>input_sequence_77201
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-------------------------------------------------------------ATGGATCCGGAGGTGTGGA
CGCCGCGATCGGGAGGGCGGTCGAAGCCGACAAGCCGGAGCAGCAGCACCGGGAGCGGTGGGAGCCCAGGGTGTGGGAGC
AACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGCGGGGAGAACCATGGCAG
TGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAATATCCATGAGTTCGACGCATCCAACATCG
GTATCCGAAACCAGCTGCTGAAGCACGCGGCCTCAGCGTACCTACAGTCGGCGGTGGTGGTGGGTGGCAGCGGCGGCGGG
GCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCACCGCATTAGCGGCGGGCGTGGGCGCGGGCATGTGCTAGA
GGAGGCGTGCTCATGGCAGGGGTGCGTCGATGACCCCGCCGAGATCTGCGCCGCTTTCGTCACCCAGTCCGCTCGTCGTG
TCGCCGCCTTCTTCGCGGGCATATGGACCTAG------------------------------------------------
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>chr5A_1_TraesCS5A01G032400
TCAGGTCCGCTCCTCCTAACCACGAGCTAGAGGCGGTGTCTTGCCTGACCCGTCTCGCCCATACGATCCTGTCCATCCAT
TTCGATCGGGCGGCCACCCTCTGACTAAAAGAACCCCAACTGTCGAAGATATCCCCAACACCTTGAATCGTTTGGCCTAT
GACTTTATTTATAGAGTAGGACGGAAGCCTGTATTAAGAAAGTAAGACAAAATTCAATGACAAAGCCATAGTCACC----
---------------ACGTGGTCCGACTAGCACTCGTCTCTTTGGCCAAGTTCCCCATGAGCTCAAGACGAAGAAGCATA
TGAAGATCTTTGTGTTGGCTGAGCACATTGTTTGCGACATCATCATGCTTAGTCATATCTCACAATTATTTCCCTGGAAC
GGAACAAAAATGTTGGGTCATTTGTCATTTCCAAGATTGCTCCGAGGAAGTTTTGGTTGCCCTTTTGTTGTTAATGTATT
TCCCTTTTGCTTCTGTAATTTGTTATTGGATGGATGCACTCTAACAAGAGAATATGTACCCCGACAAAATTGAAA--TTT
GTATCGCATTTAATGTGAATGTTTTGTTGGAATGGAGGAAATATATTCCTTATTTGCTCTCTTTTACCTGGATCATCATG
ATGTGATGTCTGTAATTTTCTGGCCACACAATGCTGAGTTCATATCTGAGTTCATACATTTACATGATATCCTATCATTA
CCTTCTGGATACATGCAGAGGATATTTTCGAAACCCAATTTTAGAAGATATTAGATTCTCCCTTTGCGCCTTAACCGCAT
TGAAAGATTTTGGGAGGGAGGCATGCAGAATTGTAGAGAGTTTCTTGCCAACTTTGGTTGGTCAGGATTAGGCTTTTCCC
TCCTATAACTAAGGGTATCCGTTGGAGTATTCATCTCGTTTCTCTCCTCTCATTTCCGCTCTCTCCTCATTGATGGCTAC
ACAATCTTGTGGGTAAGCAAGACAAGAATTTGATTGGGGTGGCGGTGAGCGATTTGGCCCCATGGATCCGGAGGTGTGGA
CGCCGCGATCGGGAGGGCGGTCGAAGCCGACAAGCCGGAGCAGCAGCACCGGGAGCGGTGGGAGCCCAGGGTGTGGGAGC
AACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGCGGGGAGAACCATGGCAG
TGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAATATCCATGAGTTCGACGCATCCAACATCG
GTATCCGAAACCAGCTGCTGAAGCACGCGGCCTCAGCGTACCTACAGTCGGCGGTGGTGGTGGGTGGCAGCGGCGGCGGG
GCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCACCGCATTAGCGGCGGGCGTGGGCGCGGGCATGTGCTAGA
GGAGGCGTGCTCATGGCAGGGGTGCGTCGATGACCCCGCCGAGATCTGCGCCGCTTTCGTCACCCAGTCCGCTCGTCGTG
TCGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGGCAGCCATCGGTAGGCCATTTATTGGTT
GTGGTGCTTCAATCATTGTTATTGTTGTTGTTGTTGTTGTTGTATCTATATTGTGAGGTATATGCTGGCCTGGCTAAGGG
GTTCTCTTGCCATGCTTGTTTAGTCAGA-------ATCTTCAATAGTATTATGTCAAGCATATCTTTGGAGTCGTCGCAA
CAGTGCTTTGTGATATGAGGAACGGGTAGCAGACATTTGTTGTTGAATACTAGTCGTTGCATAAAGAGAGATGGCCACTG
AAAATCTCACATGCTTCTTTCGTTCATAGGGGAAAATGGAGGGAACATGTAGAAATAGAAAAGTTTCTTTTGGCAACATT
ATTCATCGATGTAATTTACAGGAATGGGGCAAAAATAAAAAAATAGAGAAAAAA-TGTTTGATCTTAGGGCCTGTTCGGC
AACTCCCCAGCTCCTGGCTTTGCCGAACCCGCTGGTGGAGCTGGGCGGAACGGTTGGACTCCGCGAAGCTAGCTTCCAAG
ATCTGGGGCTGGTCGTAGTACAAAAACCTGG-------------------------------------------------
------------AGCTGGTGTTTCGCCGATCTCAGAAATTGGAAAACGAGGAGTTCAGGCTATTTATGGAGAGTTGCCAC
CGCCAAGTCAAAGAAAACGATTCGTTCGAGTGGAAAACAGAAGGAGCTTGTCGCTTCCCTCCCTACCAGGCTGGAATGGA
GCT------------------------------------TAATGGGCTAGGCAGCTAGCGGCCCAAGACTAGCGATTGGG
ATTCATGGAGTTCGGTTGCCGAACAGTTTTTCCGATCTGAGATTTTTGTCAAGAAGCTGGAAGCTAGATCGAGAAGCCGG
ATTTGAGGATTTACTGGAGTTGGGCAGTTGCCGAACAGGCCCTTAGTATCAAAGGAAAAACACAACAAAAAAAATTACAA
CTCATCCTACCTCCTTTTAGATTTCCTACACAAGAACGGAAATGGGGTCTTCAACGACTTAAACGTAACAACATCTTAAT
TATACTTTGCATGTGGA
>chr5B_70
---------------------------------------------------------------------TGTCCATCCAT
TTCAATCGGCCGGCCACCCTCTGACTAAAAGAACCCCAACTGTTGAAGATATCCCCAACACCTTGAATCATCC-------
-------TTTATAGAGTAGGGTGAAAGCCTGTTTTAAGAGAGTAAGAC--AATTTGACGACAAAGCA--------ATAGT
CACCATGAACAACAGATGCGGTCTGACTAGCACTCGTCTCTTTGGCCCAGTTCCCCATGAGCTCAAGACGAAGAAGCATA
TGAAGATCTTTGCGTTGGCTGAGCACATTGTTTGCGACATCATCGTGCTTAGTCATATCTCGCAATTATTTCCCTGGAAC
GGAACAAAAATATTAGGTCATTTGTCATTTCCAAGATTGCTCCGATGAAGTTTTGGTTGCCCTTTTGTTGTTAATGTATT
TCCCTTTTGCTTCTGTAATTTGTTATTGGATGGATGCACTCTAATCAGAGAATATGTACCCCGACAAAATTGAAA--TTT
GTATCGCATTTAACGTGAATGTTTTGTTGGAATGGAGGAAATATATTCCTTATTTGCTCTCTTTTACCTGGATCATCATG
ATGTGATGCCTGTAATTTTCTGGCCACACAATGCTGAGTTCATA------------CATTTACATGATGTCCTATCATTA
CCTTCCTGATACATGCAGAGGATATTTTCGAAACCCAATTTTAGAAGATATTAGATTCTCCCTTCGCGCCTTAACCGCAT
TGAAAGATTTTGGGAGGGAGGCATGCAGAATTGTAGAGAGTTTCTTGCCAAGTTTGGTTGGTCAGGGTTAGGCTTTTCCC
TCCTATAACTAAGGTTATCCATTGGAGTATGCATCTTGTTTCTCTCCTCTCATTTCCGCTCTCTCCTCATTGATGGCTAC
ACAATCTTGTGGGTAAGCAAGACAAGAATTTGATTGGGGCCGCGGTGAGCGCTCTGGTGCTATGGATGCGGAGGTGTGGA
CGCCGCGTTCGGGAGGGCGGTTGAAGCCTACGAGTCGGAGCAGTAGCATCGGGAGCGGTGGGAGCCCAGGGTGCGGGAGC
AACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGCGGGGAGAACCATGGCGG
TGGCGGCTGTGCGTTCCGCGCGGGGAGCTGGAGGGACTGCAACAACGACAACATCCATGAGTTCGACGCATCCAACATCG
GTATCCGGAACCAGCTGCTGAAGCACGCGGCCTCGGCGTACCTACAGTCGGCAGTGGTGGTGGGTGGCAGCGGCGGCGGG
GCGCGTGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCATCGCATTAGCGGCGGGCGTGGGCGCGGGCATGTGCTAGA
GGAGGCGTGCTCATGGCAGGGGTGCGTCGACGACCCCGCCGAGATCTGTGCCGCTTTCCTCACCCAGTCCGCCCGCCGTG
TTGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGACAAC---------------CATCGGTT
GTGGTGCTTCCATCATTATTGTTGTTGTTGTCGTTGTTGTTGTATCTATATTGTGAGATATATGTTGGCCTGGCA-----
-TTCTCTTGCCATGTTTGTTTAGTCAGATAGTAGAATTTTCCATAGTGTTATGGCAAGCATATCCTTGGAGTTGCAGCAA
CAGTGCTTTGTGATTTGAGGAACGGGTAGCAGGCATTTGTTGTTGAATACTAGT---TGCATAAAGCGAGATGGCCGCTG
AAAATCTCACAT--------------------------------------------------------------------
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>chr5D_113
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--------------------------------ACTCCAACTGCCGAGGATGTCCCCAACACCTTGAATCATTCGGTCTAC
GACTTTATTTATAAAGTAGGGCTAAAGCTTGTTTTGAGAAAGTAAGACCAAGTTCGATGACAATGCTATACGGCTATAGT
CACCATGAACAACAGACGCGGTCTGACTAGCACTCATCTCTTTGGCCCAGTTCCCCATGAGCTCAAGACGAAGAAGCATA
TGAAGATCTTTGTGTTGGCTGAGCACATTGTTTGGGACATCACCATGCTTAGTCATATCTCACAGTTATTTTCATGGAAC
GGAACAAAAATATTGGGTCATTTGTCATTTCCAAGATTGCTCCGAGGAAGTTTTGGTTGCCCTTTTGTTGTTAATGTATC
CCCCCTTTGCTTTTGTAATTTGTTATTGGAAGGATGCACTCTAAGCAGAGAATATGTACCCTGACAGAATCAATTATTTT
TTATCGCATTTAATCTGAATGTTTTGTTGGAATGGAGAAAACATATTCCTTGTTTGCTCTCTTTTACCTGGATCATCATG
ATGTGATGCCTGTAATTTTGTGGCCACACAATGCTGAGTTCATA------------CATTTACATGATGTCCTATCATTA
GCTTCCTGATACATGCAGAGGATATTTTCGAAACCCAGTTTTAGAAGATATTAGATCCTCCCTTTGCACCTTAACCGCAT
TGAAAGATTTTGGGAGGGAGGCATGCAGAATTTTAGAGAGTTTCTTGCCAAGTTTGGTTGGTCAGGGTTAGGCTTTTCCC
TCCTATAACTAAGGGCATCCGTTGGAGCAATCATCTCGTTTCTCTCCTCTCATTTCCGCTCTCTCCTCATTGATGGCTAC
ACAATCTTGCGGGTAAGCAAGACAAGAATTCGATTGGGGTGGCGGTGATCGCTCTGTTGCTATGGATCCGGAGGTGTGGA
CGCCGCGTTCGGGAGGGCGGTCGAAGCCAACAAGCCGGAGCAGTAGCACCGGGAGCGGTGGGAGCCCAGGGTGTGGGAGC
AACATCGAGTACACGAGCCTACGCGACATGATGTTGGAAGGAGGCGGTGGCGGTGGCGGCGGCGGGGAGAACCATGGCAG
TGGCGGCTGTGCGTTCCGTGCGGGGAGCTGGAGGGACTGCAACAATGACAACATCCATGAGTTCGACGCATCCAACATCG
GTATCCGGAACCAGCTGCTGAAGCACGCGGCCTCGGCGTACCTACAGTCGGCGGTGGTGGTGGGTGGCAGCGGCGGCGGG
GCGCGCGAGGGCCAGGGGTGCTGCCTGGTACGCCTTTGGCATCACATTAGCGGCGGGCGTGGGCGCGGGCATGTGCTAGA
GGAGGCGTGCTCGTGGCAGGGGTGCGTCGACGATCCCGCCGAAATCTGCGCCGCTTTCGTCACCCAGTCTGCCCGCCGTG
TCGCCGCCTTCTTCGCGGGCATATGGACCTAGCTTAGCTAGTCATAGCATCGGCAGCCATCGGTAGGCCATTCATCGGTT
GTGGTGCTTTCATCATTGTTGTTGG---------TGTTGTTGTATCTATATTGTGAGATATATGTTGGCCTGGCTAAGG-
--------GCCATGTTTGTTTAGTCAGATAGA--AATCTTCCATAGTGGTATGACAAGCATATCCTTGGAGTTGTCACGA
CAGTGCTTTGACAT-------------------------TTGTTGAATACTAGTCGTTGCATAAAGCGAGATGGCCACTG
AAAATCTCAAATGCTTCTTTCGTTCAAAGTGAAAAATGGAGGGAACATGTAGAAAGAGAAAAGTTTCTTTTGGCAACTCT
ATTCATCGATATAATTTACAGGAATGGGGCAAAAT--AAAAACTAGAGAAATGTTTGTTTGATCCTAG------------
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>chr1B_1958
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------------------------------------------------------------------AGGGCCTGTTCGGC
AACTCCCCAGCTCCTGGCTTCGCCGAACCCGCTGGTGGAGCTGGGCCGAACGGTTGGACTCCGCGAAGCTAGCTTCCGAG
ATCTGGGGCTGGTCGTAGTACAAAAACCTCGAAATCACTAATTAAGGAGTACTCCTTGCGAAGATCACTCCAACTTTCCC
AGGTTGCGACAAAGCTGGTGTTTCGCCGATCTCAGAAATTGGAAAACGAGGAGTTCAAGCTATTTACGGAGAGTTGCCAC
CGCCAAGTCAAAGAAAACGATTCGTTCGAGTGGAAAACAGAAGGAGCTTGTCGCTTCCCTCCCTACCAGGCTGGAATGGA
GCTACAGGTCAAAAAAAAAAGAGAGGCTGGAATGGAGCTTAATGGGCTAGGCAGCTAGCGGCCCAAGACTAGCGATTGGG
A-TCATGGAGTTCGGTTGCCGAACAGTTTTTCCGATCTGAGATTTTTGTCAAGAAGCTGGAAGCTAGATCGAGAAGCCGG
ATTTGAGGATTTTCTGGAGTTGGGCAGTTGCTGAACAGGCCCTAAG----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
---S-----S-----------------------------------------------------------S--S--S---S
--------------------S--S--------S---------------S------S----------S---SSSSSS----
------------------S----S-----------------------S--------------------------------
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-----------S--------------------------------------------------------------------
--------------------------------------------SS----------------------------------
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--------S-----------------------------------SSSSSSSSSSSS------------S-----------
-----SS-------------------------------------------------------------------------
---------------------------------------------------S--------------S-------------
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---------------------------------------------------S-S---SS-S-------------------
-------S--------------------S--------------S------------------------------------
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---------------------------------------------------S----------------------------
-------S--------------------------S---------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------S-----------------------------------------S--S----
------------------------------------------------------------------------S--S----
----------S---------S----------S-------------------------S------S--------------S
S-------------S--------------------------S-----S-----S----------S-------S-------
--------------S-----------------S---------------------------------S-------------
--------------------------S--S-S-----------------------S---------------------SS-
----------S-----------------------SSS-----S--------SSS----------S---------------
--------------------S-------------------------S------------------------------S--
-----------------------------S--------------------------------------------------
---------------------------------------------------------S--------S-------------
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-S------------------------------------------------------------------------------
------------S------------------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_34
--------------CCTAACCACGAGCTAGAGGC----------------------------------------------
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>reverse_1745
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----------------------------------------------------------------TTTGGAGTCGTCGCAA
CAGT----------------------------------------------------------------------------
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