>input_sequence_77230
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--------------------ATGGCTTCCATGACCCAGCCCATGCCGTATTACCCCACCACCAACCCCATCATGCACGCG
CAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCCTTCCTCGCCGTCGTCGC
CTGCGTGGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCACTACTACGGCACCAACG
CGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGAGCTCCCGCGCGGTGGTC
CACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCGGCGTGGAAGACCGACGCCAAGGCCGACAA
CAGAGGGCG---------GCCGCAGCAGCACCACCTCCATCCCCAGGTCGGCATGCCGAAGGAGTACGCCGGTTTCAGGT
ACCCCGCGGCCGCGAACGGCGCGGTCAGGCAAGGGCAATTAAGGGGCGGAACATTCGTCTCTGCGAAGCCCGGTTCATGA
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>chr6D_1_TraesCS6D01G254300
CAGGCTGGCGTAATCTGAAGGGCTTTACGTTACGCCGTTCAGTAGTCCAGTTCCTCTGTTCCTGTATGTAGGCAAAAGGG
TTATCGATTTCCATCCGTCGAGCATTCCTTTGCGACGCATGCTTCTCGTCTCGTGGCTCAATCAGTAGAATGCATCTGCT
CGAGTGACAACGACGTCCACGTTGCTACGTACAGTGCCTAGGCAGAATTGTTGTGCCTCCTACACGCTGCCAAAATACCA
TCCAGGGCTCCCACACTGAAGATGTCTACCACTAGACCGCATTCGAGCAAATATCATGGAACAGCAAGACCAAACCCTAC
GCCTAAGATGTCACCTAACGGAGTCTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAAG
CAGTAGGCGCTCATTCCTCTGCGCCCCCACAATCTGCTAAAGCGGAG-GGGGAAAGCAATCAAAGAAGCCAAAGCGATGT
GATGTCCCTGCC-------------TGCTCCTGCTCGCCGCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA-----
CGTCCAAAAGCAAAAGCAGAGAGC----CAGCAGCACAGCACAGTAGTACTGTGCTACAGTGAGAGTGTGAGCGCGAGGC
CAACCGGGCTGCATGCC--------GAGGGAGACGTTGTGCCAAGCCCGCGCATTGAACTGCTCCAAAGCGCGCGCCTTT
CTCGCGGTCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGGAAAAAAAGAAAA---GAATGAGTGAAAAG
ATGGGCGATGCAACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTTTGTTCAATTCAAACCCCGGCCTC
TGC------C--------------------TCGGCCTCTGCCCCGCTCCATCATAAAAGGACCACACCACTACCCACGAA
GTTAACGCCCCATCGCAAGCCATTTCCTTTGAGCGCAGAGACTCATCAGAGAGTAGTTTTCGAGAGCACGAGAGGCGCAG
AGAGGAGAGGAGAAGCTGCCATGGCTTCCATGACCCAGCCCATGCCGTATTACCCCACCACCAACCCCATCATGCACGCG
CAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCCTTCCTCGCCGTCGTCGC
CTGCGTGGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCACTACTACGGCACCAACG
CGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGAGCTCCCGCGCGGTGGTC
CACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCGGCGTGGAAGACCGACGCCAAGGCCGACAA
CAGAGGGCG---------GCCGCAGCAGCACCACCTCCATCCCCAGGTCGGCATGCCGAAGGAGTACGCCGGTTTCAGGT
ACCCCGCGGCCGCGAACGGCGCGGTCAGGCAAGGGCAATTAAGGGGCGGAACATTCGTCTCTGCGAAGCCCGGTTCATGA
TCATCACAGTAGCCTTTAGGT-----TCACAGCTTGATGCATCTCATCATATGAT--AGAGTGTCTGCTAGGCATTTACT
ACTAGGCATCCATGATCCATCGGCGATCATGGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGCGCTCTGCAAAGTTTGT
ACCAGTTCCCAGTCACTTCCAGATTGTATTTTGTATATTAATT-CATCGAGCAGTGAAGAACGTCCCATTCTCAAAGTAA
CCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGCGGAGCTTCGTTGGCCTTGCGCTTGATGGTGATGACTGGA
CACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACAGCAGCCGTTTAGTTCAA
GCGGAAATTCTGCTTTGCTTTACCCGCAAGAATGGACCACAATATAGGAGCAGTTCAGAATAAAAAAAGTCACACGGCAT
AGTTCAGTGATG-------TGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAAAT----TGTGGTCACACAGGAAG
GAACAAAACGAATGTACCTGAAAACATAAAAAGGAAACCCTATGTATATACTAGGTTGCATCATAAGGATGCATTCACAA
ACTCTATGATAGAATGCATTTCGATTTGAAAAA-TATTCTGGGAAGGTAAAACCCTCACACGTTCT--TATTCTGGAAAG
ACAAGATTTAGGCTGTGGAAAATTCGCTTTTGTCACAGCTATCAGCTATGGGTGCAAACGTAGCATATGGCATCAGTCCA
TGTGGAAAATAGTT-ATTTCTCGAAACTACTCATATAAGAGCGTTTTTGACACTGACACCGCAGTGTCAAAAACGCTCTT
ATATTATGGGACGGAGGGAGTGAAAAACAAGTATAACAAAGTAAATATGCCCTTGCATCAGTGCCATAAAGTGTTGCAGA
GATGTAATGTATGGCAGGATTACGTCCCATCATAAATATATCTCTTAAACTGGGAGAAAAACA
>chr6B_1
CAGGCTGGCGTAATCTGAAGGGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTATGTTCCTGTATGTAGGCAAAAGGG
TTATCGATTTCCATCCGTCGAGCATTCCT-TGCGACGCATGCTTCTCGTCTCGTGGTTCAATCAGTAGAATGCATCTGCT
CGAGTGACAACGACGTCCACGTTGCTACGTAGTA--CCTAGGCAGAATTATTGTGCCTCCCACACGCCGCCAAAATACCA
TCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACCAAACCCTAC
GCCTAAGATGTCACCTCACGGAATTTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAAG
CAGTAGGCGCTCATTCCTCTGCGCCCCCACAATCTGCTAAAGCGGAG-CGGGAAAGCAATCAAAGAAGCCAAAGCGATGT
GAGGTCCCTGCC-------------TGCT----------GCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA-----
CGTCCAAAAGCAAAAGCAGAGAGCAAGCCAGCAGCACAGCACAGTAGTACTGTGCTACAGTGAGAGCGTGAGCGCGAGGC
CAACCGGGCTGCATGCCGAGGGACTGAGGGAGACGTTGTGCCAAGCCCGCGCATTGAACTGCTCCAAAGCGCGCGCCTTT
CTCGCGGTCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGGAAAAAAAAAG-----GAATGAGTGAAAAG
ATGGGCGATGCAACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTTTGTTCAATTCAAACCCGG-----
-GCCTCTGCC--------------------TCTGCCTCTGCCCCGCTCCATCATAAAAGGACCACACCACTACTCACGAA
GCCAACGCTCCATCGCAAGCCATTTCCATTCCCTTCCTTGAGGAA-CAGAGAGTAGTTCTCGAGAGCTGAGAGGCAGCA-
----GAGAGAAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCAACCCCATCATGCACGCG
CAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCCTTCCTCGCCGTCGTCGC
CTGCGTCGCGGGGCGGCTGTGCGGCCGTCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCACTACTACGGCACCAACG
CGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTTAAGTACCCGCCGATGAAGCCCATGCCAAGCTCCCGCGCGGTGGTC
CATGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCAGCGTGGAAGACCGACGCCAAGGCCGACAA
CAGAGGGCGCCAGCAGCAGCAGCACCACCACCACCA------CCAGGCCGGCATGCCGAAGGAGTACGCCGGTTTCAGGT
ACCCCGCGGCTGCCAACGGCGCCGTCAGGCAAGGGCAAGTAAGGGGCGGAACATTCGTCTCCGCAAAGCCCGGTTCATGA
TCATCACAGTAGC--TTAGGT-----TCACAACTTGATGTATCTCATCATATGAT-AAGAGTGTCTGCTAGGCAATT--T
ACTAGGCATCCATGATCCATCGGCGATCATAGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGCGCTCTGCAAAGTTTGT
ACTAGTTCCCAGTCACTTCCAGATTGTATTTTGTACATTAAACCCATCAAGCAGTGAAGAACATCCCATTCTCAAAGTAA
CCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTTGATGGTGATGACTGGA
CACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACACCAGCCGTTTAGTTCAA
GTGTAAATTCTGCTTTGCTTTACCCACAAGAATGGACCACAATATACTAGTTCAG------AAAAGAAGTTACACGGCAT
AGTTCAGTGATGTGCACAGTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAAATATATTGTGGTCACACAGGAAG
GAACAAAACGAATGTACCTGAAAACATACAAAGGAAACCTTATGTATATACTAGGTTGCATCATAAGGATGCGTTCACAA
ACA--ATGATAGAATGCATTTGGATTTGAAAATTTATTCTGGGAAGATGAAACCCTCACACGCTCTGTTATTCTGGAAAG
ACATGATT-AGATTGCGGAAAATTCACATTAGTCACAGCTATCAGCTATGGGTGCAAACGTAGCATATGGCATCAGTCCA
TGTGAAGACTTCACCATTTCTCGAAACTA---------------------------------------------------
----------------------AAAAACAAGTATAGCAAAATAAAAATACCCTTGCATCAGTGCTATAAAGTGTTGCAGA
GATGTAATGTATGGCAGAATTATGTCCCATCATAAATA-------------------------
>chr6B_1
CAGGCTGGCGTAATCTGAAGGGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTATGTTCCTGTATGTAGGCAAAAGGG
TTATCGATTTCCATCCGTCGAGCATTCCT-TGCGACGCATGCTTCTCGTCTCGTGGTTCAATCAGTAGAATGCATCTGCT
CGAGTGACAACGACGTCCACGTTGCTACGTAGTA--CCTAGGCAGAATTATTGTGCCTCCCACACGCCGCCAAAATACCA
TCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACGAAACCCTAC
GCCTAAGATGTCACCTCACGGAATTTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAAG
CAGTAGGCGCTCATTCCTCCGCGCCCCCACAATCTGCTAAAGCGGAG-GGGGAAAGCAATCAAAGAAGCCAAAGCGATGT
GATGTCCCTGCCTGCTCCTGCTC---GCT----------GCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA-----
CGTCCAAAAGCAAAAGTAGAGAGCAAGCCAGCAGCACATCACAACACAGC------------AGCACAGCACATCA----
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-------------------------------------GCGAGGGCGAAAAGGAATTTTGTTCAATTCAAACCCGG-----
-GC------C--------------------TCTGCCTCTGCCCCGCTCCATCATAAAAAGACCACACCACTACTCACGGA
GCCAACGCTCCATCGCAAGCCATTTCCATTCCCTTCCTTGAGAAA-CAGAGAATAGTTCTCGAGAGCTGAGAGGCAGCA-
----GAGAGAAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCAACCCCATCATGCACGCG
CAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCCTTCCTCGCCGTCGTCGC
CTGCGTCGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCACTACTACGGCACCAACG
CGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCAAGCTCCCGCGCGGTGGTC
CATGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGAGAAGCCCGCGGCGTGGAAGACCGACGCCAAGGCCAACAA
CAGAGGGCGCCAGCAGCAGCAGCAGCACCACCACCA------CCAGGCCGGTATTCCGAAGGAGTACGCCGGTTTCAGGT
ACCCCGCGGCTGCCAACGGCGCCGTCAGGCAAGGGCAAGTAAGGGGCGGAACATTCGTCTCCGCAAAGCCCGGTTCATGA
TCATCACAGTAGC--TTAGGT-----TCACAACTTGATGTATCTCATCATATGAT-AAGAGTGTCTGCTAGGCAATT--T
GCTAGGCATCCATGATCCATCGGCGATCATAGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGCGCTCTGCAAAGTTTGT
ACTAGTTCCCAGTCACTTCCAGATAGTATTTTGTACATTAAACCCATCAAGCAGTGAAGAACATCCCATTCTCAAAGTAA
CCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTTGATGGTGATGACTGGA
CACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACACCAGCCGTTTAGTTCAA
GTGTAAATTCTGCTTTGCTTTACCCACAAGAATGGACCACAATATACTAGTTCAG------AAAAAAAGTTACACGGCAT
AGTTCAGTGATGTGCACAGTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAAATATATTGTGGTCACACAGGAAG
GAACAAAACGAATGTACCTGAAAACATACAAAGGAAACCTTATGTATATACTAGGTTGCATCATAAGGATGCGTTCACAA
ACA--ATGATAGAATGCATTTGGATTTGAAAATTTATTCTGGGAAGATGAAACCCTCACACGCTCTGTTATTCTGGAAAG
ACATGATT-AGATTGCGGAAAATTCACATTAGTCACAGCTATCAGCTATGGGTGCAAACGTAGCATATGGCATCAGTCCA
TGTGAAGACTTCACCATTTCTCGAAACTA---------------------------------------------------
----------------------AAAAACAAGTATAGCAAAATAAAAATACCCTTGCATCAGTGCTATAAAGTGTTGCAGA
GATGTAATGTATGGCAGAATTATGTCCCATCATAAATA-------------------------
>chr6A_1
CAGGCTGGCGTAATCTGAAGAGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTCTGTTCCTGTATGTAGGCAAAAGGG
TTATCGATTTCCATCCGTCGAGCATTCCTG-GCGACGCATGCTTCTCGTCTCGTGGCTCAATCAGTAGAATGCATCTGCT
CGAGTGACAACGACGTCCACGTTGCTACGTA-----CCTAGGCAAAATTATTGTGCCTCCTACACGCCGCCAAAATACCA
TCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACCAAACCCTAC
GCCTAACATGTCACCTCACGGAATTTGAGTATATGCGAGGCGTTTTAGATCGGCACGCCCAAGAAAGGTGGCTAGTCAAG
CAGTAGGCGCTCATTCCTC--CGCCCCCACAATCTGCTAAAGCGGAGCGGGGAAAGCAATCAAAGAAGCCAAAGCGATGT
GATGTCCCTGCCTGCTCCTGCTCGCTGCT----------GCTCCTCGCTGCTACGGTTGCTTTGATCCAATGCAATGCAA
CGTCCAAAAGCAAAAGCAGAGAGC----CAGCAGCACAGCACAGCACAGT------------AGAGCGTGAGGGCGAGGC
CAACC------------------CTGAGGGAGACGTTGTGCCAAGCCCGCGCATTGAACTGCTCCAAAGCGCGCGCCTTT
CTCGCGGCCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGTAAAAAAAAAAAGAACGAATGAGTGAAAAG
ATGGGCGATGC-ACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTTTGTTCAATTCAAACCCGG-----
-GCCTCTGCCTCTGCCTCTGCCCCGCTCCATCTGCCTCTGCCCCGCTCCATCATAAAAGGACCACACCACTACCCACGAA
GCCAACGCTCCATCGCAAGCCATTTCCTTTGAGCGCAGAGACTCATCAGAGAGTAGTCTTCGAGAGCACGAGAGGCGCAG
AGAGGAGAGGAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCAACCCCATCATGCACGCG
CAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTCTTCACCGTGCTGGGCGTCATCTCCTTCCTCGCTGTCGTCGC
CTGCGTCGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCACTACTACGGCACTAACA
CGGTGGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGAGCTCGCGCGCCGTGGTC
CACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCCGCGTGGAAGACCGACGCCAAGGCCGACAA
CAGAGGGCGCCCGCAGCAGCAGCAGCACCACCACCAGCATCCCCAGGCCGGCATGCCGAAGGAGTACGCCGGTTTCAGGT
ACCCCGCGGCTGCCAACGGCGCGGTCAGGCAAGGGCAAGTAAGGGGCGGAACGTTCGTCTCCGCAAAGCCCGGTTCATGA
TCATCACAGTAGC--TTTTAGGTTCATCACAGCTTGATGCATCTCATCATATGATAAAGAGTGTCTGCTAGGCATTTACT
ACTAGGCATCCATGATCCATCGGCGATCATAGCGTGTTCGTTCTTCACTCTAGTTTTGGGGCGCGCTCTGCAAAGTTTGT
ACCAGTTCCCAGTCACTTCCAGATTGTATTTTGTACATTAATT-CATCGAGCAGTGAAGAACATCCCATTCTCAAAGTAA
CCACGGCTGCACGAAAGCATCAGTCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTTGATGGTGATGACTGGA
CACTCGGCGTGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACACCGACCGTTTAGTTCAA
GCGGAAGTTCTGCTTTGCTTCACCCACAAGAATGGACCACAATATGCTAGTAGTTCAG----AAAAAAGCCACACGGCAT
AGTTCAGTGAT-------GTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATACAAAATATATTGTGGTCACACAGGAAG
GAACAAAACGAATGTACCTGAAAACATAAAAAGGAA------------------GTTGCATCATAAGGATGCATTCACAC
ATA--ATGATAGAATGCATTTGGATTTGAAAAA-TATTCTGGGAAGATAAAACCCTCACACGCCCT--TATTCTGGAAAG
ACAAGATT-AGGTTGTGGAAAATTCGCATTTGTCACAGCTATTAGGTATGGGTGCAAACGTAGCATATGGCATCAGTCCA
TGTGAAGACTTCACCATTTCTCGAAACTA---------------------------------------------------
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>SNPs
------------------------S---S-----------------S---------------------------------
-----------------------------S--------------------------------------------------
-------------------------------SSSSS-------------S-----------------S------------
---SSS-SS--S------S--------------------S---------------------------S------------
----------------S-----S-S-------------------------------------------------------
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-----------------------------SSSSSSSSSS-----------------------------------------
------------------------------------------------------------------S-------------
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----------------------------------------------------------S---S-----------------
-------------------------------------------------------------------------S-SSSSS
S-------------------------------S-----------------------------------------------
-SS-----S-----------------------------------------------------------------------
----------------------------------S---------------------------------------------
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------S-------------------------------------------------------------------------
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--------------------S------S-------SS----------S--------------------------------
----------S--S------------------------S----------------------S--S---------------
-------------SS-----------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------------S--------------------------S-----------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------S----------------
-------------------------S--------------------SS--S-------SSS-------------------
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---------------------------------------S----------------------------------------
--SSS----------------S------------------------S---------------S-----------------
--------S---S--------------S----------------------------------------------------
----S-S-S-SSSS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-------------S----S----S--S---------------S---------------
-----------------S----S---------------SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_878
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----------------------------------------------------------GTTCAATTCAAACCCCGGCC--
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>reverse_2446
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---------------------------------------------TTTGACACTGACACCGCAGT---------------
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