>input_sequence_77149
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------------------------------------ATGATTGGCGGGGCGGGGCGGCCG------CGGCATGGCGGTGC
GGTGGCGCGGCCGCGACGCAGGTTTGAAGTCGCTGGTGGCGAGGAGGAGGG---GGAGGCCACGACGGCGGCGGCGGCGA
GCGCGGGGTGCAGCTGCCGGTCGTGCGCGGCGGTGGCGGTGGCGGACTGCGTGGCGCTCGCGTGCTGCCCCTGCGCGGTG
GTCAGCCTGCTCGGCCTGGCGCTCGTCAGGGCGCCGCTCGCCGTCGGCAGGCTGGTGATCAGGGCCAGGCGGAGGCGGCG
GGCGCTGCTGCGCGGCAAGCTGGTGCGCGACGTGGCCGCCCACGCCGC---CCCGGCGCCGAGCGACGGCGGTGGCGCCC
ACGAGAAGGGCGCCGAGAAGGAGGCCGACGTCCGCACCGGCGTGGACGCC---------A---CGGGCGGCGAGGTTGGG
ACGGCGCGAGACGTCGATGATCACGAGGCGGAGCTGGCGTGGCTGGAGGAGATGTACCGGACGGGGCGCTGGGGCTTCGG
CCGCGTCTCCTTCTCGGCCAAAACCCCGTGA-------------------------------------------------
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>chr1B_1_TraesCS1B01G437000
TTTTGTCAGTCCTTTCTTTCATTTATTTTATTCTATCCTAACATCCCCACTTGATTAATGAATTTTGGTTGTTGGTAAAC
TACAACAAAAGGGAGTTCAGAAATCAAG----------ATGACCATCCTGTCCATCATTGCACACTTGTCATCTTCTGAT
CAATGTACTACTACTGTGAAGTCTGAACCTGTTCTTCACTCTGGAGCGAAGCCGCATGCAGGCCCCCATGCTCTGCGCCC
CCACCCCACACAGAACAAATCTCTCTGCC-------TTGGCGATGCGACGTCCTGGGACTGGAAGCGAAGGAAATACGTA
CGTACAAGAGGATCAGACAGGCGATCGGGGCCGTGTTGGCAGCTACAGTTGGCGCTCTGAATCCGGGCGTGCCGGCACGG
CGGCAGGCCCGGCGACGCACGGCCGCTGTGCCCCGAAACGGCACGGCCCTTAACTCCACCCACGGGCCCCCCCGGAAGCG
TGGGAGGAT-AAAAGGCGCGCAGGGGTTGCAGGTTGCAGTTTTGGAGCACTGTAGCTACCCGTCCTCGCGAAATCGGACG
CTATCACCCCTTCGTTTATC---------------TTGTACCCGCGCCCAAGCATGGCCCCGCCTGTGCGTGCCTACGTA
TCATCATCATCAAAGTTTTTACCGCACGCCCACGATCGAGAG-----TGAATCTCTTGGATGCGTTGCCTTCTCGCTGCG
CGCTTTGATCTGG----------------GCGGCGAGCCTGACAGACGTGGGAGTGAATTGCTTGCCGTTTTTCACAGTT
TCGGGTGCTTGGTGGTAGAGAAAAGAGAGCTCTC---CTTTTACTGGGCGCACGCGGATCACCCGTCCCGCCCGTCCCAA
CTGTTTACCCGAA---CCCCACCTACAATCTACAAAGTGCGCGCTCTCGTGTCACGACCCGGCCATTTCCTCCGTT----
--------GCCGCGGTTCCCCAGGCTAGCTACTACTAGCCGACTGACCACAGTCACAATCACAATTCACAAACACCTTTG
CTTGGCTCCGTCTGAC----CGTCTGTCTGCGATCGATGATTGGCGGGGCGGGGCGGCCG------CGGCATGGCGGTGC
GGTGGCGCGGCCGCGACGCAGGTTTGAAGTCGCTGGTGGCGAGGAGGAGGG---GGAGGCCACGACGGCGGCGGCGGCGA
GCGCGGGGTGCAGCTGCCGGTCGTGCGCGGCGGTGGCGGTGGCGGACTGCGTGGCGCTCGCGTGCTGCCCCTGCGCGGTG
GTCAGCCTGCTCGGCCTGGCGCTCGTCAGGGCGCCGCTCGCCGTCGGCAGGCTGGTGATCAGGGCCAGGCGGAGGCGGCG
GGCGCTGCTGCGCGGCAAGCTGGTGCGCGACGTGGCCGCCCACGCCGC---CCCGGCGCCGAGCGACGGCGGTGGCGCCC
ACGAGAAGGGCGCCGAGAAGGAGGCCGACGTCCGCACCGGCGTGGACGCC---------A---CGGGCGGCGAGGTTGGG
ACGGCGCGAGACGTCGATGATCACGAGGCGGAGCTGGCGTGGCTGGAGGAGATGTACCGGACGGGGCGCTGGGGCTTCGG
CCGCGTCTCCTTCTCGGCCAAAACCCCGTGAGCCGC----CCGCGGCGCCCGTTCGAGCGCCGGCATGACAGCCGGCCGG
CGCGTGCACGGCGGCGGGTCAACTTCAGATATCTTCTAGCAGCCTGGCAGTAGTGAGTAGTGAGTACGTACGATCAGCCG
GGTGCATGCACCGCGCCGGCGTGGACAGGGATGCGCGTCGCGCTTTTTTCTCGCGCACGTTCGAATCTCGA-TTTATTCA
GAGCTGGTTAGAATTGACATGTTATCTTCGATTTGCCTATGCCTAGTGCTAATTAGAAGCGTGCGAATCTCAACTGGGAG
CACGTGTTGGCTTCGTTTGTCATGGAATCCACATCATGTTCCCCCTTGCA------------------------TTTGCC
TATCTATA----------CTTCTCTTAGTACATCTTCTCTTTCATTTCCACTTGTTTTTTATTTCTTTTTCGCTGCCCGT
TATGGTTCTCATAGTACTTTCTATCCGTAG-AAAAAGAAATGATATGGTCCCTTGCGAAAAAGGAAATGGCATTCTTTCT
TGACTGGC------------------------------------------------------------------------
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---------------------------------------------------------------------CGCTGATTCAC
TCAACCAACCGTCACTTGACTG---------------------------------------GCCTCCACCATCGCCGCCC
CCTGCCCCCCTTCTCCTAGGCAGATTGGTCAATGACATTCTTTCTAGGAAAATTTTATCTCTATAACATGGCAAGTTTGA
AATATATATTTTTAACAATCACGTGGCAAATTAAG-AACATCCCGA------AA-ACATGACAAATTGAAATATGTAATG
GTCACACGACATTTTTACGATTACACTTGTCCCATGTGTCCACGGCAAATTCCTAAATTTGTGATCCTTTCAAAGGATAA
ATTCCATAACGTTGACATCTTTTTTTTTAAAAAAGAACAAGATTTGTAAGTCTGCCTTGTCCTC-TACAAATATTCAATA
TTTGAAATGTTCTTTTAGAATACTATTTTC--A-TTTTTTTCCTATGCAATTTTATTATAGGTACCATGGCAATTTTACT
AATTAGACCATGGCGGTTTTT-----------------------CAATTAGACCATGGTAGTTTTATGGTAACTACCATG
GCAATT
>chr1A_43
------------------------------------------ATCCCCACTGGGTTGGTAAATTTTGATCGTTGGAAAAC
TAAAACAAAAAGGAGTTCAGTACATGA---------------------TGTCCATCATTGCACACTTGTCATGTTCTGAT
CAATGTACTACTAC-------TCTGAACCTGTTCTTCACTC-----CGAAGCGGCATGCAGGCCCCCATGCTCTGCACCC
CCCACACA----GAACAAATCTCTCTGCCTTGGGCCTTGGCGATGCGACGTCCTGGAGCTGGAAGCGAAGGAAATG----
CGTACAAGAGGATCAGACAGGCGATCGGGGCCGTGTTGGCAGCTACAGTTGGCACTCTGAATCCTGGCGTGCCGGCACGG
CGGCAGGCCCGGCGACGCACGGCCGCTTTGCCCCAAAACGGCACGGCCCTTAACTCCGGCCACGGGCCCCCC-GGAAGCG
TGGGAGGAT-AAAAGGCGCGCAGGGGTTGCAGGTTGCAGTTTTGGAGCCCTGTAGCTACCCGTCCTCGCGAAATCGGACG
C---------------TATC---------------TTGTACCCGCGCCAAAGCATGGCCCC-CCTGTGCCTGCGTACGT-
--ATCATCATCAAACTTGTTACCGCACGCCCACGATCGAGAGCGGAGTGAA------------------TTCTCGCTGCA
CGCTTTGATCTCTTGCAGCTTGCAGGGGAGCAGTGAGCCTGACGGATGTGGGAGTGAATTTCTGGCCATTTTTCACGGTT
TTGGTTGC---------GAGGAGAGAAAGCTCTCCAGCTTTTACTGGGCGCACGCGTGTCACCCGTCCCGT-----CCAA
CTGTGTACCCGAACCCCCCCACCTACAATCTACAAAGTGCGCGCTCTCGTGT---------GCCATTTC----------G
GCCGCTGCGCAGCGGTTCCCCAGGCTAGCTACCACCTA----------CTGGCTGA---------TCGCAAACACCTTTG
CTTGGTTCCGTCTGAC----CGTCTGCCTGCGGTCGATGATTGGCGGGGCGGGGCGGCAG------CGGCATGACGGTGC
GGTGGCGCGGCCGCGACGCAGGTTTGAAGCCGCTGGTGGCGAGGAGGAGGGAGGGGAGGCCACGAC---------GGCGA
GCGCGGGGTGCATGTGCCGGTCGTGCGCGGCGGTGGCCGTGGCGGACTGCGTGGCGCTGGCGTGCTGCCCCTGCGCGGTC
GTCAGCCTGCTCGGCCTGGCGCTCGTCAGGGCGCCCCTCGCCGTCGGCAGGCTGGTGATCAGGGCCAGGCGGAGGCGGCG
GGCGCTGCTGCGCGGCAAGCGGGTGCCCGACGTGGCCGCCGCCGCGGCTCTCCCGGCGCCGGGCGACGA------CGACC
GCGAGAAGGGCGCGGTGAAGGAGGGCGGCGTCGGCGGCGTGCAGACCACGGCGACGAGTA---CGGGCGGCGAGGTGG--
-------GAGTCGGCGATGATCACGAGGCGGAGCTGGCGTGGCTGGAGGAGATGTACCGGACGGGGCGCTGGGGCTTCGG
CCGCGTCTCCTTCTCGGCCAAAACCCCGTGAGCCGC----GCGCGCCGCCCGATCCAGCGCCTGCATGTCAGCCGGGCGG
CGCGTGCACGGCGGCGGGTCAACTCCAGAGGTCTTGTCGTAGCGCAGTAGCAGTGACTAGTGAGTACGTACGATCAGCCG
GG-------------CCGGCGTGGAGTGAGATGCGCGTCGCGATTTTTTCTCGCGCACGTTCGAATCTCGATTTTATTCA
GAGCTGATTAGAATTGACATGTTCCCTTC-ATTTGCCTA---------CTGATTAGAAGCGTGCGAATCTGAACTGCGAG
CACGTGTTGGCTTCGTTTATCATGGAATCGACATCATGTTCCATATCTATACTTCTTACATTTTCCTTTGGCCTTTTGCC
AATCTATA----------CTTCTCG--------------TTTTATTTCCACTTGTTTTTTT---CTTTTTTGCTACCAGT
TATGGTTCTCT---TACTTTCTATCTGGAG-AAAAAGTATTGATATGGTCCTTCGCGAAAATAG--AAAAAGGAAATGTT
GATGATAACTCGTAAAAGGAAGAATACAAATTGCTTTGTTTTTGCTAAAT------TTATACATCTAACGTTAGGTTTTA
AGCAATTCGGAGCGAACGCCGCGTTGGCCGTCAGATGGAGCACACGTCTAAATGTGTTATAAATATTGCACATCAAAGTT
CCAAGTCATTGATCGTACGCGGAGATTCATGTGGATATTTTCCTTTTTCCTTCTTCTTTTTCTTCTTACGCTTGATTGAA
TGACTTGGATGTGTAATAACTAGAAAACCCTTACTTAATTCCTCTTATCCTATTGGGACTTTCCCCACTCGCCCATTCAC
TCAACCCACTGTCACCCGACTGGTCGCCACTCCGACCCAGCCTGGCTGCCGCCACCGGCGGGCATCCGCCATGGCCTCCC
CCTACTCCCCTTCTCCTAGCCAGATTGATCAATGGCATTCTTTCTAGGGCAAAATTATCTCTGTAACATGGCAAGTTTGA
CAAAAAA-----TAATGATCACACGGTGAATTAACAAACATTATGTTTCCAAAACACATGGTAATTTGAAGTATGTAATT
GCCAGACGACATTTTTACGATTACAATTGTCTCATGTGTCCACGGCTAATTCCTAAATTTGTGATCCTTTCAAAGGATAA
AGTCCCTAATATTGTGATCTTTTTTT-----AAAGAACACGATTTGTAAATCTGCCTTGTCCCAGTACAAACATTCAAAA
GTTGAAATGTT-TTAA--AAAACAATTTTCTTA-TTTCTTTCATGTGCAATTTTATTATAGGTACCATGGCAAA------
----------------TTCATTAATTATACCATGACAACTTTTCCAATTAAACTATGGCAGTTTTGTGGCAACTACCATG
GCA---
>chr1D_44
-------------------------------------------TCCCGACTTGGTTAGTAAATTTTGATTGTTGGTAAAC
TAAAACAAAAAGGAGTTCAGAAATCAGAGCCACCCAGCATGGCCATCCTGTCCATCATTGCACACTTGGCATCTTCTGAT
CAATGTACTACTAC-------TCTGAACCTGTTCTTCACTC-----TGAAGCCGCATGCAGG-CCCCATGCTCTGCACCC
CCCACACACTGG---CAAATCTCTCAGCCTTGGGCCTTGGCGATGCGACGTCCTGGAACTGGAAGCGAAGGAAATA-GTA
CGGACAAGAGGATCAGACAGGCGATCGGGGCCGTGTTGGCAGCTACAGTTGGCGCTCTGAATCCTGGCGTGCCGGCACGG
CGGCAGGCCCGGCGACGCACGGCCGCTTGGCCCCAAAACGGCAGGGCCCTTAACTCCACCCACGGGCCCCCC-GGAAGCG
TGGGAGGATAAAAAGGCACGCAGGGGTTGCAGGTTGCAGTTTTGGAGCACTGTAGCTACCCGTCCTCGCGAAATCGAACG
C---------------TATCACCCCTCGGTGTATCTTGTACCCGCGCCCAAGTATGGCCCG-CCTGTGCGTGCGTACGT-
--ATCATCATCAAAGTTTTTACCGCACGCCCACGATCGAGAGGGGGGTGAATCTCTTGGATGCGTCGCCTTCTCGCTGCG
CGCTTTGATCTGTT------TGCAGGGGAGCGGTGAGCCTGACAGACGTGGGAGTGAATTGCTGGCCGTTTTTCACAGTT
TTGGTTGC---------GAGGAGAGAAAGCTCTC---CTTTTACTGGGCGCACGCGGATCACCCGTCCCGT-----CCAA
CTGTTTACCCGAACCCC---ACCTACAATCTACAATGTGCGCGCTCTCGTGT---------GCCATTTCCTCCGTTGCCG
GCCGCTGCGCTGCGGTTCCCCAGGCTAACAGCTACTACTAGCTGAGAGCTGACTGA---------TCACAAACACCTTTG
CTTGGCTCCGTCTGACGGACCGTCTGCCTGCGGTCGATGATTGGCGGGGCGGGGCGGCAGCGGCAGCGGCATGACGGTGC
GGTGGCGCGGCCGCGACGCAGGTTTGAAGTCGCTGGTGGCGAGGAGGAGGGAGGGGAGGCCACCAC---------GGCGA
GCGCGGGGTGCATGTGCCGGTCGTGCGCGGCGGTGGCGGTGGCGGACTGCGTCGCGCTGGCGTGCTGCCCCTGCGCGGTG
GTCAGCCTGCTCGGCCTCGCGCTCGTCAGGGCGCCCCTTGCCGTCGGCAGGCTGTTGATCAGGGCCAGGCGGAGGCGGCG
CGCGCTGCTGCGCGGCAAGCGGGTGCGCTACGTGGCCGCCCCCGCCGC---CCCGGCGCCGAGCGACAACGGCGGCATCC
ACGACAAGGTCGCCGAGAAGGTGGAAGGCATCCGCGGCGGCGTGGATACGACGTCAACGACGGCGGACGGCGAGCTGG--
-------GAGGCGTCGATGATCACGAGGCGGAGCTGGCGTGGCTGGAGGAGATGTACCGGACGGGGCGCTGGGGCTTCGG
CCGCGTCTCCTTCTCGGCCAAAACCCCGTGAGCCGCGCGCGCGCGCCGCCCGATCCAGCGCCTGCATGCCAGCCG-----
-----GCACGGCGGCGGGTCAACCTCGGAGTAGTT----------AGCAGTACTGGTAGTTCAGTGTGTACGGTCTGCCC
GGTGCACGCACCGCGCCGGCGTGGACAGGGATGCGCGTCGCGATTTTTTCTCGCGCACGTTCGAATCTCGATTT-ATTCA
GAGCTGATTAGAATTGACATGTTATCTTC-ATTTGCCTACTCCTAAGTA-------AAGCGTGCGAATCTGAACTGCGAG
CACGTGTTGGCTTCGTTTGTCATGGAATCCACATCATGTTCCCTATCTATACTTCTTACATCTTCCTTTGGCATTTTGCC
TATCTATACTTCTTACATCTTCTCG--------------TTTTATTTTCACTTGTTTTTTTTTTGTTTTTTGCTGCCCGT
TATGGTTCTCA---TACTTTCTATCCGTAGAAAAAAGTAATGATATGGTCCCTAGCGAAAAAAATCAAAAATGAAATGCT
CATGGTAACTCTTAAAAGGAAGAATACAAATTGCTTTTGTGATTTGGTAAATGTTGTTATACATCTTACTTTATTTTTTA
AGCAATTTGGAGCGAA-----CGTTGGCCCTCGAATGAAGCACATGTATCTTGGAGC------------------AAGGG
CCACGTCAGTTTTCGGAGGCGTTCGCTCCAATCGGGCGAACGCG------------------------------------
--------------------------------------TTCCCCTTATCCTATGGGG-CTTTCCTCACTCGCTGATTCAC
TCAACCTATCATCACCTGA----------------------CTGGCCGCCGCCGCCAGCGGGCCTCCACCATTGCCGCCC
C-TGCTCCCCTTCTCCTAGGCAGATTGATCAATGGCATTCTTTGTAGGAAATTTTTATCTCTATAACATGGCAAGTTTGA
ATAATATGTTTTTAACGGTCACATGGCAAATTAAG-AACATTATGTTTCCAGAA-ACATGGCAAACTGAAATATGTAATG
GTCACACGGCATTTTTACGATTACACTTGTCTCATGTGTCCACGGCAAATTCCTAAATTTGTGATCCTCTCAAAGGAAAA
TTCCCTAACTTTTCCATTTAAAA-----AAACAAGAACATGATTTGTAAATCTACCTCGTCCCGTTACAAACGTTCAAAA
ATTGAAATATT-TTTTGGAAAACTATTTTCCTATTTTTTTTCATGTGCAGTTTTATTATAGTTACCATGGCAAT------
----------------TTTTT-----------------------CAATTAGACCAT------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---S-S-------S------------
--S-------S----------------S-------------S--------------------------------------
--------------SSSSSSS--------------------SSSSS------------------------------S---
--SS-S---SSS--------------------------------------------S-------------------S---
----------------------------------------------------------------S---------------
---------------------------S------S-------------------------------------S-------
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-SSSSSSSSSSSSSSS---------------------------------------------S-----------S-----S
SS---------------------------------------------------------------S--------------
------------S--------------------S-----------------------------S----------------
-S--S---SSSSSSSSS---S-S---S-------------------------------------------SSSSSS----
----------------------------------------------------SSSSSSSSS-------------------
----------S--------------------------SSS-SSSSSSSSSS-SSSSSSSSSSSSS---------------
--------------------------S-----S-------------------------S--------------S------
------------------------------------------------------------------SSSSSSSSS-----
------------SS--------------------------------------------S---------------------
-----------------------------------S--------------------------------------------
--------------------S--------------------S--------------------------S---S----S--
------------------------S--S-------SS----------S-S--------------------------S-SS
SSSSSSS---S---------------------------------------------------------------------
----------------------------------------S----S------S--S------S-----S-------S---
-----------------------------SS----S-S-S---SSS----------S-----------------------
------S-----------------------------------S-------------------------------------
------S----------------------S---------SS----SSS--S-------------------S-----S---
-------------------------------------------SS-SSSS------------------------------
------------------------SSSSSSSSSSSSSSS---S-----------------S---------S---------
-----------SSS-----------------------S---------------S--------S-SS-SSSSSSSSS-S--
SSSSSSSS------------------------------------------------------------------------
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------S--------S--------------------------------------------------------S-------
-----S---------------------S------S---------------------------------------------
--S----S--------S-----S------------------SSS-S--------------S-------------------
-------------------------------S------------------------------------------------
-----S---SS---SS----------SS-----------S---------S------------SS-------S------S-
S----------S----S---S---------------------S-S-----------------------------SSSSSS
SSSSSSSSSSSSSSSS------------------------------------------S------S---S----------
---SSS
>forward_570
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----------------------------------------------------------------------AAATCGGACG
CTATCACCCC----------------------------------------------------------------------
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>reverse_2156
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---------------------------------------------------------------------------TTTCT
TGACTGGCCGCTGAT-----------------------------------------------------------------
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