>input_sequence_77198
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-------------------------------------------------ATGGCGGCCGTGGGGTGGTTTCTAGCCGCCG
GAGCCATCGTCATGGCCACCCTGCTGTCAGGCTCCGCCCTGCTGACGGCGCCCGCGGCCGGCATGCCCACGCCAACGCCG
CCGTCGTCCTCGTCGCTGGACTGCGGCACGGTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGTCACGGGCGGCACGAG
CGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCGCGGCGGACTCGCCGG
ACAACTGGCGGTCCGTGTGCCGCTGCATGGCCGGGCTCGTCCGGCGGTACTGGTCCAACGCGTCCGCCATCGCGCTGCTG
CCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGGTCACCTACTGCACAAGGTAGACGCAAAATGCTTC---
-AGTTCGTTCGTTCCTTTTTGGTCGCCACTCACTCACAAGCAGATGACAAATTTTCTTTGATTTGAGGCTAAAAGATTAG
TAATTCCCTTGCAGCATCCCTTGA--------------------------------------------------------
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>chr4B_1_TraesCS4B01G348700
GACGGTGCAGAGATGGCAAATCCGAGCACTACTGCTCGTTGGATATCATCTACATTTCACCAGATTCTGCCACATATACA
ATCTAGAAGACTCCATGGTTGAATTAAGCATAATGCACAAACCTCAAAACACAAGCACTTCTTCTTTGTTCTAGAATCTT
CCGTATAATAATTGCCCAATTTTTTAAATGAATTGCCATTATTTGTTTTTACTTTATGCTTTACATGCACAATCTCATGA
ATTCTAACATTTTTATAGAACTAATTGATTTTGAATGAGATGAACTATAACAACTAAACGAACATCTACATCATAAATAT
ATGACTCAAAGATTACATATGCTATAATGTGGTATTTATTCATAATTTGGTGTGCAATGCACGTGTATCTTACTAGTATA
CAATGTAAAAGAATGTCTCTGTATATTTTTAAGGAAAATCATACCATTCAAAAAATGTTCAACATTTACTACAAAAATCT
TCAAGCATGTATTTGAAAAAAGAAATGGTTGACTAGGCTGTGCAAGGCTGTTTCCAGGGACATGGTGTTAGAGACAGATG
TGTTCCCCCGTGGGGATCCCTTCCGTCGAACTAGGTGATGCCACCTCTCTCTGCAGGCTTCTATTCGTAAAAAAGTGCCA
GTAAGCGTAGCATTGTTCTTGAAAACAAAAGTTCATTATGTATTTTTTTTTCAAATATATTATGTACACTG-----AAAA
ATACAGTGTGTATTGAAAAAAGGCAACATGTATTTGAAAAAAGAAGAACAAATTACGACTTGCATACCAGTATGCTCTTA
C-------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGCATGTCTAT
ATGTTTGGAAGACGTTTCTAATTGGTGTCCCCTGAAGTGGTTAGCTCATCCTGCGCTCGTGGACATGTACGTAACCACGA
TGACGTACGCATGCGACGCACACGAAACAAGCACCGCAAAAACCTCCACCTCCATCTACACTTCAGCCAGTCACGCCACA
CTG------------ACCGACCGATCGATCCAGCG-----ACGAGGGACATGGCGGCCGTGGGGTGGTTTCTAGCCGCCG
GAGCCATCGTCATGGCCACCCTGCTGTCAGGCTCCGCCCTGCTGACGGCGCCCGCGGCCGGCATGCCCACGCCAACGCCG
CCGTCGTCCTCGTCGCTGGACTGCGGCACGGTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGTCACGGGCGGCACGAG
CGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCGCGGCGGACTCGCCGG
ACAACTGGCGGTCCGTGTGCCGCTGCATGGCCGGGCTCGTCCGGCGGTACTGGTCCAACGCGTCCGCCATCGCGCTGCTG
CCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGGTCACCTACTGCACAAGGTAGACGCAAAATGCTTC---
-AGTTCGTTCGTTCCTTTTTGGTCGCCACTCACTCACAAGCAGATGACAAATTTTCTTTGATTTGAGGCTAAAAGATTAG
TAATTCCCTTGCAGCATCCCTTGACAGTTGACGTGCGCTCAGCCTCG-CAAGGCAACCGACGATTTCAGGGGCATGCAGC
TTGCTTCAGTTTGGAGTTCTCAGTTTTGTTCTTCATCAATCATGTTAGTTTCATGGAACTGTCGAAAACTGGATCACGTA
GCTCAGTCAGTTTCTGAAATTTAGAAATAATACTTCTGAAATGTACTGCTCCTTCCGTACATTTAGTGTAAAAAACGCTC
TTATATTATGGAACGGAGGGAGTAGATTTCTTGGTTGACGATACTTGACCCCGCCGTCCACGTGTGGTGACTTGGGGACG
ACTAGGGTTTCCCTCCGCCGCCGTGTGGTCGCTGTCCATGGCCGCTGACCTGCTGTTGTTGCTATTGGGAAACATGGTAG
AAAACAAAAAGTTTCGGGCCTACACACACCCAAGATCAATATAAAAATGAATAACGGGTTGGGATCATGATCGTTACCGT
CGCCGAGTTGTAGCGGAAGATGGACGTGTCGATGTAGATCGTACTTGGAGTCCCTTGAACCGTCGAGGAACAATTCCTCG
AACCGCCCACACTAGTAAAAACAGGGCATTTGTCCCGGTTGGTGAGGCCCTTTTGTCCCGGTTCATGAACCGGGACTAAA
GGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTAACGCGAAGCGGGACAGATGGGCCTCCACGTGGCCACTGCG
AGCAGCCCAGGCAAGGAGATCTTTGGTTCCGGTTGGTGACATGAATCGAGACCAAAAGGCTTCCACGTGTCAGCAGCTGG
CTGGAGCTGAGGTTTTTCTTTTCTTTTTAAATAAAAAGTGGCTGGTTTAGGGGTTTTGGGGGTTAATTTTAGGTTGTTAT
TAGCTAGCTAATAGAGAGAAGTGTCCTCTCTTATATCTTCGTTCTTGGTTTACCAACGCTACTGCTATGTTCATTTCACC
CGCTGATATATAATAACTCATGCATGCTCGCATCATATATCATCATATATAATAACAAGTCCTAC
>chr4D_690
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-------------------------------------------------TTCAAATATATTACGTATGCACACGGAAAAA
GTACAGCGTGTATTGAAAAAAGGCAACATGTATTTGAAGAA--AAGAACAAATTACGACTTACATACCAGTATGCTCTAC
ATACGCGAACCAATCTGTAGTTGGATGATTAGAGGGACAGTGGTATCCCTAGCCTACCAGGGTTCAAGTCCTGGTGCTCG
CATTATTCCTGAATTTATTTCAGGATTTCCGGCGATGCGCTTTCAATCAGAGGAGATGTTCCCGTCAACGACGAGGCGCC
TACGATGACTTCGTAAATCTCAAGATGACATGCCGACTCAGTCTCTCAAATGTGCTCATAGGGATAGGATGTGCATGTAT
GCGTTCATAGGGTGAATGTATGCGCGTATGTATGAGCGCTTACGTCTATACTGTGTTAAAAAAAAAGTATGCATGTCTAT
ATGTTTGGAAGACGTTTCTAATTGGTGCCCCCTGAAGTGGTTAGCTCATCCTGCCATCGTGGACATGTACGTAACCAAGA
TGACGTACGCATGCGACGCGCACGAAACAAACACCGCAAAAACCTCCACCTCCATCTACTCTGAGGA-AGTCACGCCACA
AT-CCCCAAGGCGACACTGATCAATCGATTCAGCGCCTAGACTAGGGCCATGGCGGCCGCGGGGTGGTTTCTAGCCGCCG
GAGCCATCGTCACGGCCACCCTGCTGTCAGGCTGCGCCCTGG---CGGCGCCCGCGGCTGGCACGCCCA------CGCCG
CCGTCGTCCTCCTCGCTGGACTGTGACACGGTGACGTCGCTGCTGACGGGCTGCGCGACTTTCGTCACGCGCGGCCAGAG
CGTGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTAGCGGCGGACTCGCCGG
ACAACTGGCGCTCCGTGTGCCGCTGCATGGCTGGGCTCGTCCGGCGGTACTGGTCCAACGCGTCCGCCATCGCGCTGCTG
CCGGGGCTCTGCGGCGTCTCGCCGGTGGCCACCGCTCACGCGGTCACCTACTGCAACAGGTACAAGGAAAATGCTTC---
-AGTTCGTTCG----TTTTTGGTCGCCACTCACTCACAAGCAGATGAGAAATTTTCTTTGATTTGAGGCTAAAAGATTAG
TAATTCCCTTGCAGCATCCCTTGACAGTTGACGTGCGCTCAGCCTCGGCAAGGCAACCGACAGTTTCAAGGGCATGCAAC
TTGCTTCAGTTTGGAGTTCTCAATTTTGTTCTTCATCAATCCTGTTAGTTTCATGGAACTGTGGAAAGCTGGATCACGTA
GCTCAGTCAGTTTCTGAAATTTAGAAATAATACTTCTGAAATGTACTGCTCCGTCCGTACATTTAGTGTAAAAAACGCTC
TTATATTATGGGACGGAGGGAGTAGATTTCTTGGTTGACGATACCTGACCCCGCCGTCCACGTGTGGTGACTTGGGGGCG
ATTAAGGTTTCCCTCCGCCGCCGTGTGGTCGCTGTCCATGGCCGCTGACCCGCTGTTGTTGCTGTTGGGAAACATAGTAG
AAAACAAAAAGTTTCACGCCTACGCACACCCAAGACCAATATAAAGATGAATAACGGGTTGGGATCATGATTGTTACCGT
CACCGAGTTGCAGCGGAAGATGAACGTGTCGGTGTAGATCGTACTTGGAGTCCCTCGAACCGTCGAGGAACGATTCCTCG
AACCGCACAC----------------------------------------------------------------------
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>chr5A_793
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-----------------------------------------------------------------------------TTA
C-------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGCATGTCTAT
ATGTTTGGAAGACGTTTCTAATTGGTGTCCCCTGAAGTGGTTAGCTCATCCTGCCCTCGTGGACATGTACGTAACCACGA
TGACGTACGCATGCGACCCACACGAAACAAGCACCGCAAGAACCTCCACCTCCATCTACTCTTCAGTCAGCCACGCCACA
GTCCCCCAAGGCGACACTGATCGATCGATCCAGCG-----ACTAGGGCCATGGCGGCCGCGGGGTGGTTTCTAGCCGCCG
GAGCCATCGTCATGGCCACCCTGCTGTCAGGCTGCGCCCTG---ACGGCCCCCGCGGCCGGCATGCCCACGCCCACGCCG
CCGTCGTCCTCCTCGCTGGATTGCGGCACGCTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGTCACGCGCGGCACGAG
CGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCGCGGCGGACTCGCCGG
ACAACTGGCGGTCGGTGTGCCGCTGCATGGCGGGGCTCGTCAGGCGGTACTGGTCCAACGCGTCCGCCATCGCGCTGCTG
CCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGTTCACCTACTGCACAAGGTAGACGGAAAATGCTAGCTT
GAGTTCGTTCG----TTTTTGGTCACCACTCACTCAGGAGCAGATGACAATCGTTCTTTTCTTTGAGGCTAATGGTAAGC
TAATTCCCTTGCAGCATCCCCTGACGGTT--------CTCAGCCTCGGCAAGGCGACCGACAATTTTAAGAGCATGCAGC
TTGTTTCAGTTTGAAGTTATCAATTTTGTTCTT-----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---SS-SS---------
S-----S-------------------------------S--SS------------------S------------------
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------------------------------------------------------S-------------------------
-----------------------------------------------------------S------S-------------
S-S--------------S--S---------------------S----S-----------S--------------------
---------------------------------S-------SSS-----------------------------S------
-----------S---------------------------------------------------------S----------
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-------------------------------S------------------------------------------------
------------------------------------------------------------------S-------------
-----------SSSS-----------------------------------------------------------------
-------------------------------------------------------------S------S-----------
----------------------S------------------S--------------------S----S------------
----------------------------------------------------S---------------------------
-----------S--------------------------------S--------------------------------S--
-S--S---------------------------------------------S------------S-----------S----
---------------SS------S-----------S---------S-------------------------S--------
-S--------S-----------S--------S-----------------------S---------------S--------
------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_544
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--------------------------------------------AGGCTGTTTCCAGGGACATG----------------
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>reverse_2565
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----GCCCAGGCAAGGAGATCTTT--------------------------------------------------------
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