTCTCG--CGTTTG-TCTTCAGTTTGCGGGAGAAAATGCGTCCAGACCGCGCAACGG
ACCGATACAGGATGGTGTTGGATA--GTTTTCGCGGTCCGGATAGCACGTTTCAAATGATTGCGGGAGGTTTGAGAGTCG
ACGTTGCAGATGCTCTTATGGCTCTAAATTAGCATCACTAGATCCGTCTTGAAATGTACTTTGATACTATCAATTTGATG
TCATATATTTTATTATTATTTTTTATAAAGTTGATCGAAATTTTAAAACTTTGACTCGTAAAGAAACTAGATGTACAATT
ATACACGGAAGGAGTAT--AGTGTGAAATTATATCTGCTGTCGTGGTCTAAATCGGTGTGCACGTGATCTGATGTGCTGG
TCATGAGTGATA--------------------------------------------TATACAATGCATGTCAAACAATCC
ACGCCGCCTATAAAACAAAAAAAG---AAACGAGTCCAACTTTCCAAACC-------AGTAGTCAAACATCTTTATCCCC
CCACCTAACCAAATAATAACGACCTGTAGCCTAGCAGC----CATAGCAGGATTGTCAATCAAG--TTACGAAATCGACG
CCTATATATAGAGCTGCCCGCAGCTTTAGCCAGCCACACCACCACAACAACAGAGAGCATTCTACCACCGC----ACCGC
AC-GAGTGAAGTGAGAGCTTTGCACGAAAAGTTCATCAGCGACCATGAAGGGCACCAAGCTCGCGGCGATCCTCATCCTC
CAGGCCGTCCTGGTCATGGGAGTCCTCTCACACGTGAACGGTAAGCAGTGCTCATGCT---CAATCGTTCTACCTGTAGT
----------TCGATCGATTTGGGCAG-----------------------------TCATGTCTTGTACGTAGTAAGTGA
TATTA---------CCTGATGC---CGATGTC-TTGCGTGCTTGCAGCCGACTATTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCCGGGGTCGACGTCTGCGACGACGCCCACCCCAAGTGCCCCAAGGGCTGCTCGGCGTGCCGCGTGGTGTCG
ACGAGCCC---CGAAATGTGGCGCTGCGCGGATATGAAATCCACCGTCGACGGCACCTGCGGTGGGCCCTGCAAGAAGTA
CTGATCGGCTCATGCCAGC--------ATGATATGTTCCGCCTAGAATGAAATAAAAGCTCAGACGAGATGAGCAGCGTC
ATCGTGCCTATGCGTGTGTGTGTGGCCAACA-----------AATATGTATACCAGTAT-GCCGTGTCTTCGTCGCTGTG
TTTTCTCTCTCGAGAAAAAGTTGGTGTTGCTTGTTGTTCAGATATCCGGAATATCCTCCGTGAATAA------GTAATGA
TTGTGCGTTGGTGG-CAATAATATGAGTTCTCTTGTCCACGC-GTTACATGTTTCCCGTTGTATTTATATCCTCTCCGAT
ATGATATCCATTGTTCACATGTTAAGCAGTATGTTAGATGCTTTGCTTATTTTCCCCT--AAAAAAGATGCTTAGCTTAT
TTTATTTTATTTTTTAG--AAAAAACTTCAATCTATTTATCAAACATATAC-TAGTACTAGCTTAATTAACACATACTCA
CACGAGCTGATGGGCGGCTATTTGAAATTTACCTTTCTAGTTTTTCGCACATACAATAACTATTCTACGTACTC--TTAC
CATCTTACTATGGGCATGCCACACCTTTCATCCTGACTAATATTTGCTGATGTTTGCTAAACGGGCTAAGAAATGTGTCT
GCAATCACACGTTTGACAATTTTGTGTACCTGTATAGGAAGTATGGCTACAAACCAAACTTGTTGTTAAAAGAAATTCTT
GTAATGTTATCTCGAAACATCTATGTTTGCTCGGTTTGACTTGAATGCAAATGGTAAAAGGTTCCATATTTCATCTCAGT
TTTTTCCTAAAGCATAATCATGCTTCGAG-AAAGGTGGTTCAACATAAGATATAGTTTTGAAAAATGACAAAAGAATTCG
TAAAAGCGGACTAATA----GGAATGTTATATTGTTGTACAATGAGATCATGCAATTAGGAATTATTCGTAACCTATGAT
AATATATGTCATGCAAAAGACTTATTCCAGGTGGGTTGCAACGATGCCTTCAATAGCACCAATGTCAACTCTTGCCGTTA
GGCTTCCTTGCAAAGGAAGCGA--
>chr1B_833
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--------------------------------------------------------TATACAATGCATGTCAAACTATCC
ACGCCGCCTATAAAAC-AAAAAAG---AAACGAGTCCAACTTTCCAAACC-------AGTAGTCAAACATCTTTATCTCC
CCACCTAACCGAATAATAACGACCGCTAGCCTAGCAGC----CCTAGCAGGATTGTCAATCAAG--TTACGAAATCGACG
CCTATATAT--------CCGCAGCTTTAGCCAGCCACACCACTACAACAACAGAAAGCATTCTACTCCT-------CCAC
AC-AAGTGAAGTGAGAGCTTTGCGCTGAAAGTTCATCAGCAACTATGAAGGGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGAGTCCTCTCGCACGTCAACGGTAAGC--TGCAGATGCTGCTCAGCCATTCTACATGCTCC
TCAACAAAGCTCGATCGATTGCCTTTTCGTGATCGCGGTGAGGGATCGAGGTCTGTGTTTATGG------------GTGA
TGCTA---------TCTGATGC---CGATGTCTTTGCGTGCGTGCAGCCGACTTCTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCAAGTGTCCCAAGGGCTGCTCGGCGTGCCGCGTGGTGTCG
ACGAGCCC---CGAAATGTGGCGCTGCGCGGATATGAAATCCACCGTCGACGGCACCTGCGGTGGACCCTGCAAGAAGTA
CTGATCGGTTCATGCCGG------CATATGATATGTTCCGCCTAAAATTAAATAAAAGCTCGGACGAGATGAGCAGCGTC
ATCGTGCCTATGCGTGTGTGTGTGACCAACA-----------AATATGTATACCAGTAT-GTCGTGTCTTCGTCGCTGTG
TTTTCTCTCTCGAGAAAAAGTTGGTGTTGCTTGTTGTTCAGCTATCCGGAATATCCTCCGTGAATAAACACCTGTAGTGA
TTGTGCGTGGCTGC-CAATAATGTGAGTTCTCTTGTCCACGCAGTTACATGTTTCCCGTTGTATTTATATACTCTCCGAT
ATGATAT---TTGTTGACGTGTTAAGCAGTATCTTACT---------------------------AGATGCTTAGCTTAT
TTTATTTTGCC----AG--AAAAACTTTCAATCTATTCATCAAACGTCACGGTAGTTCTAGCTTAGTTATCACATACTCA
CACGAACTGATGGGCAGCTATTTGAAATTTACCTTACTAGTGTTTGGCACATACAATAACTATCCTATGCACTCCTTTTC
CATCTTACTACGGGCATGCCACACCTTTCATCCTGACAAATATTTTCGGATGTTT-CTAGACGGGATAAGAAATGTGTCT
GCAATCACACGTCTGACAATTTTGTGTGCCTGTATAAGAAGTATGA-TACAAACCAAACTTGTTGTTCAAAGAAGTTCTT
GTAACGTAATCTCAAAACATCTATGTTTGCTCGGTTCAACTTGAATGCAAATGGTAAAAGTTTCCATATTTGATCTCAGT
TTTTTCCTAAAGCATAATCATGCTTCGAGGAACGGTTGTTCAGCATAAG--ATAGTTTTGAAAAATGACAACAGAATTCA
TAAAAGCGGCCTC----ATGGGAATGTTATATTGTTGTACAATGAGATCATGCAATTAAGAATTCTTCGTAACCTATGAT
AATATATGTCGTGCAAAAGTCTTATCCCAGGAGGATTGCAACGATGCCTTCAATGGCACCAGTGTCAACTCTTGCCATTA
CGCTTCCTTGCAAAGGAAGCGA--
>chr1B_844
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-------------------------------------------------------------------TGTCAAACAATCC
ACGCCGCCTATAAAAA-A--CCCTGGAAAACGAGTCCAAGTTTCCAAGCCAGCTGCTAGTAGTCAAACATCTTTATCCCC
C-AACTAACCAGATAATGGACATAGCGATCGCAGCATCGCAGCCGAGAAAGCTTGCCAATCAACTTTTACGAAATCGGCG
CCTATATATAGAGCTGCTCGCAGCTTTAGCCAGCCACACCACTACAACAGCAGAAAGCATTCTACCACTAGACCGACCGC
ACCAGGTGAAGTGGGAGCTTTGCGCTAAGGGCTCATTAGCAACCATGAAGAGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGGATCCTCTCACACGTGAACGGTAAGC--TGCTGATGCT---CAATCATTTCACCTCTTCC
TAAACAAAGCTCGATCA-------TTTCGTGATGCCCAGAGGGAAGGGGAGGGTTCTCGTCTCGTCTTA----TGAGTGA
CA-TATTATCTGATTCTGATGCCGTCGGTGTC-TTGCGTGCGTGCAGCCGACTATTTCCCCAAGTGCTGCAACAATTGCA
GGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCCAGTGCCCCAAGGGCTGCTCGGCCTGCCGCGTGGTGACG
CCCAGCCCTCACAAGACGTTCCGGTGCGCCGACATGAAGAGCACCGTCGACGGCACCTGCGGCGGGCCATGCAAAAAGCA
CTGATCCGTTCAGGGCTTCAGGCTCAGACGAGGTGTGCCGCCTAAAAT------AAAGCTCAGATGAGATGAGCA--GTC
ATGGTGCCTATGCTTGTGTGTGGGTCGTGCTATACGGCCAACAGTATGTATAATGCTATCGTCGTGTCTTGGTCAATGTG
TTTTCTCTCTCGAGAAAG-GCTGGTGGTGCTAGTACTTGT--TCACCTA-----CCTCCGTGAATAAACACATGTGATGA
TTGTGTGTGCCTACTCAATAACATGAG-----------------------------------------------------
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>chr1A_854
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-----------------------------------------------------------------------------TCC
ACGCCGCCTATAAAAA-AAACCCGGGAAAACGAGTCCAAGTTTCCAAGCTAGCTGCTACTAGCCAAACATCTTTATGCCC
CCAACTAACCAAATAATGCACGTGGCGATCGCAGCATCGCAGCCGAGGCCGCTTGCCAATCAAC--TTACGAAATCGACG
CCTATATATAGAGCTGCTCGCAGCTTTAGCCAGCCACACCACTACCACAG-----AGCATTCTACCACTAGACCGACCGC
AC-AGGTGAAGTGAGAGCTTTGCGCTAAGGGTTCATCAGCAACCATGAAGAGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGGATCCTCTCACACGTGAACGGTAAGC--TGCTGATGCT---CAATCACTTCACCTCTTCC
TAAGCAAAGCTCGATCA-------TTTCGTGATGCCCCAGAGGGAGGGGAGGTCTCTCGTCTCGTCTTA----TCAGTGA
CA-TATTATCTGGTTCTGATGCCGTCGGTGTC-TTGCGTGCATGCAGCCGACTTCTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCCGGGGTCGACGTCTGCGACGACGCCCACCCCCAGTGCCCCAAGGGCTGCTCGGCCTGCCGCGTGGTGACG
CCCAGCCCTCACAAGACGTTCCGGTGCGCCGACATGAAGAGCACCGTCGATGGCACCTGCGGCGGGCCATGCAAAAAGCA
CTGATCCGTTCAGGGCTTCAGTCTCAGACGAGGGGTGCCGCCTAAAAT------AAAGCTCAGATGAGATGAGCA--GTC
ATGGCGCCTATGCTTCTCTGTGGGTCGTGCTATACGGCCAACAATATGTATACTGCTATCGTCGTGTCTT-GTCAATGTG
TTTCCTCTCTCGAGAAAG-G-TGGTGGTGCTTGTACTTGTGTTCACC----TATCCTCCGTGAATAAACACATGTGATGA
TTGTGTGTGCCTACTCAATA------------------------------------------------------------
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>chr1D_992
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------------------------------------------------------------------------AATCGACG
CCTATATATAGACCTGCTCGCAGCTTTAGCCAGCCACACCACTACAACAGCAGAAAGCATTCTACCACCAGACCGACCGC
AC-AGTTGAAGTGAGA--TCTGCGCTAAGGGTTCATCAGCAACCATGAAGAGCACCAAGCTCGCGGCGATCCTGATCCTC
CAGGCCGTCCTGGTCATGGGGATCCTCTCACACGTGAACGGTAAGC--TGCTGATGCT---CAATCATTTCACCTCTTCC
TAGACAAAGCTCGATCA-------TTCCGTGATGC-CCAGAGGGAGGGGAGGCTTCTCGTCTCGTCTTA----TAAGTGA
TA-TATTATCTGATTCTGATGCCGTCGGTGCCTTTGCGTGCGTGCAGCCGACTATTTCCCCAAGTGCTGCAACAACTGCA
GGTCCTTCTCGGGGGTCGACGTCTGCGACGACGCCCACCCCCAGTGCCCCAAGGGCTGCTCGGCCTGCCGCGTGGTGACG
CCGAGCCCTCACAAGACGTTCCGGTGCGCCGACATGAAGAGCACCGTCGATGGCACCTGCGGCGGGCCATGCAAGAAGCA
CTGATCCGTTCAGGGCTTCAGGCTCAGACGAGGTGTGCCGCCTAAAAT------AAAGCTCAGATGAGATGAGCA--GTC
ATGGTGCCTATGCTTGTGTGTGGGTCGTGCTATACGGCCAACAATATGTATACTGCTATCGTCGTGTCTTGGTCAATGTG
TTTTCTCTCTCGAGAAAG-GCTGGTGGTGCTTGTACTTGT--TCACC----TAT--------------------------
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------------------------
>SNPs
-----------S--------------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------------------S--------------------------S---------------
-----S-----S-------------S-S---------------------------------S------------------
--------------------------------------------------------------------------------
-----------S--S---------------------------------------------------------------S-
--------S--------------------------------------S--------------S-----------------
-S----S-S-----------S--------------------------S--S----------------------------S
--------S---S-----S-------S-------S---------------------------S-----------------
-----------------SS-------------------------S-----------------------------------
S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
S---------------------------------------------------S---------------------------
------------------------------S--------S----------------------------------------
---------------------S-------------------------S--------------------------------
-------------------------S------------------------------------------S----S------
---------------------------------------------------S----------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
------------------------------------------------S--------------S----------------
---------------------------------------------SSS-----------------S--------------
----------------------------------------------------------------------S---------
-------------------------------------------S------------------------------------
------------------------------------------SS-----------S--SS------S-------SS----
--S------------SSSS------SS-S-------------------SSS-S---------------------S-----
--------------S--------------S--------------------------------------------S-----
--------------------------------S-----------------------------------------------
----------------------------------S---------------------------S------S--------S-
S--------------------------------------------------------S----------------------
--------------------S---------S-------------------------------------------------
-------S-------SS-----S-------------------S-------------------S-S---------------
----------------------------------------------------S--------S------------------
----------------------SS
>forward_268
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--------GGTTGTGTCCACCCTGAACA----------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_1222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTCCTCTCACACGTGAACGG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>forward_1093
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CCACACCACCACAACAACAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_2613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTGGCACCACTGTCAACTCT--------
------------------------
