>input_sequence_77224
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-----------------------------------ATGGACGCCGACCACGGCGGCGGGGTGGACGAGGCGGAGGCGGCC
TTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGCCCTCCTCCACATCCTCCTCGTCCTCCGCCCTCTC
C---------CACCAGCGCGTCGGCGG------GGCGGCGGCGACGCTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGCG
CGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGCGGGGCCGCGCTGGAAGACCTTCATCCGCCGCTTC
GGGCGCGGCCCCGGCGGGCCCCGCCCGCACCACAA---CTT------CGGCGGCCGCAAGCTCAACTACGACGCGCTCAG
CTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGAGGCCG---GCGACCACGCCGGCGGCTACCGCGACTTCT
CCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGACCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCAC
CCGCCGCCCGCCGACGGGGCCCCACGGGCCTGA-----------------------------------------------
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>chr6B_1_TraesCS6B01G337500
ATGCATGGCACAAAGTGGAGGTCGACCGCTGGATCAAAGCATCGTCCAATGTTCGGCCAGTGGGTGTCGGCTGCTCAGTA
GTTCCGATTCCTTAATCAATAGAGGCGGTGCAGCTGCAAGCAAAACCTCGTGCCGGCGAATCCGCGGGACGTTCGCAGCG
CAAATGGCACGTAGAGGACCTAGCACGCCGCTCGCAACTGCTTCACACGACCGGCGGCAGCAAGATCTCCCGGTCCTCGT
CACCCGCAGGACAAAGCGCAGGCGGCCGCCCGACCCCGACGTGTCCCAGCCAGCTTCGTCCCCCCTGCGTCCGCGCTGTC
GTTCCGATCCC----------ACCTGGCGCACTTCACCGTTAATTAAAGCGAAAGGCGCAGAT-AATGTGATCATTTTGG
ATAACAAAGCATGGGATGAATCTGAATCTCATGTGACTAATAACGCACTA---TGCAGATCGTCGTCAGAAACAACCGTG
AAGCAGCCCGAAGCCGAATGCTTCTCCAATTCTATCTGCGG---ATAATAATAGAAGATGCACAGCCTGTTGATCGGACC
TAGTACTAGGAAGGACCGTGCCATGTTTATCACGACTCCAAGTGGACAGTAGTACCAACGAGTAACCTCTTTGCTGATCC
GCGGCGAGACGAGGGAGAAAAGTAGTAAGCGTGTCTTTTCTTTCCCATCATCAGGATATAAGCAAGCGTGTCAGTGTTTT
TTTAAGAGA-TTTTTTTTTT--------------------------------TGGCGAACGTTGGGTTGGGATAGAGGGA
TGGTCAGGGCCCCGCGAATTCCGGCCCACGTCAGCCGGCCGCGCCCACCGTTGACTCCCCCACCCCCGCCCACGGTCTGC
CCGCGGGT---GGCCTCCCGATAAAAGGCCCGCACGCCATACGCTGCCACGACACGGCGCAACTGCACAACAGACCGAAG
AAACGCACAGCCGCAAAGAGACCAGACCCAACCGCATCGGCCCGGCGGCGCAGGGGT------------TTCCTTCCTTC
CACGATCCACGGTCGC----------GGCGAGGCGATGGACGCCGACCACGGCGGCGGGGTGGACGAGGCGGAGGCGGCC
TTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGCCCTCCTCCACATCCTCCTCGTCCTCCGCCCTCTC
C---------CACCAGCGCGTCGGCGG------GGCGGCGGCGACGCTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGCG
CGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGCGGGGCCGCGCTGGAAGACCTTCATCCGCCGCTTC
GGGCGCGGCCCCGGCGGGCCCCGCCCGCACCACAA---CTT------CGGCGGCCGCAAGCTCAACTACGACGCGCTCAG
CTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGAGGCCG---GCGACCACGCCGGCGGCTACCGCGACTTCT
CCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGACCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCAC
CCGCCGCCCGCCGACGGGGCCCCACGGGCCTGACCGCTCCTCCGCCCCCT-------CGGATC-----GCGCCACAGGAA
AAGGAAAGGTATCGCTCGACGG----TGGTGGTCAAACTTCAAA--------GCGTGGCAAAAAGACGGTGGCCTTTTCT
CGGATGGTTCGGCTCCATAGGACGGGATGCGGATGGGGATCGTTTCTTTCTTCCAGTTCTTTCTCTCCTCCCCTGCTGCT
CCCA-TGATTGATTGTTCGTCGCTGTATAAAGAAAAACAAAGAAGAAGAGAAGCGATTGCTACATTCGTTGTCGTACTTA
AT-------------CAAGTTTTGTCCCCAATTACGGCTGATAATTTCTTCGTGTTTGATTTTGCGAATGGTTGGTCAGT
GACTTCTTGGCGTCGCATTAGCAATTTCGCCGTTGT-----TTTGCATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTG
GGCGATTGGTAAGAAGAAGAGGAATTCTGAGCGGAATTCTAAAAGCTTGGCGTGTTCCAGCTGGGACTGATTGCGACCCA
AGAAACGAC-GGGAGACCTCTGGCTGGAGGCGTTC---AGCCGAGATAGAGATGCTTGTCGCGACCGAGCACGTCTTACC
AGAGAAGACGGCCGTGA-----TCTTGTGACGCATGTCCCCACTTTTGGAGGTGTTCCACGGCCTGATGCATGTGAACGA
TCATCAATCACTGTTACTCCTCGCTGTGAATTGGATGGTCAAGTAGAGAATTGATGTGAATTCATCGCGCCAACCGTGAT
CTGAAGAGAATCATGGAC--CGCAGCATCGAATTCCAGACACACAGGTTTGCTTGATGTTAACCTCCAACCATCCATCGC
CGGACCAGAATAGAATGCTTCTGGGTTGTCGTGTGGATACAGGTCGCATT-GGAGCAGAAAATACGTACAAACTACTCTT
ATCATCCACTTTGAATGGT--------------------------ATAGTGGTTTCCTTCCTGGAGTACGCAGACCAGCT
TTGAC-AATATGAAAACCATACGACATACTCATCAATCATGATCAGGTATTCAGGTGTATGAATATGTGTGACAT
>chr6A_118
--------------------------------------------------------------------------------
-------------------------------------AAGCAAAACCTCGTGCCGGCGAATCCGCGGGCCGTTCGCGGCG
CAAATG----------------GCACGCCGCTCGCAACCGCTTCGCACGACCGGCAGCAGCAAGATCTCCCGCTCCCCGT
CACCCGCAGGACAGAGCG----------------CCCGATGTGTCCCGGCCAGCTTCGTCCCCCGGT-GTCCGCGCTGTC
GCTTCGATCCCTTCCGACTCCACCCGGCGCACTTCATCATTCACTAAAGCAAAAGGCGCAGATAAATGTGATCTTTTTGG
ATAAAAAAGCACGGGATGAAA-TGAATCTCATGTGACTAGTAACGCACTACTATGCCGATCGCCGTCAGAAACAACCATG
AAGCAGCCTGAAGCTGAATGTTTCTCCAACGCCACCACCGGAGAATAATAGTAAAAGATCCACAGCCTGTTGATCGGACC
-----------------GTGTCATGTTTACCACGACTCCAAGTGGACAGTG---CCAACGAGCAACCTCTTCGCTGATCT
GCTGCGAGACGAGGGAGAAAAGCAGT-------------------------------------AAGCGTGTCAGTTTTTT
TTTAAAAGA-ATTAGGAAGCGTGTCAGCTTGGTAACAAAAGA---TCTACTCTGGCGAACGTTGGG--------------
---------CCCCGCGGATTCCGGCCCACGTCAGCCGGCCGCGCCCACCGTTGACTCCCCCAC-CCCGCCCACGGCCTGC
CCGCGGCGGGCGGCCCCCCGATAAAAGGCCCGCACGCCATCCGCTGCCACGACACGGCGCAACTGCACGACAGGCCGAAG
A------------------GACCAGACCCAACCACATCGGCTCGGCGGCCGGCGCAGGGGTTTCCTTCCCTCCTTCCATC
CACGATCCACGGCCGCGGCGAGGCGAGGCGAGGCGATGGACGCCGACCACGGCGGCGGTGTAGACGAGGCGGAGGCGGCC
TTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGCCCTCCTCCGCGCCCTCCTCGTCCTC---------
CGCGCTCTCCCACCAGCGCGCCGGCGGCGGGGCGGCGGCGGCGACGCTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGTG
CGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGCGGGCCCGCGCTGGAAGACCTTCATCCGGCGCTTC
GGCCGCGGCC---------CCCGCCCGCACCACCA---CGCCTTCGGCGGCGCCCGCAAGCTCAACTACGACGCGCTCAG
CTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGACGCCGGCGGCGACCACGCCGGCGGCTACCGCGACTTCT
CCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGACCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCCC
CCGCCGCCCGCCGACGGCGCCCCGCGGGCCTGACCTCCCCTCCGCCCCCCGTCCCCCCGGATCACACAACACCACAGGGA
AAGTAAAGGTATCGGTCGATGGATGATGGTGGTCAAACTTCAAACTTTCAAAGCGTGGCAAAAAGACGGTGGCCTTTTCT
CGGATGGTTCGGCTGC---------------GATGGGGATCGTTTCTTTCTTCCAGTTCTTTCTCTCCTCTCCTGCTCCC
ATGATTGATTGATATTTCGTCGCTGTACAAAGAAAAAC---GAAGAAGAGAATCCATTGTTACATTCGTTGTCATACTTA
TTAATCCGTCTTATCAAAGTTTTGTCCCCGATTACGGCTGAGAAATTCTTCAC---------------------------
------------TCGCGTCAGCAATTTCGCCATTGTTTTGCTTTGCATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTG
CGCGATTGGTAAGAAGAAGAGGAATTCTGAGCCGAATTCTAAGCGCTTGGCGTGCTCCAGCTGGGACTGATTGCGACCCA
AGAAACGAC-GGGTGACCTCCGGCTGGAGGCGTTCGAGAGCCAGGATAGAGATGCTTGTCGCGACCGTGCACGTCTTGCA
CGAGACGGCGGTGTTCTTGGCCTCTTGGGACGCATGTCCCCACTTTTCTCAA---------GCATGATACATGTGAACGA
TCATCAATCGCTGTTACTCCTCGCTGTGAATTGGATGGTGG---AGGGAATTGATGTGAATTCATCGCGGGAGCCGTGAT
CTCGAGAGAATCACGGAC--CGCGGTATCGAATTCCAGACGGACAGCCTTGCTTGATGTTAACCTCCAACCATCCATGGC
CGGACCAGAATAGAATGCTCCTGGGTTGTCGTGTGGATACAGGTCGCACTGGGAGCACAAAGTACTCCTACAA-------
-------ACTTTGAATGGTTTGTGCAATGAAGCCATCATCAGCCCATAGTGGATTCCTCCCTGGAGTATGTAGACCATCT
TTGACAAATATGAAAACCATACGCCATGCTCATCAATCATGGTCAGGT---------------------------
>chr6D_242
ACCGGCAGCAGCAAAGCGCAGGCGGC------------------------------------------------------
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----------------CG----------------CCCGATGTGTCCCGGCCAGCTTCGTCCCCCCGT-GTCCGCGCTGTC
GTTCCGATCCCTTCCGACTCCACCTGGCGCACTTCATCATCATTAAAGCAAAAAGGCGCGGATAAATGTGATCATTTCGG
ATAACAAAGCACGGGGTGAATCTCATG----TGTGACTAATAACGCACTACTATGCCGGTCGTCGTCAGAAACAACCGTG
AAGCAGCCTGAAGCTGAATGTTTCTCCAACTCTACGGAT----AATAATAATGGAAGATGCACAGCCTGTTGATCGGACC
-----------------GTGTCATGTTTATCACGACTCCAAGTGGACAGTA---CCAACGAGTAAGCTCTTCGCTGATCT
GCGGTGAGACGGGAGAGAAAAGTAGTAAGCGCGTCTTTTTTTCC----CATCAGGATATAAGCAAGCGTGTCAGTTTTTT
TTTAAGAATTATTAGCAAGCGTGTCAGCT-GGTAACAAAATATCTTCTATTCTGGCGAACGTTGGGTTGGGATAGAGG--
---TCAGGGCCCCGCGGATTCCGGCCCACGTCAGCCGGCCGCGCCCACCGTTGACTCCCCTG-CCCCGCCCACGGCCTGC
CCGCGGCGGGCGGCCTCCCGATAAAAGGCCCGCACAACATACGCTGCCCCGACACGGCGCAACTGCACGACAGACCAAAG
A------------------GACCAGACCCAACCACATCGGCCCGGCGGCGCAGGGGT--------TTCCTTCCTTCCTTC
CACGATCCACGGTCGCGGCGAGGCG----------ATGGACGCCGACCACGGCGGCGCGGCGGACGAGGCGGAGGCGGCC
TTCTTCGCGCGCCGGGGCAGCCGGTGCTGCTGCTTCCCCTGCTGGCCCTCCTCCGCGCCCTCCTCGTCCTC---------
C---------CACCAGCGCGTGGGCGG------GGCGGCGGCGACGCTGGGCGGGGAGGAGGAGCACTGGTGGCAGGGCG
CGGTGGACGCGCTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGCGGCCGGGCCGCGGTGGAAGACCTTCATCCGGCGCTTC
GGTCGCGGCCCC---------CGCCCGCACCACCACGCCTT------CGGCGGCCGCAAGCTCAACTACGACGCGCTCAG
CTACGCGCTCAACTTCGACGAGGGCCACGGCGCCACCCCCGAGGCCGGCG---ACCACGCCGGCGGCTACCGCGACTTCT
CCTCCCGCTTCGCCGCCCCGCCCGCCTCCGCCAAGTCCTCCATGGACCTCGGCGGCCGCGACGCGCCGCCGCTCTTCCCC
CCGCCCCCCGCCGACGGCGCCCCGCGGGCCTGACCGCTCCTCCGCCCCCGT--CCCCCGGATC-----ACACCACAGGGA
AAGGAAAGGTATCGTTCGATGGATGATGGTGGTCAAACTTCAAACTTTCAAAGCGTGGCGAAAAGATGGTGGCCTTTTCT
CGGATGGTTCGGCTCGATCGGGATGGGGATGGATGGGGATCGTTTCTTTCTTCCAGTTCTTTCTCTCCTCCCCTGT---T
CCTA-TGATTGATTGTTCGTCGCTGTACAAAGAAAAACAAAGAAGAAGAGAAGCGATTGCTACATTCGTTCTCATACTTA
TCA---------ATCCAAGTTTTGTCCCCGATTACGGCTGATAATTTCTTCGTCTTTGATCTCACGAA----TGGTTAGT
GACTTCTTGGTGTCGCATTCGCACTTTCGCCGTTGT-----TTTGCATAAACAAAAGTTGAGTGTCCGGCCGGAAACTTG
GGCGATTGGTAAGAAGAAGAGGAATTCT------------AAAAGCTTGGCGTGTTCCAGCTGGGACTGATTGCGACCCA
AGAAACGACGGGGAGACCTTCGGCTGGAGGCGTTCGAGAGCCAGGATAGAGATGCTTGTCGCGACCGTGCACGTCTTGCA
CGAGACGGCA---GTGA-----TCTTGTGACGCATGTCCCCACCTTTGGAGGTGTTACACGG------------------
-------------------CTCGTTGTAAATTGGACGGTCG---AGGGAATTGATGTGAATTCATCGTGAGAACCGTGAT
CTTGAGAGAATCAGGGACCGCGCGGTACCGAATTCCAGACAGACAGCCCTGCTTGATGTTAACCTCCAACCATCCATGGC
CGGACCAGAATAGAATGCTTCTGGGTTGTTGTGTGGATACAGGTCGCATTGGGAGCACAAAGTACTCCTACAA-------
-------ACT----------------------------------------------------------------------
---------------------------------------------------------------------------
>SNPs
-SSSSSS---SS--SSS-SS-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S-------S---
------SSSSSSSSSSSSSSSS----------------S-----S----------S----------------S---S---
-------------S----SSSSSSSSSSSSSSSS-----S-------S-----------------SSS------------
------------------------------------S-S-----------S-----------------------------
-----------S--------------------------------------------S-----------------------
--------S-----S-----S--------S----S-SS------------------------------------------
SSSSSSSSSSSSSSSSS---S------------------------------SSS-----------------S-------S
-------------------------------S-------S--S-SSSS---------------------------S----
----------S--SSSSSSS----------------------------------------------------------SS
SSS-------------S----------------------------------------------------------S----
------SS------------------------------------------------------------S-----------
-SSSSSSSSSSSSSSSSSS--------------S----------------------------------------------
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------------------------------------------------------S-SS-------------SSSSSSSSS
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-------------------------------------------------------------------------S------
--S---------SSSSSSS--------------S----------------------------------------------
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------------------------------------------------------------------------------S-
-----------------S-----S-------------------------S------------------S-S-------S-
--------------S----S------------------------------------------------------------
------------------S--SSS--SSSS-----------------------------------------------S--
--S------------------------S---------------------------------------------S------
S----------------------------S-----------------------S------S-SS----SSSS----S---
----------S---------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------S---------------------SS-----------------------S---------S-S
S----S-S---SS-------------------------------------------S------S----S-----------
---------S------------------------------SSSS--S----------------------SS---------
--SS---------S---------S-S---------------S----SS-----------------------------S--
---------------------------------------------------------S---S---SSSS-S-SSSSSSSS
SSSSSSS---------------------------------------------S-----S---------S-S------S--
-----------------------S---S-------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_83
---------------------------------------------------------------GTGTCGGCTGCTCAGTA
GTT-----------------------------------------------------------------------------
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>reverse_1669
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--------------------------------------------------------------------GCGCCACAGGAA
AAGGAAAG------------------------------------------------------------------------
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