>input_sequence_77218
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--------------------------ATGGAGTGCGGCCGTAAGCAATGGCAAGCGCAGCTGGCGGGGCTCGCGCTCGCG
TTCCTCCTCTTTGCGCCTGCGTTCGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTGGCGTCGCCGGG
GAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAACCCTGACGGTTCCACCT
GGAAGTACGAGTGGGGATGGTCTGCTGGGCCTGGTGGAAAGGGCTCC------------GGTTACGGTTACGG------T
GGCAGCGGTGATGCAGGCGGCGGGGCCGAAGGTGGTGGCAGTGGGAGAGGCGGTGGCGGAGGAAGCGGAAGAACGTTTGG
TCCACGCGATCGGGGATACGGAGGACATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGGGGAAGGCGCGT
TTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGGAGAAGAAGCAGGACGGT
GGCGGTAAAAACTGA-----------------------------------------------------------------
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>chr6A_1_TraesCS6A01G241700
CGGGCCACGTGGCACCTGTTGGGACCCACTGGTCAGATTTTCACTCAAACAACTCTAATTGCTTGTTCAGTGTTTTCTGA
AAACTGTCAGTACGATGGTAGTGGTTTTTTGAAAAAAAAACGAAAGATGATGGTTTTGTGAATTAGGGTCCCCAATTGTG
GTGGTTTTTTACAATTTACTTCAATAAAATAGCTAATCTATCCCGTTTTGGCGGTCAAAATAAAGAAGTCTGTTGCGAAC
AGGAGTGCTCGAGAGTGGAAGAGAGCATGGAATGGAATATCTCTTGGATTTCGCTACGGGACGATATACAAAGGGCTGAT
GTCCTTGTT-AACCACAAGGTCAAAGTTATCGGC-------ACCACTAACTTTGATGCCGGTTATCGTGGCCTTGCAGCG
TGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACCTTCATACACGCCAACACTGCCATCTAATTGGGGTCGACAGCC
TGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAATTCCATATCGTTTTCTCCCTTTCCTTTTACCGGCACTCT
GTATGCTCACGGGCGCGCGATGTGCCCAGATATTTCCGTGCCATGGCAATCT-------------TGCTA-----ACCGA
CGATCTTTGTA--GGTGGGAACGGATGGACATGGTCAAGCCGTGGCATCAGAATTT-GCCCAGCTCCGGCAGCTACCAGA
TTCTTCAGTCACGGGACTCTCGGCATAGGAACAAGATTAACCAATAACAGCTCGCATTTCCTTTTCGTGCAAT-CCAGTG
CGGCGCGAGCACATGACGCCCGGCGATATAAGCTGCTTTTCTCAGAGACTTTAGTAAGTCGGCACAA-------------
------------------AAATCCGCAGCGAAGAGGGTAAATCCTCCCAGGAATGGGACGGTAGTGCGTGATCGATTGCT
CCGGACCACCAGCCCAATGATCAAGCGCTATAAATAGGGCACGGGGCATCCACTGCAAGCACAACACAGGACGAACCAGT
GG-----AGAGCTCAAGGAAGATACCATGGAGTGCGGCCGTAAGCAATGGCAAGCGCAGCTGGCGGGGCTCGCGCTCGCG
TTCCTCCTCTTTGCGCCTGCGTTCGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTGGCGTCGCCGGG
GAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAACCCTGACGGTTCCACCT
GGAAGTACGAGTGGGGATGGTCTGCTGGGCCTGGTGGAAAGGGCTCC------------GGTTACGGTTACGG------T
GGCAGCGGTGATGCAGGCGGCGGGGCCGAAGGTGGTGGCAGTGGGAGAGGCGGTGGCGGAGGAAGCGGAAGAACGTTTGG
TCCACGCGATCGGGGATACGGAGGACATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGGGGAAGGCGCGT
TTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGGAGAAGAAGCAGGACGGT
GGCGGTAAAAACTGAAGCCGCCTGCGTCGTTATTACACTCTTAAGCCATGCAGAGATGCGATCAGTATACGTCATGGCAG
AAATCATAATGCTAATATAGCTAAAGCAGTCTATATATCTATAG------ACGATGGTGTACTTGTACGGTTGTATGGTG
TACTTGTACGGTTGAACCCTAT-GAATGGTGTATATGATTGTTGCATGTTCTCTCAGTCTCGACCCGATCCGTATCAGGG
GTCGATGTGCTGATGCATGTATATATCACTTCGCTTCGTTTTTTTCTCTGCCTGATGCCAATCGCACAATATAATCGACG
ACTCGACGAGGTTAAGTAAAGGTGCTTAGAGCGGGCGCCTCGAACAGCCTTAAATCGTCTGGACGGGCGGATCGATCACC
GTTCGATCTAAAAAATAACCTATCCGAGCACCTCAAATCGGCCTCATAACCTGCAAAGATGTAGGCGGATATGAGGTGAC
CCCGGGTGCGACCGGATGGGTTTGCCATGTCAGCATAACCCACGGTTGTCCTCATAAAATATTCCAATCTGGAAATTCTA
GTTCACTTTACTTCACTTAAGCTCTGTCTCTTCTCCGCCCCTTCTCTAGTTTCTCCTATTTTGATTCAATCTGATGGCTC
CGGTGAGCATGCCAAGCTCCGACAGCCACTCCAACGACGACGCCATCGATGTCGACGAGGAACTGGCCCTCCGCATTGCG
CTGGAGCAGTCGTGGGTGGACACGAGGGAGGGAGGGGGGCAGCTCCGGATCTGCTTCGTCCCCGCTTGCCCGCTGACGCA
GTGCAGACGCCGGAGTGGGCCCCTTCCGGCCGCGCGCAGCTCCTCAAGGGCTGGTCAATCCACGCTGCCCCTTCGTCGTC
CACCTCCCCCGTCTGCCACTGCTCCGCAAGGGCAGCGTTAGGTTCTAGTGCCCATTCCGCTGGCTTCGCGGACGCGCGCG
TCGCGAGGGGCAGCGGGCAAGGGAGAGGGAGGCGGCGGAGCAATCCGTTTGCCGCCGTCGTG
>chr6D_251
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----------GAGTGAGGAATAGAGCATGGAATGGAATATCTCTGGAATTTCGCTACCGGACGGTACACAAAGGGCTGAT
GTCCTTGTTAAACCACAAGGTCAAAGTTATCGGTTAAGCTTACCACTAACTTTGATGCCGGTTATCGTGGCCTTGCAGCG
TGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACTTCCATACACGCCAACACTGCCATCTAATGGCGGTCGACAGCC
TGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAACTCCATATCGTTTTCTCCCTTCCCTTTTACCGGCACGCT
TTGTGCTCACGGGCGCGCGATGTGCCCAGATATTTCCGTGTCATGGGCTCATGGCAGTCTTGCTGTGCTGCATGCACCGA
CGATCTTTGTA--AGTGGGAACGGACGGACATGGTCAAGCCGTGGCATCAGAATTTTGCCCAGCTCCGGCAGCTACCAGA
TTCTTCAGTCACGGGACTCTCGGCATAGGAACAAAATTAACCAATAACAGCTTGCTTTTCCTTTTCTTGCAATTCCAGTG
GGCCGCGAGCACATGACGCCCGGCGATATAAACTGCTTTTCTGAGAGATTTTAGTAAGTCGGCACAA-------------
------------------AAATCCGCAGCGAAGAGGCTAAATCCTCCCAGGAATGGGACGGTAGTGCGTGATCGATTGCT
CCGGACCACTAGCCCCATGATCGAGCGCTATAAATAGGGCACAGGGCATCCACTGCAAGCACATCACAAGACGAACCCAG
ACGGTCAAGAGATCAAGGAAGATACCATGGAGTGCGGCCGTAGGCAATGGCAAGCGCAGCTGGCGGGGCTCGCGCTCGCG
TTCCTCCTCTTTGCGCCTGAGTTGGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTGGCGTCGCCGGG
GAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAGCCCTGACGGCTCCACCT
GGAAGTACGAGTGGGGATGGGCTGCCGGGCCTGTTGGAAAGGGCTCCGGTTTCGGATACGGTTACGGTTACGG------T
GGCAGCGGTGATGCAGGCGGCGGGGGCGAAGGTGGTGGCA------------GTGGCGGAGGAAGCGGAAGAACGTTTGG
TCCACGCGATCGCGGATACGGTGGATATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGGGGAAGGAGCGT
TTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGCAGAAGAAGCAGGACGGT
GGCGGTAAAAACTGAAGCCGCCTGTGTCGTTACTCTCTT----AGCCATGCAGAGATGCGATCAGTATACGTCATGGCAG
AAATCATAATGCTAATATAGCTAAAGCAGTCTATATACTTCTATAATTAAACGATGGTGTACTTGTACGGTTGTA-----
-----------------CCTAT-GAATGGTGTATATGATTGTTGCATGTTCTCTCAGTCTCGACTCGATCCGTATCAGGG
GTCGATGTGCTGATGCATGTATGTATCACTTCGCTTCGTATTTTTCTTTGCCTGATGCCAATCGTCCAATATAATCGACG
ACTCGACGAGGTTAAGTAAAGGTGTTCAGAGC------------------------------------------------
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>chr6B_264
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-----------------------AGCATGGGATGGAATATCTCTGGGATTTCCCTACCGGACGGTATACAAAGGGCAGAT
GTCCTTGTTAAACCACAAGGTCGAAGTTATCGGCTAAGCTTGCCACTAACTTCGATGCCGGTTACCGTGGCCTTGCAGCG
TGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACCTTCACACACGCCAACACTGCCATCTAATGGCGGTCAACAGCC
TGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAATTCCATATCGTTTTCTCCCTTTCCTTTTACCGGCACGCT
TTGTGCTCACGGGCGCGCGATGTACCCAGATATTTCCGTGCCATGGCAATCT-------------TGCTACATGCACCGT
CGATCTTTGTAAGAGTGGGAACGGACGGACATGGTCAAGCCGTGGCATCAGAATTTTGCCCAGCCCTGGCAGCTACCAGA
TTCTTCAGTCACGGGACTCTCGGCATAGGAACAAGATTAACCAATAACAGCTCGCATTTCCTTTTCGTGCAATTCCAGTG
CGCCGCGAGCACATGACGCTTGACTAGATAAGCTGCTTTTGCGAGAGACTTTAGTAAGTCGGCACAGGAAAAATCGCGAC
GTCGCAAGGCAAACGACCAAAGCCGCAGCGAAGAGGGTAAATCCTCCCAGGAAGTGGACGGTAGTGCGTGATCGATTGCT
CCGGACCACCAGCCCCATGATCGAGCGCTATAAATAGGGCGCGGGGCATCCACTGCAAGCACATTACAGGACGAACCCAG
AAGGTCAAGAGCTCAAGGACGATACCATGGAGAGCGGCGGTAAGCAATGGCAAGCGCAGCTGGCGGGGCTCGCGCTCGCG
TTCCTCCTCTTTGCGCCTGCGTTGGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTGCCGTCGCCGGG
GAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCATCCCTGACGGTTCCACCT
GGAAGTACGAGTGGGGATGGGCTGCCGGGCCTGTTGGAAAGGGCTCC------------GGTTTCGGATACGGTTACGGT
GGCAGCGGTGATGCAGGCGGCGGGGGCCAAGGTGGTGGCA------------GTGGCGTAGGAAGCGGAAGAACGTTTGG
TCCACGCGATCGCGGATACGGTGGATATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGGGGAAGGAGCGT
TTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGG--------------------T
GGCGTTAAAAACTGAAGCCGCCTGTGTCGTTACTCTCTT----AGCCATGCAGAGATGCGATCAGTATACGTCATGGCAG
AAATCATAATGCTAATAAAGCTAAAGCAGTCTATATACTTCTATAATTAAACGATGGTGTACTTGTACGGTTGTA-----
-----------------CCCTACGAATGTTGTATATCATTGTTGCATGTTCTCTCAGTCTCGACTCGATCCGTATCACGG
GTCGATCTGCTGATGCATGTATGTATCACTTCGCTTCGTATTTTTCTCTGCCTGATGCCAATCACCCAATATAATTGACG
ACTCGACGAGGTTAAGTAAAG-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S-S----S-----------------------S------------S-----S----------------
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------------------------------------------------------------------S-S-----------
-----------------------------------------------------------------------------S--
S-S-----------------------------------------------------------------------------
-------------S-----------S------------------------------------------------------
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--S---------------------------------------S-------------------------------------
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---------------S------S----------------------------------------S-------------SSS
SS------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------S----S-------S----------------------------------------------
-------------------------S--------------SSSSSSSSSSSS----------------------------
------------S--------S---S-------------------------------------------------S----
--------------------------------------------------------------S-----------------
------------------------S-------S-SSSS-SSSS-------------------------------------
-------------------------------------SS-S--S-------------------------------SSSSS
SSSSSSSSSSSSSSSSS-----------------------------------------------S---------------
----------------------S----------------S-------------------------S--------------
------------------------S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_983
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---GACCACCAGCCCAATGATCA---------------------------------------------------------
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>reverse_2522
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-----------------------------------------GTTCTAGTGCCCATTCCGCT-------------------
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