>input_sequence_77178
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---------------------------------------------------------ATGAGGCCATCTACCGCTGCTCA
CATTCTCACGGCCGCCGTCCTCTTGCTGGGCG---GCGCGGGCGCGACCCCGGAGACGACGTGCAGCGCGGCGGCGGGCG
CCGACAGGCGCGTGGACTACCACTTCTGCGTGTCAAGGCTGAGCCAGCACCACGACAGCCCCGACGCCGACACGTGGGGC
CTGGCCAAGGTGGCCGCCGACGTAGGCGTCCTCCTCGCCGGCAACGGCGTCTACGACATTAAGCACATGCTCGCCAAGAA
AG---------CGGCTGGGGGCAAGGTGCGTGCGCCGCTGGAGCGGTGCGAGGCGCTCTACGGCAGGATGGGGTCCGCGT
TCGCAGAGGCCTACGACGGGATCGACAGGCGCGACTACGCGGCGGGGAAAGACAAGGCGCGCGAGGCCGCGCCTCTCATG
CGCCGGTGCGGCGAGGCCTTTGCCAGGGCCGGCGTCG---TCCCGTCGCCGCTGGCGAGGCAGAGCGCGGACGCGGTGCA
GATGGCCATCGTCTGCACAGCCATCACCGGCCTCATCCAGTGA-------------------------------------
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>chr2D_1_TraesCS2D01G536100
ATGGTTTAATCGACAGCCCAAGCAGTTTCACAACTACACCGCACGGTTGACTACAACACAGGCAGTACATGCCATCTAGC
TTCTTTTTCTAACTAGAAAAGAGGAGAGGAACTAGTTAGCGGGTACTCCTTCGGGAGCCCCCACAAGGATCACTTTGGCA
GCGCGCAAGTGACGCGCTGTTAGGCGGCGTCACGTGTCGCGCTGCTACTTGTGAACTGCGTTGGGATTTCCCCGAAGAAA
AGAGGATGATGCAATACACTAGAGATAAATATTTCCCTCAATTAAGAACCAAAGTTATCAATCTAGTAGGAGAACACAGC
AACAACTCGTTAGTAGGGAGTTGACGGGACGGGAGGCGAAGGAGCACGAGGGAGCTTCGCGGGAGAAGCACATCGGCGGA
AAAAGAGCTCAACGAGGATCCCGGATCTGGTCGAGCTTGACGCAGGGACGACCAGAGGAGAGAGATCAGGGCGGTGCCAT
TGCGAGTTCGCCCGCGGTAAGCGCGTTCGCGAGAGCCATCCCGGTACACATCTATTTTTGCCTCGCTAAGCTCCCTTTGT
TTAATGGTTTAGCAACTAAATATTTTATGGATTGGTGAGCTTGCCTAACTTATTTTACCTAGGTTCGTGTGCTTAGTATT
GTTTCTTATTTCTTTGAACACAGTACGGGCGCAAGAACTCATATATACGAGTATTTTCTTTTATTGGCATCAAACTCATC
TCTGTTCTCTTAATTACCTTGTCACATCAATTTTTTTTGCCATCATGACTGAAAACGGATCAACTAGCTATGCATGTGTC
TGTAGGGGACCACACGTAACAAAGCAGGCAAGCCTGAGCGGCTGAGCACGCTGTGCACCCGATAAACAAGATGCTGCAGG
CGGCCGACAAGCGCACTACAATCAGTCGGCTGAATCGTAC----CCTTTCCCAAAAGTATCACCAAACAGGGGCCTATAT
CACCGGCAGTAGCCCGTTCACTTCGATTTTGTGAAACAA-------------CAGCGATGAGGCCATCTACCGCTGCTCA
CATTCTCACGGCCGCCGTCCTCTTGCTGGGCG---GCGCGGGCGCGACCCCGGAGACGACGTGCAGCGCGGCGGCGGGCG
CCGACAGGCGCGTGGACTACCACTTCTGCGTGTCAAGGCTGAGCCAGCACCACGACAGCCCCGACGCCGACACGTGGGGC
CTGGCCAAGGTGGCCGCCGACGTAGGCGTCCTCCTCGCCGGCAACGGCGTCTACGACATTAAGCACATGCTCGCCAAGAA
AG---------CGGCTGGGGGCAAGGTGCGTGCGCCGCTGGAGCGGTGCGAGGCGCTCTACGGCAGGATGGGGTCCGCGT
TCGCAGAGGCCTACGACGGGATCGACAGGCGCGACTACGCGGCGGGGAAAGACAAGGCGCGCGAGGCCGCGCCTCTCATG
CGCCGGTGCGGCGAGGCCTTTGCCAGGGCCGGCGTCG---TCCCGTCGCCGCTGGCGAGGCAGAGCGCGGACGCGGTGCA
GATGGCCATCGTCTGCACAGCCATCACCGGCCTCATCCAGTGAACGAGCGAGCGGTGTTTCCTGTATAATGC--TGCTTG
CTCGGTCGACCGTCGTGTCATGCA--CACATGCACCTACACCTACGCTTGCATGTGCGTCAGGCTGATCGTTGATACTAA
AACGTTCTTCAGTGATGTAGCGATCGTTGAT----------AATAAAATGCTTTTGTATCTCTTTCATCTAATTAATGGA
GTCGTTTGTTTCATGAAATCTCAACTTAAAGACAATTCGGGCGCCAGATGCCACGTACTAGTAGGAGTTATGGATAGAGA
GGGGAACCGGGTGCGTGAAGGGTGTTGGCTGCTCACAACGGACTTACCATATACTCCCTCCGTCCCC-AAAAAACTTGGT
GCTCAATTGTATATATCTAGTACAGTACAATATTAGTATTATACATATATATGATACTAGTGTATGATACTATCTTCACA
AGGCATAATATTATAGATTGGTATCATGGTGACCTTATTATTGTCATGCATGATACTCCCTCTGTCCAAAAATACTTATG
GGTGAAATGTATAAAAATAAATATATCTAAACTAAAATACGTCTAGATACACCAATCTCTCCGACAAGTATAACATCATT
TAATATGATACAATGTCAAAGAAATAGGATGATACTAGTATAGTGCTAGATATATACCATTTAATATGTATCTGGCGGCC
TGTCTCTC-AAGTTGCTTATAGAAATATGATGTGTGTGTGCATGT-GTTCATAGGGTTAGAGTATGTACCTAAGCGTCTA
TGTCTATCTACACTCTGGCAAGGACAACCACACGTAAAATGCAAGGAAGACACATTACTGTGGCATGGCACGTCCGGATG
CAGAAAATATCACGATGCATGACTAATCACAGGAAAAGTGCTGTAGAATAACTAGACCTAATGACCTGCCTAGTGGACAT
TTCACTAGGGTACCCATCCATCAATCAAGGAAGAAAGAATGGTAGGATAGACATTACGGCAAGCAAAGGAAAGCCCTTTT
CTTGCCAGCGTCAATATCCG
>chr2A_792
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-----------------------------------------------------------------------GCATGTGTC
TGTATGGGACCACACGTAACAAAGCAGGCAAAC--------CTGAGCACGCTGTGCGT-CGAGAAACAAGATGCCGCAGG
CGCCCGACAAGCGCACTACAATCAGTCGGCTGAATCGTACGTACCCTTTGCCAAAAGTATCACCAAACAGGGGCCTATAT
CACCGGCAGTAGCCCGTTCACTTCGAATTTGTGAAACAAAGCTAAGCAGCAACAGCGATGAGGCCATCTACCGCTGCTCA
CATTCTCACGGCCGCCGTCCTCTTGCTCGGCG---GCGTGGGCGCGACAACGGAGACGACGTGCAGGGCGGCCGCGGGCG
CCGACAGGCGCGTGGACTACCACTTCTGCGTGTCCAGGCTGAGCCAGCACCACGACAGCCTCGACGCGGACACGTGGGGC
CTGGCCAAGGTGGCCGCCGACGTAGGCGTCCTCCTCGCCGGCAACGGCGTCTACGACATCAAGCACATGCTCGCCAAGAA
AG---------CGGCTGGGGGCAAGGTTCGTGCGCCGCTGGAGCGGTGCGAGGCGCTCTACGGCAGGATGGGGTCCGCGT
TCGCAGAGGCCTACGACGGGATCGACAGGCGCGACTACGCGGCGGGGAAAGACAAGGCACGCGAGGCCGCGCCTCTCATG
CGCCGGTGCGGCGAGGCCTTTGCCCGGGCCGGCGTCG---TCCCGTCGCCGCTGGCGAGGCAGAGCGCGGACGCGGTGCA
GATGGCCATCCTCTGCACAGCCATCACCGGCCTCATCAAGTGAACGAGCGAGCGGTGTTGCCTGTAATGCTGCTTGCTCG
ATCGGCCGACCGTCGTGTCATGCATGCACATGCACCTACACCTACGCTTGCATGTGCGTCAGGCTGATGGTTGATACTAA
AACGTTCTACAGTGATGTAGCGATCATTCACTCCAGAAGAGAATAAAATGCTTTTGTATCTCTTTGATCTAATTAATGGA
GTCGCTTGTTTCATGAAATCTCAACTGAAAGACAATTCGGGCGCCAGCTGCCACGTACTGGTAGGTGTTATGGATAGAGA
GGGGAACCGGCTGTGTGTAGGGTGTTGGCTGCTCACAACGGACTTACCATATACTCCCTCCGTCCTAAAAAAAACTTGTC
GCTCAATTGTATATATCTAGC-----ACTATACTAGTATCATACATAT----GATACTAGTGTATAATACTATCTTCACA
AGGCATAATATTCTAGATTGGTATCATGGTGACCTTATTATTGTCATGCATGATACTTCCTCCGTCAAAAAATACTTATG
GGCGGAATG-ATAAAAATAAATGTATCTAAACTAAAATACGTATAGAAATAGGAT-------------------------
------------ATGTCAAAGAAATAGGATGATACTAGTATAGTGCTAGATATATAACATTTAATATGTATCTGGCGGTC
TGTCTCTCAAAGTTGCTTATACAAATATGATGTGTGTGTGCATGGCGTTCATAGGGTTAGAGTATGTATCTAAGCGTCTA
TGTCTATCTACACTCTGGCGAGGACAACCACATGTAAAATGCAAGGAAGACACATTACTGTGGCATGGCACGTCCGGATG
CAGAAAAT-----------------ATCACAGGAAAAGTGCTGTAGAATAACTAGACCTAATGACCTGCCTAGTGGACGT
TTCACTAGGGTACCCATCCATCAATGAAGGAAGAAAGAATGGTAGGATAGACATTACGGCAAGCAAAGGAAAGCCCTTTT
CTTGCCAGCGTCAATATCCG
>chr2D_1032
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--------CGGCTGCCGTCCTCGCCGCCGTGGCCTGCGTCGGCGCGACCCCGGAGACGACGTGCAGGGCGGCGGCGGGCG
CGGACAGGCGCGTGGACTACCGCTTCTGCGTGTCCAGGCTGAGCCAGCACCACGACAGCCCCGACGCCGACACGTGGGGC
CTAGCCAAGGTGGCCGCCGACGTCGGCGTGCTCATGGCTAGCAACGGCGTCTACGACATCAAGGCCATGCTCGCCGGCAA
AAAGGAGCAGCCAGCGGCGGCA------CGCGGGCCGCTGGAGCAGTGCGAGGCGCTGTACGACAGGATGGGCTCCGCGT
TCGCCGAGGCGTACGACGGCATCGACAGGCGCGACTACGCGACGGGCAAGGAGAAGGCGGGCGAGGCCGCGTCCCTCGCG
CGCCGCTGCGGCGACGCCTTCGCCCGGGCCGGCGTCGCCGTCCCGTCGAGGCTGGCGAAGCAGGGCGCCGACTCGGTGCA
GATGGCCATCGTCTGCACCGCCGTTACCAACCTCATCAAGTGA-------------------------------------
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>chr2A_1032
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--------CGGCTGCCGTCCTCGCCGCCGTGGTCTGCGCCGGCGCGACCCCGGAGACGACGTGCAGGGCGGCGGCGGGCG
CCGACAGGCGCGTGGACTACCGCTTCTGCGTGTCCAGGCTGAGCCAGCACCACGACAGCCCCGACGCCGACACGTGGGGC
CTGGCCAAGGTGGCCGCCGACGTGGGCGTGCTCATGGCCAGCAACGGCGTCTACGACATCAAGGCCATGCTCGCCGGCAA
GGAGGAGCGGCCGGCGGGCGCCAGGGCGCGCGGGCCGCTGGAGCAGTGCGAGGCGCTGTACGACAGGATGGGCGCCGCGT
TCGCCGAGGCGTACGACGGCATCGACCGGCGCGACTACGCGGCGGGCAAGGAGAAGGCCGGCGAGGCCGCGTCCCTCGCG
CGCCGCTGCGCCCACGCCTTCGCCCGCGCCGGCGTCGCCGTGCCGCCGCGGCTGGCGAAGCAGGGCGCCGACTCGGTGCA
GATGGCCATCGTCTGCACCGCCATTACCAACCTCGTCAAGTGA-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----S--------------------------S-SSSSSSSS---------------SSS---S-----------S-----
--S----------------------------------------------S------------------------------
--------------------------S-----------------------------------------------------
---------------------------S--------------------------------------S-------------
----------------------------------S---------------------------------------------
-----------------------------------------------------------S--------------------
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------------------------S-------------------------------------------------------
-------------------------------------S---------------------S------SSSSSS------S-
S----S--------------------------------------------------------------S-----------
--------S----------------S--S-S----------------------------------S--------------
----S---------------------S--------------------S-----------S-----S--------------
----------S--S---S-----------------------------------------------SS-----------SS
--------------------SSSSSS--S---S------S--------SSSS-------------S--------------
------------S--------------------------------------------S----S---S-------------
--S-S----S------------S-------------------S----S-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------S---------------------S-
---------------------S----------------------S-----------------------S-----------
-------------------S------------S-----------------------------------------------
--------SSSSSSSSSSSSSSSSS-----------------------------------------------------S-
-------------------------S------------------------------------------------------
--------------------
>forward_429
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---------CAACGAGGATCCCGGATCTG---------------------------------------------------
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>reverse_1787
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--------------------------TAAAGACAATTCGGGCGCCA----------------------------------
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