>input_sequence_77169
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----------------------ATGTCCATGAGCGCCCCAGCCGAGCCGTCGTGGCTCCGCCGGGACCTGCTCCCGCACC
TCGGGCTCCCGGCGGACCTGCCGGTGCACTTCATCGCCGAGAAGGCCGTCACCGGCACCGACTTCGACCCGCTGCAGTGT
CGGTTCAGCCTCCCGCCCTACGGCGTGATA--------CACAGCCTGCGCCCCGTCCTCACCGCCGAAGAGCTCCAGGCT
GCCAACCTGCGGTACGAGGACGACAACGCGCAGGAGCAAAGGACGACTGGGGAGAGGAGGAAAGAGAGGAGGCACCGCGC
CGGCGGGCTGCCCGTGCTGGTGGTCGACCCCCACGCCGGATCCATTGAGCTGCGGCTGTCGCGCGGCGCCCACAGCACGA
CGCTCAAGGGGGCTGGGTATCTCGATTTCATCAACGAGTGCAGCTTCACCGTCCACGACGTCGTCCGGATCTGGGCCTTC
AACCCCCACGCATCTCCTTCAAACGTTGAGGAAAGCCCCCTCTATCTTGTCATCGCCAAGAAACCAACACCCCAGACTTG
A-------------------------------------------------------------------------------
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----------------------------------------------------------
>chr2B_1_TraesCS2B01G433000
ACTTCAACGGGGATCATTGGCTTCTCATGGGTAAGCTCATTGTGTACATGCCACACACGCCATAGCACCATGAGTACAAG
CATGCGTTGTGTGTCGTTCAGCTCCTGTAGCAGTATTAACAACCAGTCCGGCTGTTCATTTTTAAGAGATTCAACAGATG
GTAAATCCCAGACCCTTCGCATTGCGTCCCACAAGTTCTGAGCATGAGGGCATCGGATTAGTGCATGATGAGCCGTTTCT
TCCTCTTGCCCGCAGATCGTACAAATACCATCCAGCTCCATGTGTCGACGCTTCTTGTTCGCCCGAGTAGCCAGTGCCTC
CCGATCGTACAAAAGTTCCATATATTGTAATCAAACAATTTACTTAGAGAAAAATCCTAAGAGTTAGAATGCTCCGAAAT
TCTTTTGGCAATCCCTCGAGTCGAATCAATGAGGCCCGTACTGTGTACTAGTACCACAGGACATTCTGCATGAAGCAAAG
AGTTCTATTCGCGGTAAGGAAAAAGAAGAAGCCTCGCCTGTTTGGACAGAACCTAGATAAATGATTAGCCGGAGTCGGAC
CCTATGTTTTAAAAAAAACGAATCATTATATGGCGAACGTCATCCAGGGACATTTTGCTAGTGAACCCTTCCTGAACCGC
ACGATGTACATTCGATGGCCGGCATTTTTCGTGACAAAAAAGAAAACCTCAAAAGAAACTGCCATGGCAGTTTTGCAAAA
TGACCCCCCAGCTCACCCAATACAACAAAAATGCCACCCTGGGCGTTCGCAACTGTCACCCTAGTTGGCGAACGTTCGCT
AGGTGCCAC-----------------------------------------------------------------------
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---------------------------------------------------------------CATTAAACGCGTCCAGT
TCATAAGCCGCGTTCGTCGTCCTTCTCCACGACTTTGAGTCCAACCTAGACTCCGATCCCAGCAAGACTTGCGATTCGTC
TATAACCCAGCCACATAAACACAGATGAAT--------AGCCACGAGACTCCTTGCTGTTGTTGATTCCGACGTAACGAA
GTAGCGTTCGACGTCGCCCACCATGTCCATGAGCGCCCCAGCCGAGCCGTCGTGGCTCCGCCGGGACCTGCTCCCGCACC
TCGGGCTCCCGGCGGACCTGCCGGTGCACTTCATCGCCGAGAAGGCCGTCACCGGCACCGACTTCGACCCGCTGCAGTGT
CGGTTCAGCCTCCCGCCCTACGGCGTGATA--------CACAGCCTGCGCCCCGTCCTCACCGCCGAAGAGCTCCAGGCT
GCCAACCTGCGGTACGAGGACGACAACGCGCAGGAGCAAAGGACGACTGGGGAGAGGAGGAAAGAGAGGAGGCACCGCGC
CGGCGGGCTGCCCGTGCTGGTGGTCGACCCCCACGCCGGATCCATTGAGCTGCGGCTGTCGCGCGGCGCCCACAGCACGA
CGCTCAAGGGGGCTGGGTATCTCGATTTCATCAACGAGTGCAGCTTCACCGTCCACGACGTCGTCCGGATCTGGGCCTTC
AACCCCCACGCATCTCCTTCAAACGTTGAGGAAAGCCCCCTCTATCTTGTCATCGCCAAGAAACCAACACCCCAGACTTG
ATTGGGTTGAGTTTGAATCAAGGATCTAATCAGATAACGCTTTTCTAGGAC-----------------------------
---------------------------------------------------------------------------TATAT
AGGGCCATTTTTTGGATGTAAACAGACTGATAATTACTCCCTCCGTTTCTAAATATAAGTCTTTGTAGAGATTTCACTAT
GGACCACATACGGATGTATATAGATGCATTTTAAGTATAGATTCATTCATTTTGCTCCATATGTGATCTAGTGAAATCTC
TCTAAAGACTTATATTTAAGAACAGAGGGGGTATATTGAAAGCTAAAGAAGTACTCGCTCCGTAAAGAAATTAGTGATCT
GGACACTCTTATATTTCTTTACGGAGGGAGTACCTCCTACGGCCGTTTTAATTTTACTTTTGTTTGGTATATTTTACAAT
GTGGTGATTCCACAACAGTGTGACTTCGCTCTGTTTGCACAGATGTTTTCCAATGCAGTAGCAAAAAA--TTAGGTCGAT
TGAAGTGCTGAGACAGAGCCCAAACCTTGGACATGATATGTTTGTTTTCAAAAGTTGAAAATAAAATGCTC---------
-------------------------------------TTTTTGTTAAAACAGCATGCTTATATATAGAATATCTCGGATA
TCTGGGTCAGCACCCTTGAACAGTT-TATTATCTACATTCTGGTTGATTTTAGAACAAAAAT-TTCATGCTTCCTATGTT
TT---------------TATCTGGACTAACACATGATTAAAACTATCAATGTTTTTATTTTGAACTAAACCTATCAGTGT
TTGTACTTAGTACTTATAGGGGTCACTTAGGTTCTCTGAAGAAGAATCATGTA---GAAAGCAACAGAAACTATATGTAG
AAGTAATTCGATCCTAATGAATGAAGAATTGGGTACTTACTCTCTCAAAAAAGGTCGGTACCAGCAT--AAAAACATAAT
TTGCATAGTTTATCTGTAAGACATCAGTTTTCTAACAAAGCCGACATCCCTGCAACAT---GGCATACGTGCCTTACGAC
AGAGTACTAGAGTTGCTAAATATTCCAATGGGAAAAGACATGCCCAAGTTAAAAGGTT
>chr2A_762
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-----------------------------------------GGCGTTCGCAACTGTCACCCTAGTTGGCGAACGTTCGCC
AGCTAGCAGGGTCCAAAAAAAAATTCGAGTCAGACCCCAGCATTAAATGCATCCATTTCATAAGCCGCATCCGTCCTTCT
CCACGACTCCAACTCCAACTCCGATCCCATCAATATTTGCGATTCGTCTATATAGCCCAGCGACATAAAAGCATCTACAA
CCGCATTGGACAAATATGACCTCTCAAACACCCGCGGACGCGTCCATGGGCAATGATCGGGCACTCGTCAAATAGCATTG
TCCACATCCGTGCATCTCATATATGATCCCCTATATCCATACTAAACCATGGAACGTCGATCAAATTACGTAGATCAGCA
AACATACATAGTCAAGCACAATACTTTCACCAAAAGATCATGATCGGATGTTCAACCGACCACCAAAGTTCACATAAATG
ATGGACAACTTGAAACTACGTCTAAAACTTGAAATTAAATTGAAGCAAAGCGGACCTTCACCACTTCCGGGTCGGCCCCT
TCCCCTTCTGGTCGTCGGTGCAGCTATAGCCGCCGGTGGCCGGTGGAGGATCGTCGTTGTCGGAGGAGAAGCGGCTACTA
GTGCTCGACTTGGTCAACGCAGTTACCGGAGTCGTCGGAGTGGTCGAATCGGAGGAGAAAGAAGAGACGGATCAAGAATG
AAATGGGTTAGGGTTTCTGGATTGAGGATATTTATGAGGACAGGATGGACCGGGCCGACCGGACGTTCCATATCCGTCCC
ATGTTTGTGCTGGATATGAGGACGCCGGACAACCAGAACGTTTGAGGGCTGTTTGAGGCGCCCTAACACAGCCGAATAGC
CACGAGACTCCTTGTGTTGATTGCATTACAGCCGAATAGCCACGAGACTCCTTGTGTTGATTGCATTAAATGCGTCCAGG
TCACAAGCCGCGCTCGTCCTTCTTCTCCACGACTTTAA-TCCAACCTAGACTCGGATCCCAACACTACTTGCGATTCGTC
TATATAATCCCGGGACATAACAAGCACCTGAATAATTCAGCCACGAGTCTCC------TTGTTGATTC------------
----CGTTCGAGGTCGCCCACCATGTCCATGAGCGCCCCAGCCGAGCCGTCGTGGCTCCGCCAGGACCTGCTCCCGCACC
TCAGGCTCCCGGCGGACCTGCCGGTGCACTTCATCGCCGAGAAGGCCGTCACCGGCACCGACTTCGACCCGCGGCAGTGT
CGGTTCAGCCTCCCGCCCTACGGCGTCACGCCGTCACGCACAACCTGCGCCCCATCCTCACCGCCGAGGAGCTCCAGGCT
GCCAACCTGCGGTACGAGGACGACAACGCGGGGGAGCAGGTCACGACCGGGGA------------GAGGAGGCAACGCGC
CGGCGGGCTGCCCGTGCTGGTGGTCGACCCCCGCGCCGGACTCATTGAGCTGCGGCTGTCGCGCGGCGCCCACAGCACGA
CCCTCAGGGGGCCGGGGTATCTCGATTTCATCAGCGAGTGCAGCTTCGCCGTCGACGACGTCGTCCGGATCTGGGCCTTC
AACCCCCACGCATCTCCCTCGGACGTTGAGGAAAGCCCCCTCTATCTTGTCTTCGCCAAGAAACCAACACCCCAAACATG
ATTGGGTTGAGTTTGAATCAAGGATCTAATCAGATAAAGCTTTGTTCTCTAAATAATTGAAAGGATCGGCTACCGATGGT
AAAATTCTTCTGTCTGTCTCAAGACTCTTGATAGCAAGAGAACGTTTGCATGTAGTTCTAGTTTTTTTTTAGAAATATAT
AGGGCCATTTTTTGGATGTAAACAGGCTGGTAATTATATTT---------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TTGAAAGCTAAAGAAGT----------------------------
----------------------------AGTACCTCCTACAGCCGTTTTAATTTTACTTTTGTTTGGTATATTTTACAAT
GTGGTGATTCCACAACAGTGTGACTTCGCTCTGTTTGCACAGATGTTTTCCAATGAAGTAGCAAAAAAAATTAAGTCGAT
TGAAGTGCTGAGACAGAGCCCAAACCTTGGACATGATACGTTTGTTTTCAAAAGTAGAAAATAAAATGCTC---------
-------------------------------------TTTTTGTTAAAACAGCATGCTTATATATAGAATATATCGGATA
TCTGGGTCAGCACCCTTGAACAGTTTTATTATCTACATTCTGGTTGATTTTAGAACAAAAAT-TTCGTGCTTCCTATGTT
TT---------------TATCTGGACTAACATATAATTAAAACTATCAGTGTTTCTATTTTGAACTAAAACTATCAGTGT
TTGTACTCAGTACTTATAGGGGTCACTTAAGTTCTCTGAAGAAGAATCATGTACTAGAAAGCAACAGAAACC--ATGTAG
AAGTAATTCGATCCTAAAGAATGAAGAATTGGGTGCTTGCTCTCTCAAAAAAGGTCGGTACCAGCAC--AAAAACATAAT
TTGCATAGTTAATCTGTAAGACATCAGTTTTCTAACAAAGCCAACATCGGTGCAACAACACGGCATACGCACCTTACGAC
AGAGTATTAGAGTTGCTAG-TATTCTGATGGGAAAAGACATGTCCAAGTAAAAGGTT-
>chr2D_833
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------GCCGCGTTCGTCCTTCGTCTCCACGACTCTGAGTCCAACCTAGACTCCGATCCCAACACTACTTGCGATTCGTC
TATATAATCCCGGGACATAACAAGCACCTGAATAATTCAGCCACGAGTCCCC------TTGTTGATTCCGACGTAACGAA
GTAGCGTCCGACGTCGCCCACCATGTCCACGTGCGCCCCAGCCGAGCCGTCGTGGCTCCGCCGGGACCTGCTCCCGCACC
TCGGGCTCCCGGCGGACCTGCCGGTGCACTTCATCGCCGAGAAGGCCGTCACCGGCACCGACTTCGACCCGCTGCAGTGT
CGGTTCAGCCTCCCGCCCCACGGCGTCATA--------CACAACCTGCGCCCCGTCCTCACCGCCGAGGAGCTCCAGGCT
GCCAACCTGCGC-ACGAGGACGACAACGCGCAGGAGCAAAGGACGACTGGGGA------------GAGGAGGCAACGCGC
CGGCGGGCTGCCCGTGCTGATGGTCGACCCCCGCGCCGGACTCATTGAGCTGCGGCTGTCGCGCGGCGCCCACAGCACGA
CCCTCAGGGGGCCCGGGTATCTCGATTTCATCAACGAGTGCAGCTTCACCGTCGACGACGTCGTCCGGATCTGGGCCTTC
AACCACCGCGCCTCTCCCTCAAACGTTGAGGAAAGCCCCCTCTATCTTGTCATCGCCAAGAAACCAACACCCCAAACTTG
ATTGGGTTGAGTTTGAATCAAGGATCTAATCAGATAAGGCTTTTCTAGGAC-----------------------------
---------------------------------------------------------------------------TATAT
AGGGCCATTTTTTGGATGTAAACAGACTGATAATTA--------------------------------------------
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---------------------------------TATTGAAAGCTAAAGAAGTACTCTCTCCGTAA---------------
-GACACTCTTATATTTCTTTACGGAGGGAGTACCTCCTACAGCCGTTTTAATTTTACTTTTGTTTGGTATATTTTACAAT
GTGGTGATTCCACAACAGTGTGACTTCACTCTGTTTGCACAGATGTTTTCCAATGCAGTAGCAAAAAA--TTAAGTCGAT
TGAAATGCTGAGACAGAGCGCAAACCTTGGGCATGGTATGTTTGTTTTCAAAAGTTGAAAATAAAATGCTCTTTTTGTTA
AAACAGCATGCTTTTTTTTGTTTAAACAGCATGCTTTTTTTTGTTTAAACAGCATGCTTATATATAGA---------ATA
TCTGGGTCAGCACCCTTGAACAGTTTTATTATCTACATTCTGGTTGATTTTAGAACAAAAAAATTCATTCTTCCTATGTT
TTGTAAGCAAGCAGAAATATCTGGACTAACATATGATTAAAACTATCAGTGTTTTTAGTTTGAACTAAAACTATCAGTGT
TTGTACTTTGTACTTATAGAGGTCACTTGGGT--TCTGAAGAAGAATCATGTA---GAAAGCAACAGAAACT--ATGTAG
AAGTAATTCGATCCTAATGAATGAAGAATTGGGCACTTGCTCTCTCAAAAAAGGTCGGTACCAGCATATAAAAACATAAT
TTGCATAGTTAATCTGTACGGCATCAGTTTTCTAACAAAGCCGACATCCGTGCAACAT---GGCA---------TAAGAC
AGAGTATTAAAGTTGCTAG-TATTCTGATGGGAAAAGACATGTCCAAGGTAAAAGGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S
--S-SS--S-----------------------------------------------------------------------
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----------------------------------------------------------------------S--------S
---S--------------S-S----------------------------------------S--SS--------------
----SSSSSS-SSS-S-S-SSS--SSSSSS-----------------S----SSSSSS----------------------
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--------------------------S---------------S------------------------S------------
-----------------------------------------------------SSSSSSSSSSSS---------S-----
--------------------------------S-------SS--------------------------------------
-S----S----S-S---------------------------------------S--------------------------
-----------------S--------------------------------------------------------S-----
-------------------------------------S------------------------------------------
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------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S--------SSSSSSSSSSSSSSS
S---------------------------------------S---------------------------------------
-------------------------------------------------------------------------S------
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------------------------------------------------------------------------S-------
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-------------------------------S----------------S--------------------S----------
------------------------------------------------------------------------SS------
--------------------------------------S-----------------------------------------
----------S--------------------------------------S-------------------SS---------
------S-----------SS-----SS---------------S---------------
>forward_95
---------------------------------------------------------------------------ACAAG
CATGCGTTGTGTGTC-----------------------------------------------------------------
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>reverse_2135
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------------------------------------------------------AGGAGGAAAGAGAGGAGGCA------
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>forward_446
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--------------------------CAATGAGGCCCGTACTGTGT----------------------------------
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>reverse_2136
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-------------------------------------------------------GGAGGAAAGAGAGGAGGCAC-----
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>forward_668
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--------CATTCGATGGCCGGCATTTT----------------------------------------------------
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>reverse_3490
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-------------------------------------------------CTGCAACATGGCATACGTGC-----------
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