>input_sequence_77172
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----------------------------------------------------------------ATGTCGATATCCTCGA
GCTCCAACAAGACGCTGCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGC
TTCAGCGTCACCGCCGTCTGTGTCTTCATAATCGCCCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCG
CAGGATCGTCTTCGTGGGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCG
CGCTGCCGTCGTTCTTGTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTCCGGACGGTCGTGGCGAAGGCAGCGGC
GGCGGCCGCGGGTGGGCGCAGTGCGCGGTGTGCCTCAGCCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTG
CATGCACCTGTTCCATGTAGGCTGCGTCGACACCTGGTTGCACTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTAG
AGCCCCCTTCGAAAGACCAGGTGCCTCCTGTGTGA---------------------------------------------
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>chr2D_1_TraesCS2D01G162400
ATCATTAACGCGGGTGGAAGTTTTCATCAATGATGATAAAGAGATTAAGTTTGTAAATGTAGGAGGC--AGCTAGCAGAA
TAAGTTTAGCCTTGAACTATCTTCTTTTGTGAGAATTCATGCTACGGCTATGGTCTTGAAGCAGACTTTCGCCTCGCTTT
GTACATAAAGCAAATCACCATATCCCAACATCATGTTCATGTGTTAGATTTTTTTTAAGGATCTACAGGGGCAACAACAC
AGGCATGCCCAAACGAGAAAAC-AAAAAGAAAGAAAAGGAATACGAGGCTCCATGAAGCCGACTAGCTTCCGG-------
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-AACTGTAGTATGCCTAATGATTAATAAGGCCCTCTATTTTCCTGCAAAAAATGAATTCCCTCTGGGCATGTTGTCAGAA
AAAGAAAACAACGGAAACTT----CAGGATATATCCATAACTGCTGCCTATTCCATTGACCTACTACACAAATGAACAAT
GATTGATTAACTTAACTAATCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGTGGCAAATGTCACCATTTGGTTATG
TCAGTGGTTGAGAAACCTAGCTAGTTGTAATTGTTAACCTACAAGACGACTGTCTAACAGGATGAAAGGGCCATCCGAAC
AATTGCCATATATGGTTTGGATAAGAACAATGGCCATAAATAATGGAAAGCATGACATGAACTTAGATCACGAATGATTT
TGATCTATTTGGATATTCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGTGACTAGTTATGTG
ACTAATCTAACATTAGTTGCATAACTGCCGTCCTTGAAACGCTCAAAAAACTCGGAATATATTTGACTTCTAGCGTTGCA
TATA---TAGCGGCCAATTCCAGGCTCAGCCTCCAAGAATATAACATACCAGCAATACAGCTCAAAGC---TTGCAGACG
AGCTAAGCTACCTGA---TAGGTGACACGGCTAGAAACTAGCTAGAGCAGTTCGTCGACCGGCCATGTCGATATCCTCGA
GCTCCAACAAGACGCTGCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGC
TTCAGCGTCACCGCCGTCTGTGTCTTCATAATCGCCCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCG
CAGGATCGTCTTCGTGGGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCG
CGCTGCCGTCGTTCTTGTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTCCGGACGGTCGTGGCGAAGGCAGCGGC
GGCGGCCGCGGGTGGGCGCAGTGCGCGGTGTGCCTCAGCCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTG
CATGCACCTGTTCCATGTAGGCTGCGTCGACACCTGGTTGCACTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTAG
AGCCCCCTTCGAAAGACCAGGTGCCTCCTGTGTGATCGATGCGAGATTTGTGCAGAGTTTTCTGTGCTATGTACTGTAGC
-----ATATTTTTGTACATATCAGATGTAGAAATTACTGTACTACGAGTGCGTACCAAGAATTCTGCACCAAACTAGTTT
CACC--TGTCATGTTCTCTACCCTTTCTCTGGATGTCGTTG---ATGCTTGAATGTAGATTGGGGAGGATCAATTGTGAA
TAGAAGGATGAAATGGTTGATCCAGTCTGATTGGTTCTGACATAAAAATC--------TCTTATTGGTTCTTGACATTGA
CTTGTAATAGAGAG-TCATCTTCATAGTCAACGCGCTTTATTTTCTTCTAATCTTTCTTTTTTGACAAGAAATCATCTCC
GATGCCCATACTATTGGTCGACATCACAAGAGTTGGTGTTGACCACGAATGCTATATGCTGCCTCTTGCAGCATATAAGT
GGCGGATAACCCATGGGCGATTGCGATTGGGATGGCGGCCTAGTAGGCGACTTTTTT--------TTGCGGGAATACATA
AACGCATCTGATTGGTTCTTGAGATTGACTTGTAATAGAGAAATTGTCTCCATAGTCAACGTGCTTTCTTTGGGTTTTCG
AAAAAATCCAGCCCCGGCGAGGTCAACCAACAT-----------------------------------------------
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---------------------------------------------------GGAGTTGTTGTTAGGAGCACGAGAGTTGC
CTTAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTGACCTCAATGATCCGCAAAATATCTCGAACTAGAAGACAAAGAGTTGGACG
GCGTTTTTCTTGCGAAGGCTGATGTGGATCATCTGAAGGA
>chr2B_1
ATCATTAACGCGGGTGGAAGTTTTCATCAATGATGATAAACAGATTAAGTTTGTAAATGTGGGAGGC--AGCTAGCAGAA
TAAGTTTAGCCTTGAACTATCTTCTTTTGTGAGAATTCATGCTACGGCCATGGTCTTGAAGCAGACTT-CGCCTCACTTT
GTACATAAAGCAAATCAGCATATCCCGACATCATGTTCATGTGTTAGATTTTTTTTAAAAATCTACAGGGGCAACAACAC
ATGCATGCCCAAACGAGAAAAC-AAAAAG-AAGAAAAGGAATACAATGCTCCATGAAGCCGACTACTCGCGGCGAAGAGG
CTAAGAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCTGCTGCCCATGTGA
CAAATTTAATATGCCTAACGATTAATAAGGCCCTCTA-TTTCCTGCAAAAAATGTATTCCCTCTGGGCATGTTATCAGAA
AAAGAAAACAATGGAAAAACACTCCAGGATATATCCATAACTGCTACCTATTCCATTGACCTACTACACAAATGAACAAT
GATTGATTAACTTAACTAACCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGCGGCAAATGTCACCA-TTGGTTATG
TCAGTGGTTGAGAAACCTAGCAAGTTGTAATTGTTAACCTACGAGACGACTGTCTACCAGGATGAAAGGGCCATCCGAAC
AATTGCCATATATGGTCTGGATAAGAACAATGGCCATAAATAATGGAAAGCATGACATGAACTTAGATCACGAATGATTT
TGATCTATTTGTATATTCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGTGACTAGTTATGTG
ACTAATCTAACATTAGTTGCATAACTGCCATCCTTGAAACGCTCAAAAAACTCGGAATATATTTTA-TTCTAGCGTTGCA
TATATACTATCGGCCAATTCCAGGCTCAGCCTCCAAGAATATAAGATACCAGCAATATAGCTCAAAGCAGCTTGCAGACG
AGCTAAGCTACCTTA---TAGGTGACACGGCTAGAAACTAGCTAGAGCAGCTCGTCGACCGGCCATGTCGATATCCTCGA
GCTCCAACAAGACGCTGCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGC
TTCAGCGTCACCGCCGTCTGCGTCTTCATAATCGCGCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCG
CAGGATCGTCTTCGTGGGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCG
CGCTGCCGTCGTTCTTGTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTTCGGACGGTCGCGGCGAAGGCAGCGGC
GGTGGCCGCGGGTGGGCGCAGTGCGCGGTGTGCCTCAGTCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTG
CATGCACCTGTTCCATGTAGGCTGCGTCGACACCTGGTTGCATTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTGG
AGCCCCCTTCGAAAGACCAGGTGCCTCCTGTGTGATCAATGCGAGATTTGGGCAGAGGTTTATGTGCTATGTAGCATCAT
ACAGTATATTTTTGTACATATCAGATGTAGAAATTACTGTACTACGAGTGCGTACCAAGAATTCTGCTCCAAACTAGTTT
CATGCGTGTTCTGTTCTCTGCCCTTTCTCCGGATGTCTTTGTTCATGCTTGAATGTGGATTGGGGAGGATCAATTGTGAA
TAGAAGGATGAAATGGTTGATCCAGTCTGATTGGTCCTGACATAAAAGTCCCTTATTGCCTTATTGGTTCTTGAGATTGA
CTTGTAATAGAGAAATCATCTTCATAGTCAACATGCTTTCGTTTATTCTAATCCTTTTTTTTTTGCAAGAAATCCTGATT
GAGGACCACACTATTGGTCGATCTCACCGGGGTTGGTGTTGACCGCAAATGCTACATGCCACCCGTGGTAGCATATAAGT
GGCAGATAACCCATAGGCGGTTGGGATTGGGATTGCGGCTTAGTTGGCGGTTTTTTTCTTTTTTTTTGCAAAGATACATA
AACACATTTGATTGGTTCTTGATATTGA----------------------------------------------------
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>chr2A_1
ATCATTAACGCGGGTGGAAGTTTTCATCAATGATGATAAAGAGATTAAGTTTGTAAATGTAGGAGGCAGAGCTAGCAGAA
TAAGTTTAGCCTTGAACTATCATCTTTTGTGAGAATTCATGCTACGGCCATGGTCTTGAAGCAGACTTTCGCCTCGCTTT
GTACATAAAGCAAATCATCATATCCCAACATCATGTTCATGTGTTAGATTTTTTAAA--GATCTACAGGGGCAACAACAC
AGGCATGCCCAAATGAGAAAACAAAAAAAAAAGAAAAAGAATACAAGGCTCCACGAAGCCGACTACTCGCGGCGAAGAGG
CTAAGAAAGTGGCGCGCTTGCTTCCG------------------------------------------------------
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--------------------------------------------------------------GTCCCGCTGCTCATGTGA
CAACTGCAATATGCCTAATGCTTGATAA-GCCCTCTATTTTCCTGCAAAAAATGAATTCCCTCTGGGCATGTTGTCAGAA
AAAGAAAACAACGGAAAAACACTCCAGGATATATCCATAACTGCTACCTATTCCATTGACCTACTGCACAAATGAA----
----GATTAACTAAACTAACCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGCGGCAAATGTCACCATTTGGTTATG
TCAGTGGTTGAGAAACCTAGCTAGTTGTAATTGTTAACCTACGAGACGACTGTCTAACAGGATGAAAGGGCCATCCGAAC
AATTGCCATATATGGTTTGGATAAGAACAATGGCCATAAACAATGGAAAGCATGACATGAACCTAGATCACGAACGATTT
TGATCTATTTGGATATTCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGCGACTAGTTATGTG
ACTAATCTAAAATTAGTTGCATAACTGCCGTCCTTGAAACGCTCAAAAAACTCGGAATATATTTTACTTCTAGCGTTGCG
TATATACTAGCGACCAATTCCCTGCTCAGCCTCCAAAAATATAAGATACCAGCAATATAGCTCAAAGC---TTGCAGACG
AGCTAAGCTACCTTATAGTAGGTGACACGGCTAGAAACTAGCTAGAGCAGTTCGTCGACCGGCCATGTCGATATCCTCTA
GCTCCAACAAGACGCTGCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGC
TTCAGCGTCACCGCCGTCTGCGTCTTCATAATCGCGCTGTTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCCGGCGGCCG
CAGGATCGTCTTCGTGGGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGACGGTGGGCTGAGCCCCACGGCCGTGGCCG
GGCTGCCGTCGTTCTTGTACCACAGAGGCTTGGCCGTCCGCGGCAACGGCGATTCGGACGGTCGTGGCGAAGGCAGCGGC
GGTGGCCGCGGGTGGGCGCAGTGCGCGGTGTGCCTCAGTCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTG
CATGCACCTGTTCCATGTAGGCTGCGTCGACACCTGGTTGCACTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTAG
AGCCCCCTTCGAAAGACCAGGTGCCTCCTGTGTGATTACTGCGAGATTTGCACAGAGTTTTCTGTGCTATGTAGCATG--
------TATTTTTGTACACATCAGATGTAGAAATTGCTGTGCTGCGAGTGCGTACCAAGAATTCTGCACCAAACTAGTTT
CACC--TGTTATGTTCTCTACTTTTTCTCTGGATGTCGTTC---ATGCTTGAATGTAGTTTGGGGA--------------
--------TGAAATGGTTGATCCAGACTGATTGGCCCTGACATAAAAGTC--------CCTTATTGGTTCTTGAAATTGA
CTTGTAATAGAGAAATCATCTTCATAGTCAACGTGCTTTCGTTTATTCTAATCCTTTT--TTTTGCAAGAAATCCCGATT
GAGGACAACACTATTGGTCTATCTCACCGGGGTTGGTGTTGACCGCAAATGCTACATGCCACCCGTGGCAGCATATAAGC
GGCGGATAACCCATAGGCGATTGGGATTGGGATTGCGGCTTAGTTGGCGGTGTTTTC-----TTTTTGCGAAGATACATA
AACACATTTGACTGGTTCTTGAGATTGACTTGTAATAGAGAAATCGTCTTCATAGTCAATGTGCTTTCTTTGGTTTTTCG
AAAAAATCCCGGCTGAGGCCTACCGTGTTGGTTGACCACTCCGGGGCTGGCACTGATCCAATAGGGATTAAACGGGCCTC
GTCTTGTAGGAATTTGGAATTTTGCATTTTTTATTAGGATCACGTCGAAGACTTAGTAGAACTCACCCAATAATATTGTG
TGCACACAACTACATTACGAGATCTTATCAATACAAAGAATGAAGAAATACCCTATAATAGTGTCTGTTGCCTGCCCACC
ATGATATTGCACATGATTCTTCGTGCAAATTTCAGAACACATAACCAGCCCTTGTAGCATGATGACTTGGGGCTTCCACG
ATCGACGTTGACCAAAGGAGGCATGAAGCCCTCCAACAAAGTTAGGACTTTTACCTTGGCCAAAAGCACCCTCCCGTTCC
CCTATCTCGAGAGGGAGCCTTGGCCCAGTCCAAAATATCCACACCCAAAATAGTGTGGAGTAGATCGCGAGGGGGAGGGG
GGTTGTACTCATGCCTAGGAAAGCACGGTTTTAGACTCCGCTTGCGATTTTGTCACCGGATTCCCGATCTTGATCTCTCC
CGCTCGGCCTGACCAGGGGGATGGCTTTGTCCACCTGCCTAGCCTCTACGGGGAGTTGTTGTTAGGAGCACGAGAGTTG-
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>SNPs
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------------------------------------------------S-------------------------------
-----------------S----------------------------------------S---------------------
--------------------------------------------S--------------------SSSS-S-S-------
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--------S-----------------------------------------------------------------------
-----------------SSS-------------------------S----------------------------------
-------------------S-----------------------------------S------------------------
------------------------------------------S-------------------------------------
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----------------------------------------------------------------S---------------
--------------------------------------------S------------S----------------------
-------------S------------------------------------------------------------------
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--------------------S--------------S--------------------------------------------
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-----------------------------------------------------S--------------------------
--S-----------------------------------S-----------------------------------------
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-------------------------------------S------------S----------------------SSS-SSS
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---------S----------------------------------------------------------------------
-----------------------------------S-----------S----------S---------------S-----
-------------S-------------------S-----SS---S--------S--S------SS---------S-SSSS
--S-S---S------------SS----SS-S-------------S-S-------S----SS--SS-S-------------
--------------S--------S---------S-----S----S----SS-------------------SSS-------
---S---S------------------------------------S----S---------S-------------S------
---------S-S-SSS-SSSSSS-SSSSSSSS------------------------------------------------
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-------------------------------------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_307
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-----------------------------------------------GCTCCATGAAGCCGACTAGC-------------
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>reverse_2227
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------------------------------------------------------------------TGCAGCATATAAGT
GGCGGA--------------------------------------------------------------------------
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