>input_sequence_77237
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--------------------------ATGGATCCAGATCCACCATCGCCGGACACCGACGACTCTTCTTCTCTG------
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-------------------TGGAAACTCGCGGTGTACCTCATCGTCGCCTTCGCGGTCCTCCTGCTCGCATGTCTCGTTA
AGTGTTGCTGCAAGAGGCGCGCTCGCGCTGAGGCGGAGGCGGCGGCAG------AGGCAGAGGAGGCCGCTGCCGCTGCC
ACAGCCGCTCGGCTGCGAGAATGGCGGTGGC---------------GGCTGGAATCCCGCCGCCACCATGACGAGGTGCA
GCTCCCCA---------------------GCGCCCGCGCTGCCAACCCGGCGGCCCGCCTCCCGGCGTTCAAGTACAACC
GGTCCCTGAAGCACAACGTGACGGGTGTAGGAGAGGAAGCGGCGACGTGCTCGGTGTGCCTCGGCGTGTTCCAGCTAGGG
GAGACGGTGCGGCTGTTGCCGGCATGCCTGCACCTATACCACGTGGAGTGCATCGACCCGTGGCTGGACGCGCATTCGAC
GTGCCCGATCTGCCGCTCAGACGCCGACCCGACGATGGACGGCGCTCGGCTACCTCCCGTTTAA----------------
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>chr7A_1_TraesCS7A01G347000
CGTACGTGCTGGCGAGCAGACATATGCGTGCGTGCTGGTGGTGCGCAGTTCACCGCCGTCGCCCCAGTGCACGCCCGTGC
CTCGTCCGAGCTTGAGGTGCACGCACGGTGACCGAGCTCGAGGAGCCACACACCATTGCCAAGCTCCAGGCC-------T
CCTACCCCGCCTACGCCGCCAGGCACTAGCGCCTCCAGGGAAGCAGAGGCATGGCTACCAACGTCCACCGTC--------
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------------------------------------GCTGCTCCACGTCTCCATGCCCTGGACTCCATCCTCGTTAAGTC
TTGCACTGGAGCACCATGCTTATCCCCGACGACCAGGAGACATAGCTCTGCACTTTGCACGATGAGGGACGCCATCGTCG
TTAAGTCTTGCACTGAAGTCGCGGTGATGTGGCAGTCAAACCCAGAAGACATGTTAAGTTTTAGTCAAAATTATGTCCAC
ATCAGATGAAAACCACCGGAAGCGGTACGAGGGACCAAACATATCCGGTTTGAAGAGTTGAAGGACTAAGTTTTGCCGGT
TTTAAAATTAAAAGATCAAACTGAGACTTTTAAAAAAGTTGAGGGATGAAAAATATACTTTTTTCTATACAAAATAACAT
GTGTTCGCAGACTGGTCTATTGTCTCTGTTGTCTCCGAACATATACGGGAGAAAATTTACGGGTCAGCTTGAAAATACCC
TTAGTTGTCAATTGTCATCTGTGACGTTCCGTTCGCACGGACGAGAAACGACCCTGGCAATGTTAATCCTACCGGTGGGA
GCG-GGTTGTTTATCGCGCATAGACAAGGAGAACC--GTGCATGCTCCGTCACTTCTTTTGTCTTCACTA-A--TGCATT
TGGCAATAAATCAGCAATCGAGGTTAACCATCTCGCCCACAGAATGGGGCTTCTTGGTAGCCTCCATTGACCCACGTACA
AATTCTCTCGAGACTAGCGTATAACACGATGCAGCAA---------ACAATACGTGAAAATTAGCTATACCAGTTAGTTG
TAGGCGCGCTTGCACGGTTTGCACCAATGGATCCAGATCCACCATCGCCGGACACCGACGACTCTTCTTCTCTG------
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-------------------TGGAAACTCGCGGTGTACCTCATCGTCGCCTTCGCGGTCCTCCTGCTCGCATGTCTCGTTA
AGTGTTGCTGCAAGAGGCGCGCTCGCGCTGAGGCGGAGGCGGCGGCAG------AGGCAGAGGAGGCCGCTGCCGCTGCC
ACAGCCGCTCGGCTGCGAGAATGGCGGTGGC---------------GGCTGGAATCCCGCCGCCACCATGACGAGGTGCA
GCTCCCCA---------------------GCGCCCGCGCTGCCAACCCGGCGGCCCGCCTCCCGGCGTTCAAGTACAACC
GGTCCCTGAAGCACAACGTGACGGGTGTAGGAGAGGAAGCGGCGACGTGCTCGGTGTGCCTCGGCGTGTTCCAGCTAGGG
GAGACGGTGCGGCTGTTGCCGGCATGCCTGCACCTATACCACGTGGAGTGCATCGACCCGTGGCTGGACGCGCATTCGAC
GTGCCCGATCTGCCGCTCAGACGCCGACCCGACGATGGACGGCGCTCGGCTACCTCCCGTTTAATCTTTTTTCCGGCCGG
AGGTTTACATACGCGCATAGTGTGCTAGGGTAAACATTTGGTCGTGTAGGGAGGGTAAAATTCATGC-TTTCTTTTAACA
CAGTATAATTAAAGTTA------------------------------CTCACATGCATTTATTTTGAACTCCCTGTGACT
ATGG----------------------------------------------------------------------------
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------TTTCCAGATGATTTA-----------------------------------------------------------
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------------------------------------------------------------------------------AC
TTTTCAGGAGTCATAGCATCTCTAGCAGACCCCTTAAAACTGCGACCCGTATAAATATTTTACGGGCCGAGAAAAATGCA
TTATAAAGGCTGATTTTAGTTGCGTCTGAACAGAGCCCGTATAATCAACCCGTAAA--AAAATATTCTTTAAATATACCA
TCTTCTTCCTCACGCCTTTTCCATCTCGACCTTCATCCCCTCGGCGTGTGCTGATTCTGCCTCCGCGACCGTCTTCTCGT
GCTCGCCACCGAGCGTGACCGGGCCGGGGCCAGCAACAGTGCAGACTGCATCAGCAGCCACCGCCGCCGAGGCATTCGTG
TCCGACTCGCATGAAGCTAGCTAGCTAGCTAGCAATTCGAGCGGACGGGAGCAGACAGAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACGGTTGGGGTGGGCGGCCGGCGGCCGGGGGGAGGGGGGGGGGACGGGGGGACGGGT
GGGCGCGGTGGTCGGGACGAGCACGATGGCCGGGATGACCGGCCGGCGGCCGGGGACGGGCGGACGGGAGCCATTCATAA
AGGTTCCGATGGCAATTGGATTCTCCCCGACGGTCT
>chr3D_1
CGTACGTGCTGGCGAGCAGACAGATGCGTGCGTGCTGGTGGTGCGCCGTTCACCGCCGTTGCCCCAGTGCACGCCCGTGC
CTTGTCCGGGCTCGAGGTGCACGCACGGTGACCGAGCTTGAGAAGCAACACACCATTGCCAAGCTCCAGGCCTCCTACGT
CCTACCCCGCCGACGCCGCCAGGCACTAGCGCCTCCAGGGAAGCAGAGACATGGCTACCAACGTCCACCGTCCACTAGTA
GAAAAACGGCCAGCCTACTGGGCCGGCACGGCCTGCATACGACTAGAAACCCAATCTCTAGTTGGGCCAGGATGCAGGCC
CGTACGGCCCAGTAGGCCCCACAGGGCAGAAGACTTGCAATAGGCGCACAAAGGCCTGCTTAGAGAGGAGCTCGACACGG
TAGCCGCGGCGGGGCTTATAAACCGGTGCGAGCTTCTCTCAACTAGCGAGGTGGGACTAAACATTATGTACTGCGGGTGG
CAGCGCACCACCTTTAGTACCGGTTGGTGGCTCCAACCGATACTAAAGGGGGGGGGGTCTTTAATACCGGTTGGAGCCAC
CTACCCGTACTAAAGGCCACCACCTTTAGTACCGGTTGGTGGCTCCAACCGGTACTAATGACCCCCCCCTTTAGTCCACC
AACCCGTACTAAAGGCCATCACCTCTTTAGTACCGGTTCGTGGCACGAACCGGTACTAAAGGTTCGCCACGAACCGGTAC
TAATGAGCGCCGCCCGCCTGGCCGTTGGAACCGGCATTAATGGTCACATTAGTGCCGGTTCAATACTAAACCGGGACTAA
TGAGTTTCACATTAGACCCTTTTTCTATTAGTGGTCGCTGCTCCATGCCTCCATGCCCTGGACTCCATCTTCGTTAAGTC
TCGCACTGGAGTGGAGTCTTGCAC------------------------------TTGCACGATGAGGGATGCCATCCTCG
TTAAGTCTTGCACTGAAGTGGCGGTGACGTGGCAGTCAAACCCAGATGACGTGTCAAGTTTTAGTCAAAACCATGTCCAC
ATCAGATGAAAACCACCAGAAGCGGTATGAAGGACCAAATATATCCGGTTTGAAGAGTTGAAGGACTAAGTTTTGCCGGT
TTTAAAGTTGAGGGACCAAACCGAAACTTTCAAAAGAGTTGAGGGACAAAAAATATATTTTTTCCAT-------------
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>chr7B_681
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-----------TTGTCATCTCCAACTTTCCATTCGAACGGACGAGGAACGACCCTGGCAATGT-AATCCTACCGCTGGCA
GAGTGGTTGTTTATCGCGCATAGACAAAGAGAACC--GTGCATGCTCCGTCAATGATTTTGTCTTCACTATATGTGCATT
TGGCAATAAATCAGCAATCGAGATTAACCATCCCGCCCACAGGATGGGGCTTCTTGGTAGCCTCCGTTGACCCACGTACA
AATTCTCTCAAGGCTAGTGTATAACACTATGCAGCAA---------ATAATACGTGAAAATTAGCTAAACTAGTTAGTCG
TAGGCGCGCTTGCACGGTTTGCACTAATGGATGCAGATCCGCCATCGCCGAACTCCTACGACTCTTCTTCTCTG------
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-------------------TGGAAAATCGCGGTGTACCTCATCGTCGCCTCCGCGGTCCTCCTGCTCGCATGTCTCGTTA
AGGGTTGCTGCAAGAGGCGCTCTCGCGCTCAGGCAGAGGC------AG------AGGCAGAGGAGGCCGCTGCCGCTGCC
ACAGCCGCTCGGCTGCGAGAGTGGCAGTGGC---------------GGCTGGAATCCCGCCGCCACCGTGACGAGGTGCA
GCTTCCGA---------------------GGGCCCGCGCTACAAACCCGACGGCCCGCCTCCCGGCGTTCAAGTACAACC
GGTCCGTGAAGCACAACGTGACGGGTGAAGGAGAGGAAGCGGCGACGTGCTCCGTTTGCCTGGGCGTGTTTCAGCTAGGT
GAGACGGTGCGGCTGTTGCCGGCGTGCATGCACCTGTACCATGTGGAGTGCATCGACCCGTGGCTGGACGCGCATTCTAC
GTGCCCGATCTGCCGCTCGGACGCCGACCCGACGATGGACGGTGCTCGGCTACCTCCAGCTTAATCTTTTTTCCGGCCGG
AGGTTTGCATACGCGCATAGTGTGCTAGGGTAAACATTTGGTAGTGTAGGGAGGGTAAAATTCATGCATTTCTTTTAACA
CAATACAATTAAAGTTTTTTTTTTGCGGGGTAGTACAATTAAAGTTGCTCACATGCATTTATTTTGGACTCCTTTTGACT
ATTAGTCAATGTGTACGTGCAATGCACGTTAATTTGAAAGTATATTAAGTGCATGTGAATATTAAGTAGAATATTATTTG
CGTGTTATTATGTGATTAGCACTATTTTTGGCATAAAATTTAATTGTACGCTAAACATGTTGAACGGTCGACATTGAAGC
CGTCTAGGTCGTTGGATTGACATGATTTGATGGCCGAGATTATTTGGATTTGCCCCTTTGGGTCTTTTTATATTGGTATA
GATGGTTTTTCAAATGATTTACTCCCTCCATTTTTATTTACTCTGCATATTAGAGTTGACTGAAGTCAAACTTCGTAAAA
TTTGATCAAGTTTATGAAAAAAATATAAACACTTACAATAACAAATCTATATGATGTGAAAGTACATGTTAATATTTTTG
TCTATAAACATTGTCAAAGTTTATAAAGCTTGACTTTAACCAAAGCTAATATCCGGAGTAAATAAAAACATCAGAAGTAC
TTCTCAGTAGTGGGAGCATCTCTAGCAAACCC-TTAAAACTGCGACCCATACAAGTGTTTTACAGACCGAGAAAAACACA
TTATAAGGATCGATTTTAGCTACGGCCGGACATAGCCCGTATAATCAACCCGTAAACAAAAATATTCTCTAAATATACCA
TCTTTTTCTCACGTACTA-TCCATCTCGACCTTTGTCCCCTCGGCGTGTGCGCATCCTGCCTCCAGGACCGCCTCCTTGT
GCTCGCCACCGAGCGTGATCGGGCTGGGGCCAGCAGTAGTGCCGACTGCAGCAGCAGCCGCCGCCGCCTAGGCGTTCACG
GCCGACTCGCATGA----AGCTAGCTAGCTAGCAATTCGAGTGGACGGAGAGC---------------------------
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>chr7D_681
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-----------TTGTCATCTCCAACTTTCCATTCGAACGGACGAGGAACGACCCTCGCAATGT-AATCCTACCGCCGGCA
GAGTGGTTGTTTATCGCGCATAGGCAAAGAGAACC--G--CATGCTCCGTCACTGATTTTGTCTTCACTATA-GTGCATT
TGGCAATAAATCAGCAATCGAGATCAACCATCTCGCCCAGAGGATGGGGCTTCTTGGTAGCCTCCGTTGACCCACGTACA
AATTCCCTCAAGGCTAGCGTATAACACGATGCAGCAA---------ACAATACGTGAAAATTAGCCATACCAGTTAGTTG
TAGGCGCGCTTGCACGGTTTGCACCAATGGATCCGGATCCACCATCGCCGGACTCCGACGACTCTTCTTCTCTC------
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-------------------TGGAAAATCGCGGTGTACCTCATTGTCGCCTTCGCGGTCCTCCTGCTCGCATGTCTCGTTA
AGGGTTGCTGCAAGAGGCGCGCTCGCGCTGAGGCGGAGGC------AGAGGCACAGGCAGAGGAGGCCGCTACCGCTGCC
ACAGCCGCTCGACTGCGAGAGTGGCGGTGGC---------------GGCTGGAATCCCGCCGCCACCATGACGAGGTGCA
GCTCCCCA---------------------GCGCCCGCGCCACCAACCCGGCGGCCCGCCTCCCGGCGTTCAAGTACAACC
GGTCCGTGAAGCACAACGTGACGGGCGGAGCAGAGGAAGCGGCGACGTGCTCCGTGTGCCTCGGCGCGTTCCAGCTAGGG
GAGACGGTGCGGCTGTTGCCGGCATGCCTGCACCTATACCACGTGGAGTGCATCGACCCGTGGCTGGACGCGCACTCGAC
GTGCCCAATCTGCCGCTCGGACGCCGACCCAGCGATGGACGGCGCTCGGCTACCTCCCGTTTA-----------------
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>chr7B_716
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----------------------------------------------AACGACCCTGGCAATGT-AACCTTACGTTGCGGT
--GT-GTTGTTTATCGCGCATAGACAAGGAGAACCATG--CATGCTCCGTCCCTGATTTTGTCTTCATTACA--TGCATT
TGGCAATAAATCACCATTCGAGATTAACCCTCTCGCCCACAGGATGA-GCTTCATGCTAGTCTCCGTTGATTCACGTAAG
AATTCTCTCAACACTAGTGTATAGCACGACGCTGCAAGCCCTGCAAACAATACGTCATTAGCTCTT-----AGTTAGTTT
GCAGTTGCAG--------TTGCACCAATG------GTTCCACCATCAACGAAGTCCATCGACTTTCCTCCTCCGCTACCG
CTACCGCTACCGTGGGATTATGACCCGCCGGGGTATGAATCACCGCCGATAAGTCCCTGGTATCCGCCACCGCCGCCGTC
TTCAGATTCAGATAATGGATGGGTACTCGTGGTATTGCTCGTCTTCGTCTTCGTAGTCTGCATGATCGGA-GTCATTTTA
AGGGTTTACCGCA-----GCACGCAAGCTCATGCTGAGGC------AG------CGGCTGAAGCAGCTGCGGCCGCTG--
----CCGCTCGAACGCGAGAGTTGCCGCGGC------CGCTGCCGGGGCTGGAATCCCTCTGGCAACGTGATGAGGTGCG
GCTGCCGAGAACCCGTGCTACCAACTCGGGGGCCCGCGCTACAAACCCGACGGCCCGCCTCCCGGCGTTCAAGTACAACC
GGTCCGTGAAGCACAACGTGACGGGTGGAGGAGAGGAAGCGGCGACGTGCTCCGTTTGCCTGGGCGTGTTTCAGCTAGGT
GAGACGGTGCGGCTGTTGCCGGCGTGCATGCACCTGTACCACATGGAGTGTATCGACCCGTGGCTGGACGCGCATTCTAC
GTGCCCGATCTGCCGCTCGGACGCCGACCCGACGATGGACGGCGCTCGCCCACCTCCCGTTTAATCTTTTT---------
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>chr7D_716
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----------------------------------------------AACGACCCTGGCAATGT-AACGTTACCTTGCGGT
--G-GGTTGTTTATCGCGCATAGACAAGGAGAGCCATG--CATGCTCCGTCCCTGATTTTGTCTTCATTACA--TGCATT
TGGCAATAAATCATCATTTGAGATTAACTCTCTCACCCAAAGGATGA-GCTTCATGCTAGTCTCCGTTGATTCACGTAGG
AATTCTCTCAACACTAGTGTATAGCACGACGCTGCAA-CCCTGCAAACAC-----CATTAGCTCTT-----AGTTAGTTT
GCAGTTGCAG--------TTGCACCAATG------GTTCCACCATCGACGGGCTCCATCGACTTCGCTCCTCCGCTACCG
CTACCGTGGGAT---GATTATGACCCACCGGGGTATGAATCACCGCCGATACGTCCCTGGTATCCGCCACCGCCGCCGTC
TTCAGATTCAGATAGTGGATGGGTACTCGCGGTATTGCTCGTCTTCGTCTTCGTAGTCTGCATGATCGGA-GTCGTTTTA
AAGGTTTACCGCA-----GCAAGAAAGCTCACACTGAGGC------AG------CGGCAGAAGCAGTCGCTGCCGCTG--
----CTGCTCGAGCGCGAGAGTTGCCGCACCCGCGGTCGCTGCCGGGGCTGGAATCCCTCTGGCAACGTGATGAGGTGCG
GCTGCCGAGAACCCGTGCTACCAACCCGGGGGTCCGCGCTACAAACCCAACGGCCCGCCTCCCGGCATTCAAGTACAACC
GGTCCATGAAGCACAACGTGATGGGTG---GAGAGGAAGCGGCGACGTGCTCTGTGTGCCTCGGCGTGTTCCAGCTAGGT
GAGACGGTGCGGCTGTTGCCGGCGTGCATGCACCTGTACCACGTGGAGTGCATCGACCCGTGGCTGGACGCGCACTCGAC
GTGCCCGATCTGCCGCTCGGACGCCGACCCGACGATGGACGGCGGACGCCCACCCCCCGTTTAGTCTTTT----------
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>SNPs
----------------------S-----------------------S------------S--------------------
--S-----S---S-------------------------S---S---S---------------------------------
-----------S------------------------------------S-------------------------------
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---------------------------------------------S-S---------------------S----------
-S---------SSSSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S------S---
-------------------S-------S------------------S---S---S---------------SS--------
-----------------S---------S--S--------S----------------------------------------
------S--S-SS--S-----S--S-----S----S----------SS---------S-----S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------SSS--S----S----S---------S-----------------S----------S-----
-S----------------------------------------------------SS------------------------
----------------------S-------------------S----------------------S--------------
---------S----------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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--S-------------------------------------SSSSSS----------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------S---------------------------------------
-----S---------------------S------------------------S---------------------------
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------------------S-------------------------------------------------------------
------S-----------------------------------S-------------------------------------
--S--S----------S-------------------------------------------------S-----S-S-----
--SS----------------------------------------------------------------------------
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---------S--S-------------------------------------------------------------------
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--S----S---SSS-------------S----S---------------S--S--S-S------S-S----------SS--
------S-SSS--------S-S--S-S-S---S-----------------------------------S-----------
----S---SSSSSSS--SS--------------SS----------------SS--S--------SS-----S--S--S--
------------------S-----S----------SS-----S-------S--------S--------S----S---SS-
S-------------SSSS-----------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_926
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--------------------------CGACGACCAGGAGACATAGC----------------------------------
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>reverse_3133
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------------CGCCTTTTCCATCTCGACCT------------------------------------------------
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