>input_sequence_77207
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------------------------------------------------------------------------------AT
GGATGCGGAGGTGTGGACGCCGCGTTCGGGAGGGCGGTTGAAGCCTACGAGTCGGAGCAGTAGCATCGGGAGCGGTGGGA
GCCCAGGGTGCGGGAGCAACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGC
GGGGAGAACCATGGCGGTGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAACATCCATGAGTT
CGACGCATCCAACATCGGTATCCGGAACCAGCTGCTGAAGCACGCGGCCTCGGCGTACCTACAGTCGGCAGTGGTGGTGG
GTGGCAGCGGCGGCGGGGCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCATCGCATTAGCGGCGGGCGTGGG
CGCGGGCATGTGCTAGAGGAGGCGTGCTCATGGCAGGGGTGCGTCGACGACCCCGCCGAGATCTGTGCCGCTTTCCTCAC
CCAGTCCGCCCGCCGTGTTGCCGCCTTCTTCGCGGGCATATGGACCTAG-------------------------------
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>chr5B_1_TraesCS5B01G032300
TTTGATGAGTTTGTCCAAATACAACAACAAATTCGGTGACCAACTCATGAGCAGCTTAAGAAATATCTGATTGAGCATAT
GTGGGTTGTCCATCCATTTCAATCGGCCGGCCACCCTCTGACTAAAAGAACCCCAACTGTTGAAGATATCCCCAACACCT
TGAATCATCC--------------TTTATAGAGTAGGGTGAAAGCCTGTTTTAAGAGAGTAAGAC--AATTTGACGACAA
AGCA--------ATAGTCACCATGAACAACAGATGCGGTCTGACTAGCACTCGTCTCTTTGGCCCAGTTCCCCATGAGCT
CAAGACGAAGAAGCATATGAAGATCTTTGCGTTGGCTGAGCACATTGTTTGCGACATCATCGTGCTTAGTCATATCTCGC
AATTATTTCCCTGGAACGGAACAAAAATATTAGGTCATTTGTCATTTCCAAGATTGCTCCGATGAAGTTTTGGTTGCCCT
TTTGTTGTTAATGTATTTCCCTTTTGCTTCTGTAATTTGTTATTGGATGGATGCACTCTAATCAGAGAATATGTACCCCG
ACAAAATTGAAA--TTTGTATCGCATTTAACGTGAATGTTTTGTTGGAATGGAGGAAATATATTCCTTATTTGCTCTCTT
TTACCTGGATCATCATGATGTGATGCCTGTAATTTTCTGGCCACACAATGCTGAGTTCATA------------CATTTAC
ATGATGTCCTATCATTACCTTCCTGATACATGCAGAGGATATTTTCGAAACCCAATTTTAGAAGATATTAGATTCTCCCT
TCGCGCCTTAACCGCATTGAAAGATTTTGGGAGGGAGGCATGCAGAATTGTAGAGAGTTTCTTGCCAAGTTTGGTTGGTC
AGGGTTAGGCTTTTCCCTCCTATAACTAAGGTTATCCATTGGAGTATGCATCTTGTTTCTCTCCTCTCATTTCCGCTCTC
TCCTCATTGATGGCTACACAATCTTGTGGGTAAGCAAGACAAGAATTTGATTGGGGCCGCGGTGAGCGCTCTGGTGCTAT
GGATGCGGAGGTGTGGACGCCGCGTTCGGGAGGGCGGTTGAAGCCTACGAGTCGGAGCAGTAGCATCGGGAGCGGTGGGA
GCCCAGGGTGCGGGAGCAACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGC
GGGGAGAACCATGGCGGTGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAACATCCATGAGTT
CGACGCATCCAACATCGGTATCCGGAACCAGCTGCTGAAGCACGCGGCCTCGGCGTACCTACAGTCGGCAGTGGTGGTGG
GTGGCAGCGGCGGCGGGGCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCATCGCATTAGCGGCGGGCGTGGG
CGCGGGCATGTGCTAGAGGAGGCGTGCTCATGGCAGGGGTGCGTCGACGACCCCGCCGAGATCTGTGCCGCTTTCCTCAC
CCAGTCCGCCCGCCGTGTTGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGACAAC------
---------CATCGGTTGTGGTGCTTCCATCATTATTGTTGTTGTTGTCGTTGTTGTTGTATCTATATTGTGAGATATAT
GTTGGCCTGGCA------TTCTCTTGCCATGTTTGTTTAGTCAGATAGTAGAATTTTCCATAGTGTTATGGCAAGCATAT
CCTTGGAGTTGCAGCAACAGTGCTTTGTGATTTGAGGAACGGGTAGCAGGCATTTGTTGTTGAATACTAGT---TGCATA
AAGCGAGATGGCCGCTGAAAATCTCACATATTCTCTCCGTCCGAAAATAATTGTCGGAGTAATGGATGTATCTAGTTGTA
TTTTAGTTTTAGATGCATCCATTTTTACCCATTTTCGCGACAAGTATTTCTGGACGGAGGGAGTACTTTGGAGGGAACAT
GTAGAAATAGAGAAGTTTCTCTTGGCAACACTGTTCATCGCTATAATTTACTGGAATGGGGCAAAATAAAAAAAGAGGAA
ATTCTGTTTGAT--------------------------------------------------------------------
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-------------------------------------------------------CTTAGTATCAAAGGAGAAACACACA
ATTTTTTTATACAACTCATCCGACCGCCTCTTAGATTTCCTGCACAAGAATGGAAATGGGGTCTTGAACGACTTAAACGT
AATAACATCTTAATTGTACTTTTAATGTGGATTTTAACTTGATCATGCTTATTAGGATTCCGGTGTTTTTCTGTTACTAT
GGAC-TAAACACTTACGTTTTCA----------------------------------------------ATTTTCTATGC
GTACCATTTCTTTGTTTTGCAGATATAGT--ACAATCATAATTCACTGT---TTTTTCCTATTCCTCTGTTTTTAAAACA
CAGTGAACTAAAGAGTCGCTTAATTATACTTTGAAATGAATAGGATCGTAAAACTCTACTCCACATGAACAACAAAGGAG
TAGAGTGCAAAAGAATGCTTATGAGGAATAGTTTTAAAGATCCTAATCTTGCAAAACTATGCGGGAAAAATCGCTAATTA
TGATGACTATGGATGCGGAGGTGTGGACGCCGTGGTCGGATCGGCGGT
>chr5A_87
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------TGTCCATCCATTTCGATCGGGCGGCCACCCTCTGACTAAAAGAACCCCAACTGTCGAAGATATCCCCAACACCT
TGAATCGTTTGGCCTATGACTTTATTTATAGAGTAGGACGGAAGCCTGTATTAAGAAAGTAAGACAAAATTCAATGACAA
AGCCATAGTCACC-------------------ACGTGGTCCGACTAGCACTCGTCTCTTTGGCCAAGTTCCCCATGAGCT
CAAGACGAAGAAGCATATGAAGATCTTTGTGTTGGCTGAGCACATTGTTTGCGACATCATCATGCTTAGTCATATCTCAC
AATTATTTCCCTGGAACGGAACAAAAATGTTGGGTCATTTGTCATTTCCAAGATTGCTCCGAGGAAGTTTTGGTTGCCCT
TTTGTTGTTAATGTATTTCCCTTTTGCTTCTGTAATTTGTTATTGGATGGATGCACTCTAACAAGAGAATATGTACCCCG
ACAAAATTGAAA--TTTGTATCGCATTTAATGTGAATGTTTTGTTGGAATGGAGGAAATATATTCCTTATTTGCTCTCTT
TTACCTGGATCATCATGATGTGATGTCTGTAATTTTCTGGCCACACAATGCTGAGTTCATATCTGAGTTCATACATTTAC
ATGATATCCTATCATTACCTTCTGGATACATGCAGAGGATATTTTCGAAACCCAATTTTAGAAGATATTAGATTCTCCCT
TTGCGCCTTAACCGCATTGAAAGATTTTGGGAGGGAGGCATGCAGAATTGTAGAGAGTTTCTTGCCAACTTTGGTTGGTC
AGGATTAGGCTTTTCCCTCCTATAACTAAGGGTATCCGTTGGAGTATTCATCTCGTTTCTCTCCTCTCATTTCCGCTCTC
TCCTCATTGATGGCTACACAATCTTGTGGGTAAGCAAGACAAGAATTTGATTGGGGTGGCGGTGAGCGATTTGGCCCCAT
GGATCCGGAGGTGTGGACGCCGCGATCGGGAGGGCGGTCGAAGCCGACAAGCCGGAGCAGCAGCACCGGGAGCGGTGGGA
GCCCAGGGTGTGGGAGCAACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGC
GGGGAGAACCATGGCAGTGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAATATCCATGAGTT
CGACGCATCCAACATCGGTATCCGAAACCAGCTGCTGAAGCACGCGGCCTCAGCGTACCTACAGTCGGCGGTGGTGGTGG
GTGGCAGCGGCGGCGGGGCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCACCGCATTAGCGGCGGGCGTGGG
CGCGGGCATGTGCTAGAGGAGGCGTGCTCATGGCAGGGGTGCGTCGATGACCCCGCCGAGATCTGCGCCGCTTTCGTCAC
CCAGTCCGCTCGTCGTGTCGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGGCAGCCATCGG
TAGGCCATTTATTGGTTGTGGTGCTTCAATCATTGTTATTGTTGTTGTTGTTGTTGTTGTATCTATATTGTGAGGTATAT
GCTGGCCTGGCTAAGGGGTTCTCTTGCCATGCTTGTTTAGTCAGA-------ATCTTCAATAGTATTATGTCAAGCATAT
CTTTGGAGTCGTCGCAACAGTGCTTTGTGATATGAGGAACGGGTAGCAGACATTTGTTGTTGAATACTAGTCGTTGCATA
AAGAGAGATGGCCACTGAAAATCTCACATGCTTCTTTCGTTCATAGGGGAAAA---------------------------
--------------------------------------------------------------------TGGAGGGAACAT
GTAGAAATAGAAAAGTTTCTTTTGGCAACATTATTCATCGATGTAATTTACAGGAATGGGGCAAAAATAAAAAAATAGAG
AAAAAATGTTTGATCTTAGGGCCTGTTCGGCAACTCCCCAGCTCCTGGCTTTGCCGAACCCGCTGGTGGAGCTGGGCGGA
ACGGTTGGACTCCGCGAAGCTAGCTTCCAAGATCTGGGGCTGGTCGTAGTACAAAAACCTGGAGCTGGTGTTTCGCCGAT
CTCAGAAATTGGAAAACGAGGAGTTCAGGCTATTTATGGAGAGTTGCCACCGCCAAGTCAAAGAAAACGATTCGTTCGAG
TGGAAAACAGAAGGAGCTTGTCGCTTCCCTCCCTACCAGGCTGGAATGGAGCTTAATGGGCTAGGCAGCTAGCGGCCCAA
GACTAGCGATTGGGATTCATGGAGTTCGGTTGCCGAACAGTTTTTCCGATCTGAGATTTTTGTCAAGAAGCTGGAAGCTA
GATCGAGAAGCCGGATTTGAGGATTTACTGGAGTTGGGCAGTTGCCGAACAGGCCCTTAGTATCAAAGGAAAAACACAAC
AAAAAAAATTACAACTCATCCTACCTCCTTTTAGATTTCCTACACAAGAACGGAAATGGGGTCTTCAACGACTTAAACGT
AACAACATCTTAATTATACTTTGCATGTGGATTTTAACTTGATCATG-TTATTAGGATTCCGGTGTTTTTCTGTTACTAT
GAACTTAAACACTTATGTTTTCAAAATTTATGTTTCTCTATTCCGGCGTTTGT---------------AATTTTCTATGT
GTACCATTTCTTTGTTTTGCAGATATAGT--ACTATCATACTTCACTGT---TTTTTCCTGTTCCTCTGTTTTAAAAATA
CTGTGAACTAAAGAGTTGCTTAATAATACTTTGAAATGTATAGGATCGTAAAACTATACTCCACATGAACAACAAAGGAG
TAGAGTGCAAAATAATGCTTTGAAGGAATAGTTTTAAGGATCCTAATCATTAAAAACTATGCGGGAAAAACCGCTAATTG
TAACGACTATGGATGCGGAGGTGTGGACGCCGTGGTCGGATGGGC---
>chr5D_171
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------------------------TTTATAAAGTAGGGCTAAAGCTTGTTTTGAGAAAGTAAGACCAAGTTCGATGACAA
TGCTATACGGCTATAGTCACCATGAACAACAGACGCGGTCTGACTAGCACTCATCTCTTTGGCCCAGTTCCCCATGAGCT
CAAGACGAAGAAGCATATGAAGATCTTTGTGTTGGCTGAGCACATTGTTTGGGACATCACCATGCTTAGTCATATCTCAC
AGTTATTTTCATGGAACGGAACAAAAATATTGGGTCATTTGTCATTTCCAAGATTGCTCCGAGGAAGTTTTGGTTGCCCT
TTTGTTGTTAATGTATCCCCCCTTTGCTTTTGTAATTTGTTATTGGAAGGATGCACTCTAAGCAGAGAATATGTACCCTG
ACAGAATCAATTATTTTTTATCGCATTTAATCTGAATGTTTTGTTGGAATGGAGAAAACATATTCCTTGTTTGCTCTCTT
TTACCTGGATCATCATGATGTGATGCCTGTAATTTTGTGGCCACACAATGCTGAG------------TTCATACATTTAC
ATGATGTCCTATCATTAGCTTCCTGATACATGCAGAGGATATTTTCGAAACCCAGTTTTAGAAGATATTAGATCCTCCCT
TTGCACCTTAACCGCATTGAAAGATTTTGGGAGGGAGGCATGCAGAATTTTAGAGAGTTTCTTGCCAAGTTTGGTTGGTC
AGGGTTAGGCTTTTCCCTCCTATAACTAAGGGCATCCGTTGGAGCAATCATCTCGTTTCTCTCCTCTCATTTCCGCTCTC
TCCTCATTGATGGCTACACAATCTTGCGGGTAAGCAAGACAAGAATTCGATTGGGGTGGCGGTGATCGCTCTGTTGCTAT
GGATCCGGAGGTGTGGACGCCGCGTTCGGGAGGGCGGTCGAAGCCAACAAGCCGGAGCAGTAGCACCGGGAGCGGTGGGA
GCCCAGGGTGTGGGAGCAACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGC
GGGGAGAACCATGGCAGTGGCGGCTGTGCGTTCCGTGCGGGGAGCTGGAGGGACTGCAACAATGACAACATCCATGAGTT
CGACGCATCCAACATCGGTATCCGGAACCAGCTGCTGAAGCACGCGGCCTCGGCGTACCTACAGTCGGCGGTGGTGGTGG
GTGGCAGCGGCGGCGGGGCGCGCGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCATCACATTAGCGGCGGGCGTGGG
CGCGGGCATGTGCTAGAGGAGGCGTGCTCGTGGCAGGGGTGCGTCGACGATCCCGCCGAAATCTGCGCCGCTTTCGTCAC
CCAGTCTGCCCGCCGTGTCGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGGCAGCCATCGG
TAGGCCATTCATCGGTTGTGGTGCTTTCATCATTGTTGTTGGTGTTG---------TTGTATCTATATTGTGAGATATAT
GTTGGCCTGGCTAAGG---------GCCATGTTTGTTTAGTCAGATAGA--AATCTTCCATAGTGGTATGACAAGCATAT
CCTTGGAGTTGTCACGACAGTGCTTTGACATTTG----------------------------------------------
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>chr5D_2073
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-----------------ATCCGACCTTCTTTTAGATTTCCTACACAAGAACGGAAATGGGGTCTTCAACAACTTAGACGT
AATAGCATCTTAATTATACTTTGCATGTGGATTTTAACTTGATCATG-TTATTAGGATTCCGGTGTTTTTCTGTTACTAT
GAACTTAAACACTTATGATTTCAAAATTTATGTTTCTCTATTCTCGTGAGCTGAACACTTGTGTTTGCAATTTTCTATGC
GTACCATTTCTTTGTTTTGCAGATATAGTATACTATCATACTTCACTGTTTTTTTTTCCTATTCCTCTATTTTTAAAATA
CTGTGAACTAAAGAGTCGCTTAATAATACATTGAAATGTATAGGATCATAAAACTATACTCCACGTGAACAACAAAGGAG
TAGAGTGCAAAAGAATGCTTATGAGGAATAGTTTCAAGGATCCTAATCTTGCAAAACCATGCGGGAAAAATCGCTAATTA
TAACAACTATGAATGCGGAGGTGTGGACGCCGTGGTCAGATGGGCGGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------S-----S---------------------------------S-------------------
------S-SS----------------------------S-----------------S--------------S--S-----
---S-----------------------------S----------------------------------------------
-----------------------------S-------------------------------S----------------S-
-------------------------------S------------------------------S-----------------
-------------------------------------------------------------S------------------
------------------------------S-------------------------------------------------
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-S------------------------------------------------------------------------------
-------------------------------S-----S---------S-----S--------------------------
--------------------------------------------------------SS----------------------
----S---------------------------------S------S--S--S-------------S--------------
----------S---------------------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------------------------------------------S----------
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-----------------------------------------------------------------S---------S----
------------------S--------------------------------------------------S--S-------
----------------------------------S-------------S-------------------------------
-----------S------------------------------------SSS---S---------------S---------
-----------SS------------------------------------S------------------------------
---S---------S---------------SS-SSS-S---S-SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----------S--------S---------S-S-------S-S--------S--------------SS------SSS--S
-SSSSS-S-SSS--------------------------------------------------------------------
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----------------------------------------------------------------------S-------SS
-SSSSSSSS----------------S---S-----------S--------S--------------S--------------
---------------S------SS-----------------------S--------------------------------
-S-------------S----------------------------------------------------------------
---------------------------------S------S-------------------------------------S-
-S----------------------S-------------S----------------S------------------------
-------------------------------------S------------------------------------------
-S-S-------------------------------------S------
>forward_52
--------------------------------TCGGTGACCAACTCATGAGC----------------------------
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>reverse_1131
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----------CGGGAGCAACATCGAGTACA--------------------------------------------------
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>forward_53
---------------------------------CGGTGACCAACTCATGAGCA---------------------------
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>reverse_1844
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---CGAGATGGCCGCTGAAAATC---------------------------------------------------------
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