>input_sequence_77247
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-------------------------------------------------------------------------------T
CAACGAACAC--GAGTTGCTTGTAATTTACAAGGTGATCAGAGGCAGCAAAGAA------------ACACACACACACAC
ACAGAGATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTGCCGTCGGTGGCCA
GAAGCAGCAGCGGAAGCC------GGAGCGCGGCACGTTCAGCTGCGGCTTCCAGATGCCTCTGCACTACCCGCGGTATA
GGAAAGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCCTGTCACCGGCGAC
GTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGTATTGATTCGCCCTC-----------TTA
CATATTGCCACTTGGAGCAGAGGCCGATCAGCGAGTGAGCGCCTAGTAGAGACTGATCAGCAATGGCAGCAGC---AACA
TCACGT----CC------CCATGTATGAAGAAGACATCGTGTCCATATTATTTTATCTACTCTCTCCGTAAATTAATATA
GGAGTGTTTATATC------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G371000
TTGCTCGAACTCTAGTCTCCCTTAACTAATA--GATGAGACAAATCTTTTGCCTCCACTTTTTTTTTTTTTTTTTGCAAT
CAGCTTAAATTTCCAGTCTCATTCTAAGCTCCTAGGTCCCTAAAAGACCGTTTTGCCCCTGACGACGTTCTATCCAAAGG
CATGGACCAGAGGTTATTGTACCATAAACATGGAA---------------------------------------------
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----------------------------CATACATATCCTCATGTTTTGCATCCCACATTCATCAAACACATAGATAGAT
CAATGCGCACAATCCCTTTTCTTTTTGCAAGGAAAATGCACACTATAATCATGTAACAGATGTGCCAAAACTTGCTTTTG
AG----------------------------------------------AACAATCCCATCCATGTCTTTGTCCTCAGATC
TGTAGTTTCGGTGTACTAACACTTGCGATCTTGCGCC-------------------------------------TAGTGA
ACAGATTTTTTACTGTAAAAGAAAAAAAACTAGTGGACAGATTTTTTTTTTGAATTGTTTGGATTGCTTACCACATGTTT
CATGTGGTAGTGGACAGATTTGGTCTACACCTTTGC--------------------------------------------
----------------------ATGCCGCACAGGTAACTCTACACGGCCACCCATGACCCATCAATCACCATCCCATGAT
CCTCGAAGCTTCTGTTCCTGCAGCCACGCCGTCGCGTGCAAGAGATCCAACTGGTAAGTCCATTAATCGTTACCTCCTAA
TCATGCAGCTGGTCTGCAAGTGTTTGCTTCGTGTAGCCACATCCTTGATCAATCATGTGGGATAGCGTAGGATCGATCGT
GTGGCGTGTGCTCCG-CTGACTCCGACAGCGACGCCGGCGAGAGCTAGGGA--GTGGACGCCCTGAGGTCGACGGCGCTG
CCTCACCGGCGAGGACGGAGCACGCTGTTGTCAGAATTTATTACTCTGCTTGATTGCACA--------------------
CTGCAGTTCATTTCTTTCAGATAATG-TGGTTGGCTCGAGTTACCGCTCTGGTCAGGCAAGACGGTGGATT---------
--------------------ATTATTCCTCTATCTCAC-ACCATCTATAAAA-CCCTTCCATCAGCTAGCACTTCCTTCT
CAACGAACAC--GAGTTGCTTGTAATTTACAAGGTGATCAGAGGCAGCAAAGAA------------ACACACACACACAC
ACAGAGATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTGCCGTCGGTGGCCA
GAAGCAGCAGCGGAAGCC------GGAGCGCGGCACGTTCAGCTGCGGCTTCCAGATGCCTCTGCACTACCCGCGGTATA
GGAAAGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCCTGTCACCGGCGAC
GTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGTATTGATTCGCCCTC-----------TTA
CATATTGCCACTTGGAGCAGAGGCCGATCAGCGAGTGAGCGCCTAGTAGAGACTGATCAGCAATGGCAGCAGC---AACA
TCACGT----CC------CCATGTATGAAGAAGACATCGTGTCCATATTATTTTATCTACTCTCTCCGTAAATTAATATA
GGAGTGTTTATATCATTAAAGTTTACGGAGGGCGTATCATCTATCATAATCTCCAACCCCCCATAGACAAATACAGTATA
ATCTCCAATTCTCCATAGACAAATATTTTC---------TTGGAGCAGTTCTGATGTGCCTACGTTTACGTGTAAGCAGT
GGAAGAATGTGTTTTTTTTATCTTCTTATACATGTAAATTAATGCTTTCTGTGTACGTCCGACGTTGATT-TTTTGCTGT
GCAGTTGTGATCGTTTTGCACAGGCTCCGGTGTCCTAAAAATCTACTTTTTTTTAAAGAAAAGACATACATCCAATTTTA
TAAATAAAGCCATACGGCAAAGTACCGAACAACCTCACCACAACCAGAGACGGAAAAACAGTATTGGCCAACAACCAACG
GCGCACCAGCCAGACAATACAGAGCATGCAGACCCAGGCACAAAACAAAACGAAAAGAGGCGCGCAGGCTAACAACCTAC
CCCTAGAGCTCAAAAGACGACACTAAGCTTGAGCATGAGCACCATCAGCTGGAGACGACAGAAGATTGGCAGAAGCCCGT
TTTTTAGAGATCAACATCTCCAGAGCGTCCCTATCAGCAGGTTTAGTCAATGATTTCCACTGCTATAAAAAGATAGACAT
ATTAAACATAAAATCAACAAGTTTGTTAGGGAATGGTCCATAAAGCCCAGCACAATGAGCCCAAACCGACCCAAAACACC
CGCTTAACCAGGCCCTGTAAGCCAGCGGAAAGCCCACATAGCTCATCGAAAGAATCGGGGGGCCAGGAGACATGAAGCCA
TGATCAGACGCAACACCAGGCTAACTTACAAAACACAACCAAAGAAGATGTGACTGGCATCCTCCAGTTCAGAGCAAAGA
GAAACAAGATCAGAGCCAGGACCATCACGCTTCCGAATTTGATCGGCCGAGGGCAATCGAACCCTAAAGGCATGCCAAAG
AAAGATCTTGATTTTGGGAGGCAACTTTGCCACCCAAATCAGCTTGAATTTAGAGGTAAGCAGG
>chr7B_1
TTGCTCGAACTCTATTCTCCCTTAATTAATATAGACGAGACAATTTTTTTGCCTCCATTTCAA---TTTTTTTTTGCAAT
CAGCTTAAATTTCCACTCTCGTTCTAAGCTCCTAGGTCCCTAAAAGACCATTTTGCCCCTGACTGCCTTCTATCCAAAGG
CATGGACCAGAGGTTATTGTACCATAAACATGGAACATACATATGATTTTTTTTGAAACTATGATGATTTTTATAGCAAA
TTCGGAAACTATACACCCTAATGCAGAAAAATCAAAAGTATCACCCCGTCGGCCGCCTGTTGGCCGAAGAGGGACTTTTC
GGCCAATCGCTAGCCAAAAAAGACTTTTCAGCCAACAGTTGGCCAAAGAGTCCCTCTTCGGCCAACAGGAGGCCGAAAAG
TGGTCTTCGGCCAACACCTGCTTTACTGTTTTAGAAAATTCATATCAATTAGGATTTTTAGTATTTTAATTTGATTCTTT
TTGCATTAGATTAGAAATTTTATGAAGTTTCTGTAGATATCAAGTTTCACTAGATTTGAAAGTTTGAATTTGAATTTTCA
TGAATTTGCTCAAATCACTAGATTGCCTACAATTTGAGCTAGGAGTATTTTTTCGGATGATTCTTTTTGCTATTGGTTCT
TTGTGACATTGTTTATCAGTAGTAATTAATTGGCGAATTTCATAATTATTTAGAATTAGGTTTTTATGAAAAGAGTTCTG
TTTTAGTGTTTTATAGGTTTTGTGCTATTTCTTTTAATTTTAATTGCTTTAAATTGTTTTCTTTAGTTTTTTTAACATAT
TTTTGTTGTTTCTGTTTAGTTATCAGTAGCTATTTTATTTGTAGTATTTTTTTGTATTTTATTTCTTTTATCCTACTAGA
AAACTTGTTTTGAGCTTCATAGGAGTTTATATTTAAAAGTGCCTTATAAATCATGTACAACCATTGCCATTTTATACATG
AAAAAACAAGTATTTTCCCGCAATCTTTTTCCCTCCATTTTATACACTTATGACTTCTCTCAGACATTGTTTCACACTCC
ACCAGCAGCACCGACGCAGGAGACACAGACCGTGTCAGACGATGTTATCTACGGTCGTGGACACCATGAGGCTCATTTTA
TAAGTTGAGAAGTGAAGATGGCGAGAAAGAAGATGACGGGAAAGAAGATGGCGGGAAAGAAAATGGCGGGAGAGAACGGC
GGGAGAAAATGGAGGGAGAGAATGGCGGCAAATAAAATGACGGAAAGAAAATGGTTAGAGAAAATGGCGGATGGCGGGAG
AAATTGACGGCAAAGAAAATAGCGGGATAAAATGGAGGGAAAGAACGGTGGAAAAGAAAATGAAGGATAAAATAAATAAA
ATACAAAAATATATATACTAATAACTTAACAGAAACTAAAAGAATATGTCAAAAAATAAAGAAAACAATTTAAAGCAATT
AAAATTAAAAGAAATAGCATAAAACCTATAAAACACTAAAACAGAACAGTTTTCGTAAAAAACTAATTTTAAATAATCCT
AAAATGCACCATTTAATTATTACTGATAAACAAAGTCACAGAGAACCAGTAGCAAAAAGAATCATCTAAAAAAATACTCC
TATCTCAAATTATAGGCAATCTAGTGATTTGAGCAAATTCATGAAAATTCAAACTCAAACTTTCAAATATAGTCAAACTT
GATATCTACAGAAACTTCATAAAATTTCTAATCTAATGCAAAAAAGAATCAAATTAAAATACTAAAAATCCTAATTGATA
TGAATTTTCTAAAACAGGAGAGCAGGTGCAGGCCGAAGACCACTTTAGAGTTGGACGAAGAGGGACTCTTTGGCCAACAG
TTGGCCGAAAAGTCCTCTTTGGCCGAAAAGTCCTCTTTGGCCAACGGTTGGCCAAAAGTCTCTCTTTGGCCTGAAAAGTG
CCTCTTCGGCCAACAGGAGGCCGACGGGGTGATACTTTTGATTTTTATGCATTAGGATATATAGTTTCCGAATTTGCTAA
AAAATCATCATAGTTTCAAAAAAAAATCCATACATATCCTCATGTTTTACATCCCACATTCATCAAACACATAGATAGAT
CAATGCGCAC--------------------------TGCACACCAAAATCATGTAACAGATGTGCCAAAACTCGCTTCTG
AGAACAATCCCATCCATGTCTTTTTTTTCCCGCAAAAAAAAAAAAAAAAACAATCCCATCCATGTCTTTGTCCTCGGATC
TGTAATTTCCGTGTACTAACACTTGCGATCTTGCGCGCAATGAACTTCCGGGAATCATCATACAAGGAATCAAGTAGTGA
ACAGATTGTTTACTGTAAAAGAAAAAAAAAC-------------------------------------------------
-------TAGTGGACAGATTTGGTCTACACCTTTGCTTTCCAAGTGCCAAACTGCGTCCCAACAACCGAAGGCTCGCAAA
GAAATTCTTGGAGCACAGTTTCATGCCGCACAGGTAACCCCACACGGCCACCCATGACCCATCAATCACCGTCCCATGAT
CCTCGAAGCTTCTGTTCCTGCAGCCACGCCGGTGTGTGCAAGAGATCCAACTGGTAAGTCCATTGATCGTTACCTCCTAA
TCATGCAGCTGGTCTGCAAGTGTT-GCCTCGTGTAGCCACATCCTTGATCAATCATGTGGGATGGCGT------------
-------GTGCTCCG-CTGACTCCGACAGCGACGCCGGCGCGAGCTAGGGGAGATGGACGCCCTGAGGTCGACGGCGCTG
CCTCACCGGCGAGGACGGAGCACGCTGTTGTCAGAATTTATTACTCTATTTGATTGCAAGTGCCCGATCATTCGGATCAC
CTGCAGTTCATTTCTTTCAGATAATGGTGGTTGGCTCGAGTTACCGCTCTGGTCAGGCAAGACGGTGGATT---------
--------------------ATTATTCCTCTATCTCAC-ACCATCTATAAAA-CCCTTCCATCAGCTAGCACTTCCTTCT
CAACGAACAC--GAGTTGCTTGTAATTTATAAGGTGATCAGAGGCAGCAAAGAA------------ACACACACAG----
AGAGAGATGGGATCCTTGGGCCCTGCAGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCACGGCTGCCGTCGGTGGCCA
GAAGCAGCAGCAGAAGCA------GGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATACCGCTGCACTACCCGCGGTACA
GGAAGGCGGACTACGAGGCGATGCCGGAATGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCCTGTCACCGGCGAC
GTCGAGGAGAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCGGCCAGCATTGATTCGCCTTT-----------TTA
CATATTGCCACTCGGAGCAGAGGCCGATCAGCAAGCTAGGGCCTAGCAGAGACTGATCAGCAATGGCAGCAGC---AGCC
TCACGT----CC------CCATGTATGCAGAAGACCTCGTGCCGATATTATATTCCTATCTATCACTAATC---------
-----------------------------------------------------------------------------ATA
ATCTCCAATTATCCATAGAAAAAATATGTTTCTTGGAGGTTGGAGCAGTTCTGATGTTCTTACATGTAAGCAGTAC---T
GGAAGAAGGTGTTGTTTCTGATTTTCATACGTATAATA-TAATGCTTTCTGTGTACGTCCGACGTTGATCGTTTTGCTCT
GCAGTTCTGA----------------------------------------------------------------------
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>chr7A_506
TCTAA---------------------------------------------------------------------------
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-------------CACAGTTCCATGCCGCGCAGGTAACCCTACACGGCCACCCATGACCCATCAATCGCCGCCCCAAGAT
CCTCGAAGCTTCTGTTCCTGCAGCCACACCGTTACGTGCAAGTGATCCAACTGGTAAATCCATTAATTGTTACCTCCTAA
TCATGCAGCTAGTCTGCAAGTGTT-GCTTCGTGTAGCCACATCCTCGATCAATCATGTGGGATAGCGTATGATCGATCGT
GTGGCGTGTGCTCGGCCTGACTCCGACAGCGACGCCGGCGCGAGGTAGGGGAGGTGGATGCCCTGAGGTCGACGACGCTG
CCTTACCGGCGAGGACGGAGCACGCTGCTGTTGGAATTTATTGCTTCACTGCGTTGCTGGAGCACGCTCCAACATTTGCT
GTGTCA--------------ATGATT-TGGTTGGCGATTCGACTAGACATCGATCTATCGGTTGCACCAGGAAAGGTCTA
GAGTTTTATGAGTCTGATTGATTATTCCTCCATCTCAC-ACCATCTATAAAA-CATTTCCATCAGCTAGCACTTCCTTCT
TAACAACACCAAGAGTTGCTTGCAAGTTACAAGGTGATGAGAGGCAGCAAGGAAACACAAACACACACACGCACAC----
AGAGACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAACGGCGGCAAGGTGGCCGTCGGCGGCCA
GA------------AGCAGCAGCAGA---GCGGCACGTTCAGCTGCGGCTTCCAGATGCCGCTGCACTACCCGCGGTACA
GGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCCTGTCACAGGCGAC
ATCGAGGAAAAGAGGAGGTTCGCCATGGGCGCCTTGCTCTGGCCCGGCCAGTATTGATTCACCTTGTTACATGAGTATTA
CATATTTCCATTCGGAGCAGAGGCCGATCAGCAAGCTACCGCCTAGCAGAGACTGATCAGCAATGGCAGCAGC---AACA
TCACGT----CTCCATGACCATGTATGAAGAAGACCTCGCGATATTATATTTCTATCT----------------------
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>chr7D_945
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---------------------TTATTCCTCTACCACATTTCGATCTATAAAAGCCCTTCCAGCCTCTGGCACTCCCTTCT
CAGCCACAGCTCCAGTTGCTTGGAAGTTACAAGGCGTTCAGAGGCGGCAACCAA--------------ACCTACACAC--
ATACACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGGCCAGCGGCGGCACGGCGGCCGTCGGCGGCCA
GC------------AGCC------GGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCACTACCCGCGGTACA
GGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGAGAGTACGGCCTCCCCGTCGCCGGCGAC
GTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTATTGACTCTCCTTC-----------TTA
CATCTCGCCACTCGGAGCAGAGGCCGGTCAGCGAGCCAGCGCCTGGCAGAGACTGATCAGCAGTGGCAGCAGCATCAACA
TCACGT----CC------CCATGTATGAAGAAGAC---------------------------------------------
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>chr7B_945
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---------------------TTATTCCTCTACCACATTTCCATCTATAAAAGCCCTTCCAGCCTCTGGCACTCCCTTCT
CAGCCACAACTCCAGTTGCTTGGAAGTTACAAGGCGTTCAGAGGCAGCAACCGA--------------ACACACACCC--
ACAGACATGGGATCCTTGGGCCCTGCCGTGAGCGTGAGCATGGCCAAGG------------------CCGTCGGCGGCCA
GCAGCAGCAGC---AGCC------GGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCACTACCCGCGGTACA
GGAAGACGGACTACGAGGAGATGCCGGAGTGGCGCATCGACTGCCTGCTCCGGGAGTACGGCCTCCCCGTCGCCGGCGAC
GTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTATTGACTCTCCTTC-----------TTA
CATCTCGCCACTCGGAGCAGAGGCCGGTCAGCGAGCCAGCGCCTGGCAGAGACTGACCAGCAATGGCAGCAGC---AACA
TCACGTACATCC------CCATGTATGAAGAAGACCTCGTG---------------------------------------
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>chr7A_946
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----------------------TATTTCTCTACCACAC-TCCATCTATAAAAGCCCTTCCAGCCTCTTGCACTCCCTTCT
CAGCCGCAGCTCCAGTTGCTTGCAAGTTACAAGGCGTTCAGAGGGGGCAACCAA--------------ACACACAG----
ACAGACATGGGATCCTTGGGCCCTGCCGTGAACGTGAGCATGGCCAAGGCCAGCGGCGGCACGGCGGCCGTCGGCGGCCA
GC------------AGCAGCAGCAGGAGCGCGGCACGTTCAGCTGCGGCTTCCGGATGCCGCTGCACTACCCGCGGTACA
GGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTCGACTGCCTGCTCCGGGAGTACGGCCTCCCCGTCGCCGGCGAC
GTCGAGGACAAGAGGAGGTTCGCCATGGGCGCCTTCCTCTGGCCCAGCCAGTACTGATTCGCCTTC-----------TTA
CGTCTTGCCACTCGGAGCAGAGGCCGGTCAGCAAGCTAGCGCCGAGCAGAGACTGATCAGCAATGGCAGCAGA---AAGA
TCACGTACGTCC------CCATGTATGAAGATGGCGAT------ATATATTCTTATCTACTCCCTCCGTAAA--------
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>SNPs
--------------S----------S---------S-------S-S-----------S--SSSSSS--------------
---------------S----S----------------------------S-------------SS-S-------------
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------------------------------------------------S-------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSS-------S-S--------------------------S----S--
---------------------------------------------------------------------------S----
----S----S--------------------------S-------------------------------------------
-------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------------------------------------------------------------------
--------------------------------------S-------------------------------S---------
--------------------------------S-----------------------------------------------
------------------------S--------------------------------------------S----------
----------------------------------------S---------S-----------------------------
-----------------------------------------------S----------SS--------------------
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------------------------------------------------------------------------------SS
--------------------------------------------------------------------------------
-----------S------------------------------------------------S-----------------S-
----S---------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------S----------------------SS---------S---------------------------------
-----------------------------------S-----S-S----------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
----------S--------S---SSS-S-S---------------------------S-S---S-S--S-SSSS-SSSS-
-------S-----S---S-SSS--SSSSSSSSSSS-S-S------------------------------S--------S-
------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2096
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----------------------------------------------------------------------------AGAT
CAATGCGCACAATCCC----------------------------------------------------------------
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>reverse_4181
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--------------------CAGAGCGTCCCTATCAGCAG----------------------------------------
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