>input_sequence_77160
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----------------------------------------------------------------ATGGCGGCCACGGAGG
GCGAGAAGAAGATTAC---GCTCAAGAGCTCGGAGGGCGAGGAGTTCGAGGTCGACAAGGCGGTCGCCATGGAGTCCCAG
ACTATCCGCCACATGATCGAGGACGAGTGCGCTGACAACGCCATCCCGCTCCCCAACGTCAACTCGAAGACCCTCTCCAT
GGTCATTGAGTACTGCAAGAAGCATATCCAAGCCAGCCCCAAGCCGGCCGACTCCGGCGCAGCCGCCGACGCCAGCTCCT
CCGCTTCTGCGGCAGCCGCGGCGCCAGCCCCCACCGAGGACATGAAGAGCTGGGACGCT----GAGTTCATCAAGGTCGA
CCAGGCCATCCTCTTCGACCTCATCCTGGCTGCAAATTACCTTGACATCAAGGGATTGCTGGACCTTACTTGCCAGACTA
TTGCCGACATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTTACACCGGAGGAG
GAGGCCGAGATCCGCAGGGAGAATCAGTGGGCTTTTGAGTAG--------------------------------------
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>chr2A_1_TraesCS2A01G522300
GTGTTGTGGCCCGCCATCGACGTGGAGGAGCAGTAGCTGCGATTTGTCAAGACCACTCTGGAGCTTACTTGGGGTCGTCC
GCGGTGGTGTTTCGAGGAGTAAATGATATGGTGATCCTGGAATCTTATGCATGTAGGGAGGGGCTTGCACTTGCAGAGGA
CCTGGATATTCAGCAACTACTGATAGCATCAGACTGCCAGAATGTAGTCAAGGACATAAATCAGGGCACGGGAGGACCAC
ATTCGGCAATTGTTCATGAAATAGTAGCTCGTAGAACTAGCTTCAGTTTCTGTAATTTCGTTCATGAGCATAGGAGTCAT
AATTTTGAGACTCACAATCTCGCCAAGTTTGCTTGTAACCTTGGCTTAGATAGACATGTTTGGTTGGGGGTTCCTCATGA
CCCAAACCGTGTACCTATGAACATTTTTGAGCATCAATACAGACACAAGCGCTCATATACACGCGCATACACTCACCCCT
ATGAACGCACACACGCACACCCTACCCTTATGAGCACCTCCGAGAGACTGAGCCGGCATATCATCTTGAGATTTACGAAG
TCACCGTAGGCGCATCATCGTCGACGGGTGGGGATACCACTGTCCACCTAACCAACTCAACCACAGGTTGATTCCCGTGT
ACCTATGAACATTACTATTCAATAAAGTGGCGAGATTTCTCAAAAAAAAACCTACGAGTTTTTTTTAGACAAACAAATTC
ACTAGCAGACACGTTGACGAGACCTGACGCAATGACGAGGGACTCCTTGATGAAGATGAAGATGAATACGGCCCGAGTCC
GACTCCTTGATGAATACGGCCCGAGTTTACGATACCACCACCACT-----------------------------------
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--------------------------------------------------------------------CCCGCCGTCCCA
ATAAATAGCCCCGGCCGGTTCCCAGCCCCAGCCCAAGACGCAAACGAGCTCCCATCTTTCGTTCTGTCTTACGCCGCAAC
GTTTCTCGCTAGGTTTCGCTAGGGTTTCGATCGTATCGCGTTCGCCTCCCAATCCT-CGGATCGATGGCGGCCACGGAGG
GCGAGAAGAAGATTAC---GCTCAAGAGCTCGGAGGGCGAGGAGTTCGAGGTCGACAAGGCGGTCGCCATGGAGTCCCAG
ACTATCCGCCACATGATCGAGGACGAGTGCGCTGACAACGCCATCCCGCTCCCCAACGTCAACTCGAAGACCCTCTCCAT
GGTCATTGAGTACTGCAAGAAGCATATCCAAGCCAGCCCCAAGCCGGCCGACTCCGGCGCAGCCGCCGACGCCAGCTCCT
CCGCTTCTGCGGCAGCCGCGGCGCCAGCCCCCACCGAGGACATGAAGAGCTGGGACGCT----GAGTTCATCAAGGTCGA
CCAGGCCATCCTCTTCGACCTCATCCTGGCTGCAAATTACCTTGACATCAAGGGATTGCTGGACCTTACTTGCCAGACTA
TTGCCGACATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTTACACCGGAGGAG
GAGGCCGAGATCCGCAGGGAGAATCAGTGGGCTTTTGAGTAGAGAAGCATATATAGGCGTTGAATTCTGCTTAGTATTCG
TCATGTACACGTTTAGGAGCTG-CTTTTTTAGTTTTTATTAACTCGTTGTAATTCTTCGGAACTCGTTGGGGTCGTTAAA
CATTGTAGAGAAGAGAAACAGTGCTGCGTTGAATTAATGCCTTAGTATTCGTCATGTGTCCACATTTGAAACATTTTTTT
TTTTGAAATTTCTTTACTTCAAGTGGATGTGTTATTTGTATCTTTAGACGATTTATGTCGTGTGATTTGAGATTAACAAA
ACAAAGGACATGATGCCATCATCGAGTCATAAACTCGACAGCTACGTTTTGGTATGGTGACCATTTAGAACCAGTAGAAC
TTTGAGGACAAGTGATAGAAGACTATCCCTATATACAAACATATTTTTCTCGAAACAG------AAGCTTTGTCTCATCG
ATTAATTAAGAGAGGAGAATATAGCTACTCCCACACACATCCCCAAGTTACAAAAGTCAATCTCCG-----GATATGACC
CAATTTTTGTTGCTCCCACAATAACCCAAAGTTTTACTTATCTCTTGATCATGCCAAAGATGACCCCGGCGGCGGGGTAG
ATTTCTGTTGAAAAACCCATGCATTCCTCTCATCTCAAATTTGTCCAAACCAAGGAGCTCAAGCATGACTTATTTCGTGC
ACTGAGAGCACCCACCTTCATGAGGGTGTGGATTATTACTTGGTATCGAAGCATACGGAGAGCGGGC------CATTGGC
CTCGGCATATAACGCACAATTCATTAGGTCAACAAGCACAACTTTGTGATGTTCCATTTGGGGTGCTTGGGCT-------
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-----------------------------------------------------------CGGGTGGTTAGATTCCTTGTT
GTGGAACCAGCCTATTAGGGTTCAATTTCTAGACCTAGGATTGATGCCCGTGTTTTCCTGGATTTATCTCAGTATTTCCT
ACGACGTCCGTTCAGTGGAAGTGATTATACTGTGTCTAGAAAGAAAAAAAGAACACTATAGTAGCTTAGCTAGGTAAACA
TGTTTC
>chr2D_719
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------------------------------------------------------------------------------TC
AGTAGCAGACACGTTTACGAGAC-----GCAATGACGAGGGACTCCTTGATGAAGATGAACATGAATAGCACCCGAGTTC
GACTCCTTGATGAATGCTCCCTCCGTCCGTGAATAAGGGGGTGCTTGGTTCCAGGGACTTTTTTGTGTTGGGACTAAAAG
AAGTCCCTAGCAAACCAAATAAGGAAGGACTTTTTTGGGACTTTTTGCTGCAAGTCCTTAGAAGCACCTCCTTAAGAGTC
TTTTTCAGAAAGTCCTAGGAACTAGAAAAAGTCTTAAACTAGAGAACCAAACACCACCTAAGTGTACATCTAGCTTTTGT
CTTAAATCAAAATTTTAAAACTTTGACCACCTTTCTAGGAAAAAGTAAAAGCATTTATGGCACCAAATTAGTATCACTAG
ATTCGTTTTGAAATGTATTTTGATACTATATCAATTTGATGTCATATATGTAATTACTATTTTCTATAAAGTTGGTCAAA
ATTTTGAAACTTTGACTAAAACAAAAGCTAGATGTACACTTATTCGCGGACGGAGGGAGTATATACGACCCGTCGCCCCA
ATAAATAGCCCCGGCAGGTTCCCAGCCCCAGCCCAAGACGCAAAA-AGCTCTCATCTTTGGTCCTCTCTTACGCCGCAGC
GTTTCCCG-TAGGTTTCGCTAGGGTTTCGATCGTATCACGTTCGCCTCCCAATCCT-CGGATCGATGGCGGCCGCGGAGG
GCAAGAAGAAGATCAT---GCTCAAGAGCTCGGAGGGTGAGGAGTTCGAGATCGACAAGGCGGTCGCCATGGAGTCCCAG
ACCATCCGCCACATGATCGAGGACGAGTGCACCGACAACGCCATCTGGCTCCCCAACGTCAACTCGAACATCCTCTCCAT
GGTTATTGAGTACTGCAAGAAGCATGTCCAGGCCAGCCCCAAGCCGGCCGACTCCGCCGCCGCCGCT---GCCAGCTGCT
CCACCTCTGCTGCAGCTGCGGCGCCAGCCCCCACCGAGGGCATGAAGAGCTGGGACGCC----GAGTTCATCAAGGTCGA
CCAGGCCACCCTCTTCGACCTCATCCTGGCTGCAAATTATCTTGACATCAAGGGATTGTTGGACCTTACTTGCCAGATTG
TTGCCGACATGATCAAGGGCAAGACTTCCGAGGAGATCCGCAAGACATTCAACATCAAGAATGACTTCACACCCGAGGAG
TAGGCGGAGATCCGCAGGGAGAACCAGTGGGCTTTTGAGTAGAGAAGCATACATAGGCGTTGAATTCTGCCTAGTATTCG
TCATGTCCACGTTTCAGAAATGTCTTTTTTAGTTTTTATTATGTCGTTGTAATTCTTCGGAACTCGTTGGGGTCGTTAAA
CATCATAGAGAAGAGAAACAGTGCTGCGCTGAATTAATGCTTTAGTATTTGTCATGCGTCCACATTTGAAACATTTTTTT
TTT--AAATTTCTTTACTTCAAGTGGGTGTGTTCTCTGTATCTTTAGACGATTTATGTCGTGTGATTTGAGATTAACAAA
GCAAAGGACGTGATGCCATCATCGAGTCATAAACTCGACAGCTACGTTCTGGTATGGTGACGACAC--------------
-----------GTGATAGAAGACTATCCGTATATACAAACATATTTTTCTTGAAACAGAGGCATAAGCTTTGTCTCATCG
ATTAATTAAGAGAGGAGAATATAGTTACTCCCACACACATTCCCAAGTTACAAAAGTCAATCTCCAGATATGATATTACC
CAA-TTTTGTTGCTCCCACAATAACCCAAAGTTTTAC---------------------------CCCGGCGGTGGGGTAG
ATTTCTGTTTAAAAACCCGTGCATTCCTCTCATTCCAAATTTGTCCAAATCAAGGAGCTTGAGCATGACTTATTTCGTGC
ATTGAGGGCACCCACCTTCATGAGGGTGTGGATTATTACTTGGTATGGAAGCATACGGAGAGCGGGCACTACTCATCGGC
CTCGGCATATAACGCACAATTCATTTGGTCAACAAGCACAACTTTGCGATGTTCCATTTGGGGTGCTTGGGCTCTGTCAA
AGGCAAAATTGTACCAAATCTGCAAGAAACTAGCGACATCACACTTTAGCTTATCTATAACGTGCATGTCGCCTTGATGC
ATGCTAGCGATTCCTAGGAGAAAAACAGTAACCAGATTGCTTTTTGGGCTAGGCCCAAGTACATGTTCTGTGGGCAACAC
GGGTCTATGGCTCGCTACAAGCAAGGTATAAACAAATGTTTCAAAAAAAAGCAAGGTATATAAACAGGTCCGTCGAGCCG
TCCAGGCCACTGAACCAACGCGCGTGATAACACGATTGGTACGCGTATACATGGAAAATCCGCGTTCCTGGGGACGTACC
TTCGGCCTAAGAGGAAATCCCGTTGAAATTGGAACACTATAGTAGTTGTGAACTGAGCTCGGGTGGTTAGATTCCTTGTT
GTGGAACCAGCCTATTAGGGTTCAATTTCTAGACCTAAGATTGATACCTTTATTTTCCTGGATTTATCTCAATATTTCCT
ACGACGTCCGTTCAGTGGAAGTAATTATACTGTGTTTAGAAA---AAAAAGAACACTATAGTAGCTTAGCTAGGTAAACA
TGTTTC
>chr5B_978
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----------------------------------------TTCGCCTCCCAATCGTCCGGATCGATTGCGGCCGAGGAAG
GCGAGAAGAAGATGATCACGCTCAAGAGCTCGGACGGTGAGGAATTTCAGATCGAGGAGGCGGTCGCCATGGAGTTGCAG
ACCATCCGCCACATGATCGAAGACGACTGCGCCGACAACGGCATCCCGCTCCCCAACGTCGACTCCAAGATCCTCTCCAA
GGTCATCGAGTACTGCAAGAAGCACGTCCAGGCCAGCCCCAAACCGACCGAATCCGGCA------------CCAGCTCCT
CCACCTCTACTGCAGCCGCCGCCCC------CGCCGAGGACCTCAAGAGCTTTGACGCC----GAGTTCGTCAAGGTCGA
CCAGGCCACCCTCTTCGACCTCATCCTGGCTGCAAACTACCTCAACATCAAGGGATTGCTCGACCTCACTTGCCAGACTG
TTGCAGACATGATCAAGGGAAAGACTCCGGAGGAGATCCGCAAGACTTTTAACATCAAGAATGACTTCACACCCGAGGAG
AAGGCGGAGATCCGCAGGGAGAATCAGTGGGCTTTTGAGTAGAAAA----------------------------------
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>chr3B_978
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----------------------------------------TTCGCCTCCCAATACT-CCGATCAATGGCGGCCGAGGAAG
GCGAGAAGAAGATGATCATGCTCAAGAGCTCGGACAGCGAGGAATTTCTTGTCGAGGAGGCGGTTGCCATGGAGTCTCAA
ACCATCTGCCACATGATCGAGGACGACTGCACCGACAATGGCATCCCGCTTCCCAACATTGACTGCAAGATCCTCTCCAA
GGTCATCGAGTACTGCAAGAAGCACGTCCAGGCCAACCCCAAACCGGCCGACTTCGCCGCCACCG---ACGCCAGCTCCT
CCACCTCTAATGCAGCCACCGCCCC------CGCCAAGGACCTCAAGAGCTTTGACACCAATAGAGTTCGTCAAAGTCGA
CCAGGCCACTCTCTTCGACCTCATCCTCGCTGCACACTACCTCAACATCAAGGGATTGCTCGACCTTACTTGCCAAACTG
TTGCCGACATGATCAAGGGAAAGACCCCCGAGGAGATCTGCAAGACTTTCAACATCAAGAATGACTTCACACCCGAGGAG
GAGGCCGAGATCCGCAGGGAGAACCAGTGGGCTTTTGAGTAGAGAAG---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S-------------S-------SSSSS--------------------------------S-------SSS-------S-
---------------S-SS--SSS--SSSS--SSSSSSSSSSS-------------------------------------
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------------------------------------------------------------------------S--S----
---------------S----------------------------SS-----S-------S--S--S------------S-
-----S--S----------------------------S-----------------------------------S------
-------------S-S----------------------------------------------------------------
--S-----------------------------S-------------------------------------S---------
-------------------------S----S-----------------------------S-----SS------------
--S-S-----S-----------------------------------------------S---------------------
--------S----------------------------------------------------------------------S
----------------------------------------------S--------------------S-----S------
---------------------------------------------------S------------------S---------
------S-------SS--SS---------------------SS-------------------------------------
---SS-----------------------S-----------S--------S------S-----------------------
---SS---------------------S------S-S--------------------------------------------
S--------S--------------------------------------S------------S-SSSSSSSSSSSSSSSSS
SSSSSSSSSSS-----------------S---------------------S-----------------------------
------------------------S---------------S------------------------S----------S---
---S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------
---------S--------S--------------SS--------------S---------SS-------------------
-S----S---------------------------------------S-----------------------------S---
-------------------------S--------------------S---------------------------------
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-------------------------------------S-------S--SS-S-------------------S--------
----------------------S------------S------SSS-----------------------------------
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>forward_748
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--------ACACGTTGACGAGACCTGAC----------------------------------------------------
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>reverse_2529
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------------------------------------------------TCATGCCAAAGATGACCCCG------------
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