>input_sequence_77253
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATGGCAGAA
AGCACAGCAATAGCACCACCACCACAACCAATGGCACCACCGCAACCAGTGGAGGAAAACGCAACGGCGGCACCGCCGCA
ACCAATGGCACCACCG---------------------------------------CAACCAATGGCGGAAAACGCAACGG
CGGCACCACCG---CAACCAATGGCGGAAAACGCAACTGTCGTTGTGGTGGTGCCACCACCACCGCCAGACGGCACCACG
ACATTCCTCTGCCTCATCCTCGCCTTCTTCATCCCTCCCCTCGGCGTTTTCCTCAAGTACAAATGTGAGGTAAGTGTGCG
CTCACCCACATCATCTCAAGGTTGTCGATGTGACACAATAGCTTCTATTTTTTTAAC-GTGTGTGACACAATAGCTTTAC
CATTGCCATGGATATATGCATGCATTTCAACATTCTGGGGCTCCTGATCGGATCGATTCTTGCTGGTGTTTCTGCTGCAG
ATTGAATTCTGGATCTGCCTCATCCTAACATTCTTGGCCTACGCGCCGGGCATCATCTACGCCGTCTGGGTGATCGTAAA
GTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr2D_1_TraesCS2D01G597300
TGTAAATTTGAATCTATTAAAAGTCCAGTTTATGATGAGTTTGCATATTTGTTTTCCTTGTGATGAGGTCTTTCAAATAT
GGCCACTTTAAACTCATTTGAAAAAATTCATCTTGTTTCAATTGTTAAACTTGTAAAAAAAAGGATAAATTCACCAAGTT
TCAAATACTAAAACCCTAAACCTGGACTACTAAAACTCTAA-------------ACCCTAATCCTAAGGCCTAAACCCTA
AGAGCAGATGGAACCTGGTGAAACTTGGCAAAAACTTAATATTACTATTATCAAGTTTGAATATTGGTATAATTTGCATC
TGTC-AAATGTATTCATGTATGATCTTGTTTCAAAGCCCTCATCGCCAGGAACATGAATATGAAAACAAAATATAAATTG
GACTTTTGGTTCATAAAGATATAATAAAATTCAAATTAAAAGTCAAAAGAAAAAGCATGGGAAATGAGATGGGTGGACCA
TGCAATCTCTGAAGAAGGAAAACATCCATACATGGGATACCCCAAACATAATCAAAAGCTAAGCCATGCATGCAAAGCAG
ATAATCATGTATGCACGAGAATCTCCAACAAAATCCGATATCCCATGCATGGTAGAGTTTAATTTCTCTTTCACCACGGT
CGTCGACAATTTGTGTTCATTTGTTTTCCCTCTGTTTTTTATTATGCATCCCA-------ATGTGAGCAACACCATCCGA
TAAAAAGGTTTGCCCAA-TGACCCATTCATGCGAAAGGTGCGCGGCGCGCATGAAGCCACGCCCC-----TAGTCCTTCT
CCATCTCAAAGTAGCAG----AAAGCCGCACGTGCATGTAATACGCACCCTTATTTTGGTTCTGCCTGAGACGAGTCATT
CGTCCCCATTTCGGTGAAGCGGGGAAGCCAAAGCTATTGCCCGCATCCCCGCGGCTGCTTCTTCCCACGTCCACACAACC
ACAAGAAACGTCGGAGACTCGCCGGTGATCGATCCCCATCACTCGCCGGCGATTGGTCTGGACGCGACACAATGGCAGAA
AGCACAGCAATAGCACCACCACCACAACCAATGGCACCACCGCAACCAGTGGAGGAAAACGCAACGGCGGCACCGCCGCA
ACCAATGGCACCACCG---------------------------------------CAACCAATGGCGGAAAACGCAACGG
CGGCACCACCG---CAACCAATGGCGGAAAACGCAACTGTCGTTGTGGTGGTGCCACCACCACCGCCAGACGGCACCACG
ACATTCCTCTGCCTCATCCTCGCCTTCTTCATCCCTCCCCTCGGCGTTTTCCTCAAGTACAAATGTGAGGTAAGTGTGCG
CTCACCCACATCATCTCAAGGTTGTCGATGTGACACAATAGCTTCTATTTTTTTAAC-GTGTGTGACACAATAGCTTTAC
CATTGCCATGGATATATGCATGCATTTCAACATTCTGGGGCTCCTGATCGGATCGATTCTTGCTGGTGTTTCTGCTGCAG
ATTGAATTCTGGATCTGCCTCATCCTAACATTCTTGGCCTACGCGCCGGGCATCATCTACGCCGTCTGGGTGATCGTAAA
GTAGAGATTGCACCCATGAACGTTAGGAAAACAGGGATTTGATTCTTCTCTTCGAATCCCAGCCATACTAGAAAAGAAAG
ACTTCACAGAGGCAAGAACAATTTGGGAAATCCTAGGGGGAAATGATGCAGTTGGAATGGGGCGACTAAAGGATTTGTCG
CCTCAGTTTTAGGCTATGTATATTTTTCACCTTCCATGTTTTGGTGCTGAGAATTGGTTATTGTTATCTGGGAAATTAAC
AATAACAGGTTGTGTTGTCATTGACATATATCGTGGCTGCAAAATTCCAGAGAAACATGTCATTCTCTCTTTTTCAAAAA
CTGACTTAGGGGGGCATGATATGTTCATTACAACTCAAGTGGCCTGGGACACTAACATATCAAGGTATGGCGTGCACGTA
CGTTAGTGCCGATGAAGTCACTTGTTCGTTTGAGGTGTAAAGACAAAATTAATGTGTTACCCACTG----------CCAT
CCCGCAATTTTCCGACCCAAACTCTCGTTTCTCATTTCTATTCTACTACAACACATTTTATAGAGCCAGATTTGTTCCAA
GGT-AAATATTATTGAGGTGAGGTGCATACAGTTCAACAAAGAAATTCAAACCACAGAATTACAATTAAAAATCAAGTTG
TATTCCAAAAAGGAAATCCTAAATACACCAAC--ATATATAGTTCAATCACAAGCACCACAAACTATTGTTCGCCCGTAC
CTGCAAATGCACAAAATGCATGTCAATTAAATTGAAAATGCTCAAACCATAAGCAAACAAGGAAATAAACAAGTAAACTT
GTGCACTCTTCGGTCACTGGCAAAGGGCCATACCACACCCTCCCACTCTTTTTCACTTGGCCATGACACTCTCCGTGTCA
CCATGACACCATGGCCGGCCAACCTCACCTTCAGAGACAATGAATGCAGCTCGCTTTGCTCACTAACTGGCCGAGTGATC
AAAGTCTGAATCCTAACACGCACAGACAGTGTTCAAGACGAAACATGCAAGATTGAT
>chr2B_79
ATGGCCACT-----------------------------------------------------------------------
------TTTAAACTCATTTCGAAAATTTCATTTTGTTTCAGCTTTTAAACTTGTAAAAAAAAGGATAAATTCACCAAGTT
TCAAATACTAAAACCCTAAGCCTGGAATACTAAAACTCTAAACCCTAGACCCAAACCCTAATCCTAAGTCCTAAACCCTC
AGAGCAGATGGAACTTGGTGAAACTTGGCAAAAACTTAATATTACTATTATCAAGTATGAATATTGGTAAAAAATACATT
TGTCAAAATGTATTCAAGTGTGATCTTGTTTCAAAGCCCTCGTTGCCAGGAACATGAATATGAAACCAAAATATAAATTG
GACTTTTGGTTCATAAAGATATAATTAAATTCAAATTAAAATTCAAAAGAAAAAGCATGGGAAATGAGATGGGTGGACCA
TGCAATCTCTGAAGAAGAAAAACATCCATACATGGGACACCCCAAACATAATCAAAAGCTAAGCCATGCATGCAAAGAAG
ATAATCATGTATGCACGAGAATGTCCAACAAAATCCGATATCCCATGCATGGTAGAGTTTAGCTTCTCTTTCACC-----
--------ATTTGCGTTCATTTGTTTTCCCTCTG-TTTTTATTATGCATCCCAAAAACGGATGCGAGCAACACCATCCGA
TAAAAAGGTTTGCCCAAATGACCCATTCATGGGAAAGGTGCGTGGCGCGCATGAAGCCATGCCCCTGATATAGTCCTTGT
CCATTTCAAAGTAGCAGAATTAAAGCCGCACGTGCATGTAATATGCACCCTTATTTTGGTTCTGCCTGAGACGAGTCATG
CGGCCCCATTCCCGTGAAGCGGGGAAGCCAAAGCTATTGCCTGCATCCCCGCGGCTGCTTCTTCCCACGTCCACACAACC
ACAAGAAACGTCGGGGACTCGCCGGTGATCGATCCCCATCACTCGCCGGCGATCGGTCCAGACACGAC-CAATGGCAGAA
AGCGCAGTGATAGCACCACCACTACAACCAATGACACCACCGCAACCAATGGCAGAAAACGCAACGGAGGCACCACCACA
ACCAATGGCACCACCGCAACAAATGGCGGAAAACGCAACGGCCGCACCACCACCACAACCAATGGCGGAAAACGCAACGG
CGGCACCACCACCACAACCAATGGTGGAAAACGCAACGGTGGTTGTGGTGGTGCCACCACCACCGCCAGACAGCACCACA
ACATTCCTCTGCCTCATCCTCGCCTTCTTCCTCCCTCCCCTCGGCGTTTTCCTCAAGTACAAATGCGAGGTACGTGCGCG
CTCACCCACATCATCTCAAGGTTGTCGATGTGACACAATAGCTTCTATTTTTTTTTAAGTGTGTGCCACAATAGCTTTAC
CATTGCCATGGATATATGCATGCATTTCAACATTCTGGGGCTCCTGATCGGATCGGTTCTTGCTGGTGTTTCTGCTGCAG
ATTGAATTCTGGATCTGCCTCATCCTAACATTCTTGGCCTACGCGCCGGGCATCATCTACGCCGTCTGGGTGATCGTAAA
GTAGAGATTGCGCCCATGAACGTTAGGACAACAGGGATTTGATTCTTCTCTTCGAATCCCAGACATAGAAGAAAAGAAAG
ACTTCACAGAGGCAAGAACAATTTGGGAAATCCCAGGGGGAAATGATGCCGTTGGAATGTGGCGACTAAAGGATTTGTCG
CCTCAGTTTTAGGCTATGTCTCTTTTTCACCTTCCATGTTTTGGTGCTGAGAATTGGTTATTGTTATCTGGGAAATTAAC
AATAACAGGTTGTGTTGTCATTGACATAT--CGTGGCTGCAAAATTCCAGAGAAACATGTCATTCTCTCTTTTTCAAAAA
CTGACTTAGGGGGGCATGATATGTTCATTACGACTCAAGTGGCCTCGGACACTAACATATCAAGGTATGGCGCGCACGTA
CGTTAGTGCCGATGAAGTCACTTGTTCGTTTGAGGTGTAAAGACAAAATTAATGT----------G----------CCAT
CCCGCAATTTTCCGACCCAAACTCTCATTTCTCATTTCTATTCTACTACAACACATTTTATTGAACCACATTTGTTCCAA
GGT-AA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr2A_527
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAACCATGCATGCAAAGAAG
ATAATCATGTATGCACGAGAATCTCCAACAAAATCCGATATGCCATGCATGGTAGAGTTTAATTTCTCTTTCACCACGGT
CGTCGACAATTTGT-----------------------------------CCCA-------ATGTGAGCAACACCATCCGA
TAAAAAGGTTTGCCCAA-TGACCCATTCATGCGAAAGGTGCGCAGCGCGCAGGAAGCCACGCCCCTAATATAGTCCTTCT
CCATCTCAAAGTAGCAG----AAAGCCGCACGTGCATGTAATATGCACCCTTATTTTGGTTCTGCCTGAGACGAGTCATG
CGTCCCCATTCCGGTGAAGCGGGGAAGCCAAAGCTATTGCCCGCATCCCCGCGGCTGCTTCTTCCCACGTCCACACAACC
ACAAGAAACGTCGGGGACTCGCCGGTGATCAATCCCCATCACTCGCCGGCGATTGGTCTGGACGCGAC-CAATGGCAGAA
ACCGCAGCGATAGCACCACCACCACAACCAATGGCACCACCGCAACCAGTGGAGGAAAACGCAACGGCGGCACCGTCACA
ACCAATGGCACCACT-----------------------------------------------------------------
----------G---CAACCAATGGCGGAAAGCGCAACTGTCGTTGTGGTGGTGCCACCACCACCGCCAGACGGCACCACG
ACATTCCTCTGCCTCATCCTCGCCTTCTTCATCCCTCCCCTCGGCGTTTTCCTCAAGTACAAATGTGAGGTAAGTGTGCG
CTCACCCACATCATCTCAAGGTTGTCGATGTGACACAATAGCTTCTATTTTTTTAAC-GTGTGTGACACAATAGCTTTAC
CATTGCCATGGATATATGCATGCATTTCAACATTCTGGGGCTCCTGATCGGATCGCTTCTTGCTGGTGTTTCTGCTGCAG
ATTGAATTCTGGATCTGCCTCATCCTAACATTCTTGGCCTACGCGCCGGGCATCATCTACGCCGTCTGGGTGATCGTGAA
GTAGAGATTACGCCCGTGAACGTTGGGACAACAGGGATTTGATTCTTCTCTTCGAATCCCAGACATAGAAGAAAAGAAAG
ACTTCACAGAGGCAAGAACACTTTGGGAAATCCCAGGGGGAAATGATGCCGTTGGAATGGGAGGACTAAAGGATTTGTCG
CCTCAGTTTTAGGCTACGTCTCTTTTTCACCTTCCATTTTTTGGTGCTGAGAATTAGTTATTGTTATCTGGGAAATTAAC
AATAACAGGTTGTGTTGTCATTGACATAT--GGTGGCTGCAAAATTCCAGAGAAACATGTCATTCTCTCTTTTCCAAAAA
CTGACTTAGGGGGGCATGATATGTTCATTACGACTCAAGTGGCCTGGGACACTAACATATCAAGGTATGGCGCGCACGTA
CGTCAGTGCCGATGAAGTCACTTGTTCGTTTGAGGTGTAAAGACAAAATTAATGT----------GTTACCCACTGCCAT
CCCACAATTTTCCAACCCAAACTCTCGTTTCTCATTTCTATTCTACTACAACACATTTTATTGAACCACATTTGTTCCAT
GGTAAAATATTATTGAGGTGAGGTGCATATAGTTCAACAAAGAAATTCAAACCACAGAATTACAATTAAAATT-AAGTTG
TATTCCAAAAAGGAAATCCTAAATACACAAACATATATATAGTTCAATCACAAGCACCACAAACTATTGTTCGCCCGTAC
CTGCAAATGCACAAAATGCATGTCAATTAAATTGAAAATGCTCAAACCATAAGCAAACAAGGAAATAAATAAGTAAACTT
GTGCACTCTTCGGTCACTGGCAAAGGGCCACACCACACCCTCCCACACCTTTTCACGTGGCCATGACACTCTCCGTGTCA
CCATG--------GCCGGCCAACCTCACCTTCAGAGACAATGAATGCAGCTCGCTTTGCTTACTAACTGGCCGAGTGATC
AAAGTCTGAATCCTAACACGCACAAACAGTGTTCAAGACGAAACATGCAAGATTGAT
>SNPs
SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------------SS----S-----S--------SS-S------------------------------------
-------------------S------S-----------------------------------------S----------S
--------------S-----------------------------------------S------------S--SS-S---S
----------------S--S---------------------S-S---------------------S--------------
-------------------------S---------------S--------------------------------------
-----------------S-------------------S---------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-----------------------------------S
----------S---------------------------------------------------------------------
--------------S-----------------------------------------------------S-----------
---S----S--------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-----------S----------------S---------------------------------S----SS-----------
---------------------------------S---------------S------------------------------
-------------------S-S----------------------------------------------------------
-----------------------------SS-------------------------------------------------
-------------------------------S----------------------------------------S-------
-------------------------------------------------------SSSSSSSSSS---------------
-------------------------------------------------------------S--S---S-----------
-----------------------------S-----------------------------------------S-S------
----------------------------S---------------------------------------------------
---------------------------------------------------------------------S----------
------------------------------S---------------S-S-------S-----------------------
-----SSSSSSSS-----------------------------------------------S-------------------
------------------------S--------------------------------
>forward_844
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GCCGCACGTGCATGTAATAC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_2064
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTGCCATCCCGCAATTT
TCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
