>input_sequence_77135
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-------------------------------ATGGAGGTGAGCGTTCGTGCGGACCAACCGTGCGTCCATGCAAAGGATC
GGCACTTCCCCGTGGTTTGTACTTTGTAGCTCACCTGGTTTTGG-CTTTGCTTTGCTTTTGCAGAAGGCGAGGCGGCGGC
AGGTGCCGGCGTTCGGGGAGTGGAACTACTGCTACTACTACGACGAGCCGCCGGCCGCGGTGGCGGTGGCCGTGGCGGCC
GAGTGCTACGCGCCGGAGCCGGAGGCCTGCAGCGACGTGTGGTTCAGGTACTCGCCGCCTCCGCGTAAGCCCACGCCCAA
GAAGACGCGGAGGCCGGACAAGGGCGACGTGGCCCGTCGGGAGAAGGGGGAGAGGCGCGGTGCCAGTGCCCTGGACGCTG
CCGCCGGCCTGCCGCGCGCCACAGCCAAGGCCGGCTCCAGGGTGGTGCGCCCGGTCGACGAGGACCTGTACCAGGTGCCT
CCGCCGGAGTTCACCTCCCGCCGCCCAAGGCGGAAGAGGAGCCTGCTGATGGGTTGCCTGGGCCTCAACTCATGCGTCGC
CTGA----------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G267200
ATTCCCATAATTTAAATATTATTTTATTTTTTCTTAAACGCTCATATAAAAGCACATATGCTCGCACTTATGAATGTACA
TCCGTACCC-TATGAACAACTCCAGAAGACGGAGCTGGCATCGCGTCTTAAGATTGACGAAGTAATCACAGACACCTCGT
AGTCGGGGAATAAAGAATGAACAAAGATGGCATGTGTAAACTCAATCCTTTACCCCTTTTTTGCGGGAAATCCTTTACTG
TGGTTAA-AAAAAGATTTGGCACTGCTCAAAAGAAAAAGAAAAATAAGATTTGGTAATTCACCTGCCAACTTTACCATCC
AACCCCATGCTGTCTTGTGCTATAGAAAT-------------------TTTTTCTAGCCCGTGGACTTTTGCTCATACCC
CATCGTTTTGTGTAGATGCAGGGGTAGGGGTACTGCC------TAGCAGTAGAGCGTAGCGTTGAAACGCGTTACTATTA
TTTTACTCGGTAATCAACCCGCAATGATGCGGAAATAACACGGGCGCGCGACAAGATGGCTGCATGTCAGCTGGAACCCC
GGTACGACGTGCAGCAGCCCCATACCTAGGAGTAATAGCCCTCCCTCTCCCGCGGTCAAACTCAAACCAGGACCACGCCG
GCCAGCGGCCA-----------------CTCTCTGCGTCT------CTGCAGCCTCCTCCAAGCCTACCGAGGCTAGCTC
CTGGCCTTCTACAGTGAGCTACTGCCGCTCTGAAAAGAGGCCTTCCATGCTGCCCCGCCCCA-------TCTCTCCCTCT
CTCTACCCCTCTCTCTCTACCCTCTCGACATTGCCGGC-------------CTCTTCAATGCTTTCCGGCCGGTACTGCC
GCGCGAGCTGCTCCCTCCCATTCCCGCTATAAAACACGCGCGTGCGTCCAGGCCATTGGAGGCTCCAACCCATTCTGTTT
AGCCGCTAGCTGGTGCTG-GTACCGCTCGCCCCACTGACCCCAGCCCGCTTCTCCTTCTTCTCCACCCCATTCTGTCTGC
CCCTGTGTCGTGTGCTGCCGGCGTGAACCGGATGGAGGTGAGCGTTCGTGCGGACCAACCGTGCGTCCATGCAAAGGATC
GGCACTTCCCCGTGGTTTGTACTTTGTAGCTCACCTGGTTTTGG-CTTTGCTTTGCTTTTGCAGAAGGCGAGGCGGCGGC
AGGTGCCGGCGTTCGGGGAGTGGAACTACTGCTACTACTACGACGAGCCGCCGGCCGCGGTGGCGGTGGCCGTGGCGGCC
GAGTGCTACGCGCCGGAGCCGGAGGCCTGCAGCGACGTGTGGTTCAGGTACTCGCCGCCTCCGCGTAAGCCCACGCCCAA
GAAGACGCGGAGGCCGGACAAGGGCGACGTGGCCCGTCGGGAGAAGGGGGAGAGGCGCGGTGCCAGTGCCCTGGACGCTG
CCGCCGGCCTGCCGCGCGCCACAGCCAAGGCCGGCTCCAGGGTGGTGCGCCCGGTCGACGAGGACCTGTACCAGGTGCCT
CCGCCGGAGTTCACCTCCCGCCGCCCAAGGCGGAAGAGGAGCCTGCTGATGGGTTGCCTGGGCCTCAACTCATGCGTCGC
CTGAACCTGTGTGCCAATGGGATGC----TGCGCGGTCTATT---CTAGAGTGGTAGTGGTAGTGTTCACTAGATTGAGT
GAGTGCTGGTTCTTTCTTGTTGTGTGTTATGTAGTTTTGATCTCTTGGGCAGTTGGGCTA----GTGATCACTTGTAATG
CTCTCGAGCTGTTTATTCCACCATTAGTTTGTATACGCAGGTCTCATGTAGTCATGTGTTAAGCTTGGTCA----GTGAG
TCGATGGTGTAGATCTAGGCATGTTTGGATCGTGTCCAAAATGTACCCTGCTCCAATATTTTGGCCAGGATCC-AAAAAT
AGGTACCAGTGTTGCCTTACTCATGTCATGTGCAACCAACACCTCAGCCAAAAAATTAGCTAGCTGATATTTTGGCGGGG
CAATCTAGGGCATAAACCAAACACACGTCGAATCCAATGCTTCTCCCTTTCTTCTCTTC----GTCGCAATCTCGGTTGA
CGTACATGTTTCTTGCGCTGTTCG-----TCGCAGGCAACCTGGAACTAAAGAAAACGGGTTAGCAATCCATATTGAGAG
GAAAATAACCAGCCAAT---AATTTGAACGTCACACTACCTAGTACAAACAACTACTAATAG-ATGTCTTAGTGACGGCC
TAGCACAGCTCCATGAGATTTCACCG---------------------------------TTTTGTTTTCTTGTTGGATGT
TGGTTACTGCAACAACTCTTGACC-------------------------------CATTGATGTGTTGTTAATTCAAAGC
CATGTTCCACGA---------------TCGTTGCAAAAACGTTCTTCTGTAGAAAAAAGATGCACAATATTCACGGTACG
GAAAAAAT-----GCACTGTCTTCATTTGAACTGGCCAATCTGATCTTGATGAGGGAATTTAAGCAGGCGACGATAGCAG
AGCTGAAACAACATGGCTCCACTCCAAAGCAGAAGCATCTCTCCGGGTGAATCTTATTAATTCTGGGCTGTGCAGCATTG
CAGCTCGCTATAAGTA----CTATTACACCGGTGTAGTACTAGTACTACCGGTCGATCGCACGACGTGCAACGAATTAAA
C
>chr4B_2
-TTCCCATAATTTAAATATTATTTTCTGTTTTCTTAAACGCTCATATAAACGCACATATGCTCGCACTTATGAATGTACA
CCCGTACCCGTATGAGCGCCTCTAAAAGACGGAGCTGGCATTGCGTCTTGAGATTGACGAAGTAATTACAAACGCCTCAT
AATCAGG-----------GAACAAAGATGGCATGTGTAAACTCAATCCTTTACT-CTTTTTTGCGGGAAATCCTTTACTG
TGGTTAA-AAAAA-ATGTGGCACTGCTCAAAAGAAAAAGAAAAATAAGATTTGGTAATTCACTTGCCAACTTTACCATCC
AACCTCATGCTGTCTTGTCCTATAGAATT-------------------TTTTTCTAGCCCGTGGACTTTTTCTCATGCCC
CATCGTTTTGTGTAGATGCAGGGGTAGGGGT---GCC------TAGCAGTAGAGCGTAGCGTTGAAACGCGT----ATTA
TTTTACTCGGTAATCAGCCCGCAATGATGCGGAAATAACACGGGCGCGCGACAAGATGGCTGCATGTCAGCTGGAACCCC
GGTACGACGTGCAGCAGCCCCATACCTAGGAGTAATAGCCCTCCCTCTCCCGCGGTCAAACTCAAACCAGGACCACGCCG
GCCAGCGGCCA-----------------CTGCCTGCGTCT------CTGCAGCCTCCTCCAAGCCTACCGAGGCTAGCTC
CTGGCCTTCTACAGTGAGCTACTGCCGCTTTGAAAAGAGGCCTTCCATGCTGCCCCGCCCCA-------TCTCTCCCTCT
CTCTCTCC-----------CCCTCTCGACATTGCCGGC-------------CTCTTCAATGCTTTCCGGCTGGTACTGCC
GCGCTAGCTGCTCCCTCCCATTCCCGCTATAAAACACGC----GCGTCCAGGCCATTGGAGGCTCCAACCCATTCTGTTT
AGCCGCTAGCTGGTGGTG-GTACCGCTCGCCCCACTGACCCCAGCTCCGCTTCTCTTCTTCTCCACCCCATTCTGTCTGC
CCCTGTGTCGTGTGCTGCCGGCGTGAACCGGATGGAGGTGAGCGTTCGTGCGAACCAACCGTGCGCCCATGC-AAGGATC
GCCACTTCCCCGTGGACTGTACTTCGTAGCTGACCTGG-TTTGG-CTTTGCTTTGCTTCTGCAGAAGGCGAGGCGGCGGC
AGGTGCCGGCGTTCGGGGAGTGGAACTACTGCTACTACTACGACGAGCCGCCGGCCGCGGTGGCGGTGGCCGTGGCGGCC
GAGTGCTACGCGCCGGAGCCGGAGGCCTGCAGCGACGTGTGGTTCAGGTACTCGCCGCCACCGCGCAAGCCGACGCCCAA
GAAGACGCGGAGGCCGGACCAGGGCGACGTCGCCCGTCGGGAGAAGGGGGAGAGGCGCGGTGCCAGGGCCCTGGACGCTG
CCGCCGGCCTGCCGCGCGCCACAGCCAAAGCCGGCTCTAGGGTGGTGCGCCCGGTCGACGAGGACCTGTACCAGGTGCCT
CCGCCGGAGTTCACGTCCCGCCGCCCAAGGCGGAAGAGGAGCCTGCTGATGGGTTGCCTGGGCCTCAACTCATGCGTCGC
CTGAACCTGTGTGCCAATGGGATGC----TGCGCGTTCTATT---CTAGAGTGGTAGTGGTAGTGTTCACTAGATTGAGC
GAGTGCTGGTTCTTTCTTGTTGTGTGTTATGTAGTTTTGATCTCTTGGGCAGTTGGGCTA----GTGATCACTTGTAATG
CTCTCGAGGTGTTTAATCCACCATGAGTTTGTGTACGCAGGTCTCATGTGTTAGGTTGGC--------TCA----GTGAG
TTGACGGTGTAGATCTAGGCATGTTTGGATCGTGTCCAAAATGTACCCTACTCCAATATTTTGGCCAGGATCCAAAAAAT
AGGTACCAGTGTTGCCTTACTCATGTCATGTGCAACAAACACTTCAGCCAAAAAATTAGCTAGCTGATATTTTGGCTGGG
CAATCTTGGGCAACAACCAAACACACATCGAATCCAATGCTTCTCCCTTTCTTCTCTTC----GTCACAATCTCGGTAGA
CATACATGTTTCTTGCGCTGTTCG-----TCGCAAGCAACCTGGAACTAAAGAAAAGGGGGGAAG---------------
-------------------------------------------------------------CAATCCATCATTGACAGCT
TAGCACAGCTCAATGAGATTTCATCATCTTATAAACATAGCCAAGTTCGTCTGCACTGTTTTGTTTCCCTTGTTGGATGC
TGGTTATTGCAACATTCTTGACCCTTTTTTTGCGAGGAACAATTCTTGACCCATGCATTGATGTGTTGTTAATTCAAAGT
CAGGTTCCTCGAC---------------CGTTGCAAAAATGTTCTTCTGTAGAAAAAAGATGCACAATCTTCACGGTAAA
AAAAGG---------------------TGCACTGGCCAATCTGATCTTGATGAGGGAATTTAAGCAGGCGACGATAGCAG
AGCTGAAACAACATGGCCCCACTCCAAGGCAGAAGCATCTCTCCGGGTGAAATC--TTAATTCTGGGCTGTGCAGCATTG
CAGCTCGCTATAAGTAAGTACTATTACACCGGTGTAGTACTA------CCGATCGATCGCGCGACGTGCAACGAATTAAA
C
>chr4A_232
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------------------------------------------------------------------------CTTTACAG
CGGTTAAGAAAAG-ATTTGGCACTGTTCAAAAGAAAAACAAAA----GATTTTGCAATTCACTTGCCAACTTTATCATCC
AACCCCATGCTGTCTTGTGGTATACTCCATCGTTTTGTGTAGTTGAAATTCTTCTAGCCCGTGGACTTTTGCTCATACCC
CATCGTTTTGTGTAGATGCAGGGGTAGGGGTACTGCTGCCTAGTAGCAGTAGAGCGTAGCGTTGAAACGCGC----ATTA
TTTTACTCGCTAATCAGCCCGCAATGATGCGGAAATAACACGGGCGCGCGACAAGATGGCTGCATGTCAGCTGGAACCCC
GGTACGACGTGCAGCAGCCCCATACCTAGGAGTAATACCCCTCCCCGG-------------TCAAACCAGGACCACGCCG
GCCGGCCGGCCGGCCACCCCCTCTCTCTCTCTCTGCGTCCCTGCAACTGCAGCGTCCTCCAAGCCTACCGCGGCCAGCCC
CTAGCCTTCTACAGTGAGCCACTGCCGCTCTGAAAAGAGGCCTTCCATGCTGCCCCGCCACGCCCCCTCTCTCCCTCTCT
CTCTCTCT-----------CCCTCTCGACATTGCCGGCCCCAGAGCTCGGCCTCTTCAATGCTTTCCGGCCGCTACTGCC
GCGCGAGCTGCCCCCTCCCGTTCCCGCTATAAAACACGC----GCGTCCAGGCCATTGGAGGCTCCACCCCATTCTGTTT
AGCCGCTAGCTGGTGGCTAGTACCGCTCGCCCCACTGACCCCAGCTCGCTTCTCCTTCTTCCCCACCCCATTATGTCTGC
CCCTGTGTCGTGTGCTGCCGGCGTGGACCGGATGGAGGTAAGCGTTCATGCG-------------CCCATGC-AAGGATC
GGCACTTCCCCGTGGTCTGTACTTTGTAGCTCACCTGG-TTTTGCCTTTGCTTTGCTTCTGCAGAAGGCGAGGCGGCGGC
AGGTGCCGGCGTTCGGGGAGTGGAACTACTGCTACTACTACGACGAGCCGCCGGCCGCGGCGGCGGTGGCCGTGGCGGCC
GAGTGCTACGCGCCGGAGCCGGAGGCCTGCAGCGACGTGTGGTTCAGGTACTCGCCGCCTCCGCGCAAGCCCACGCCCAA
GAAGACGCGGAGGCCGGACCAGGGCGACGTGGCCCGTCGGGAGAAGGGGGAGAGGCGCGGTGCCAGGGCGCTGGACGCTG
CCGGCAGCGTGCCGCGCGCCACGGCCAAGGCCGGCTCCAGGGTGGTGCGCCCGGTCGACGAGGACCTGTACCAGGTGCCT
CCGCCGGAGTTCACCTCCCGCCGGCCGAGGCGGAAGAGGAGCCTGCTGATGGGATGCCTGGGCCTCAACTCATGCGTCGC
CTGAACCTGTGTGCCAATGGGATGCGAGCTGCGCGTTCTATTCTACTAGAGTGGTAGTGGTAGTGTTCACTAGATTGAGT
GAGTGCTGGTTCTTTCTTGTTGTGTGTTATGTAGTTTTGATCTCTTGGGCAGTTGGGCTAGTGAGTGATCACTTGTAATG
CTCTCGAGCTGTTTATTCCACCTTGAGTTTGTGTACGCAGGTCTCATGTGTTAGGTTGGG--------TCAGTCAGTGAG
TTGATGGTGTAGATCTAGGCATGTTTGGATCGTGTCCAAAATGTACCCCACTTCAATATTTTGGCCAGGATCCAA-AAAT
AGGTACCAGTGTTGCCTTACTCATGTCATGTGCAACCAGCACCTCAGCCAAAAAATTAGCTAGCTGATATTTTGGCGGGG
CAATCTAGGGCATAAACCAAACACGCATCGAATCCAATGCTTCTCCCTTCCTTCTCTTCCCTCGTCACAATCTCGGTGGA
CGTACATGCTTTTCGGGCTGTTCTGTTCATCACAAGCAACCTGGAACTAAAGAAAGGGGC--AGCAATCCATTATTGAGA
GGAAATAACCCACCAATTTCAATTTGAACGTCATACTACCTG---CAAACAACTACAGCTACAATGCCTTACTGACGGCC
TAGCACAGCTCTATGAGATTC--TCATCTTATAAACATAGCCAAGTTCGTCTGCACAGTTTTGTCTCTCTTCTTGTATGT
TGGACATTGTAATTCATGCCCCGGCCCGTTGAT----------------------------TGTTCTGTCAATCCAAACT
CGAGTCCGTATTCGGCCTTCTTCAGCCTCGTTGTAAAAAAGTTCTTATGTGCTCTTGCGCCACTTTGCTCCGAAAGATAA
AGATGAGATGCACGCACAATCTTCACTTGAACTGGCCAAACTGATCTTAG---GGGAATTTAACCAAGGTACGATGGCAG
AGCTGAAACAACATGGCTCCACTCCAAAGCGGAAGCATCTCT--------------------------------------
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>SNPs
S------------------------S-S----------------------S-----------------------------
S--------------S-SS---S-S----------------S-------S----------------S---S--S----S-
-S--S--SSSSSSSSSSS-----------------------------------SS-------------------------
-------------S------------------------------------------------S-----------------
---------------------------S----------------------------------------------------
------------------------------------------------------------------------SSSS----
----------------S---------------------------------------------------------------
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----SS--SSSSSSSSSSS-------------------------------------------------------------
---------------------------------------SSSS-------------------------------------
---------------S-----------------------------S----------------------------------
----------------------------------------------------S------------S------S-------
----------------S---------------------S-------------------S---------------------
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-----------------------------------------------------------------S--------------
-------------------S----------------------------------------------S-------------
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-----------------------------------S--------------------------------------------
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------------------------S-------S----------------SS-SSSS--SSSSSSSSSS------------
-S-----------------------------------------------S------------------------------
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--------------------------S---------------------------------------S----------S--
----------------------------------S---------------------S---SS----------SS-SSSSS
-S--------SS---------------------S-------SSSS-----------SSS--S----S----S--------
-----------S-----------S-S------------------------------------SS--S-------------
------S-------SS-S-SSS---------------------------------------------------------S
--S-----S------------------------------S----------------------------S---------SS
S---S-SS---------SS------S------------------------------------------------------
---------------------------------------------------SSSSS------------------------
------------------------------------------SSSSSS---S--------S-------------------
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>forward_122
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----------------------CAGAAGACGGAGCTGGCATC--------------------------------------
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>reverse_1826
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-----------------------------------------------------------------TGGTCAGTGAGTCGA
TGGTG---------------------------------------------------------------------------
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