>input_sequence_77131
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-------ATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCAC
GGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATT
GAGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTATCGATCTGTTTGCTAGGAATGTCTAATAACCATAGCCTT-
----TTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGACAGGTCGATAGAAACTA-
---------CATTCTGTGGTTTAACTAACTCTTTTCTTGCATCTGACTGGCAGGTGAATTATGGCAACTTCATGCATGGA
TTGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACT
TGTTGATGTATCTCGCACTGCATTTCCGGGGAACAGACCACCTACCCAAAAGGAAGGTCTAGCAGCTATTCTGTGA----
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>chr3A_1_TraesCS3A01G280300
GACGCTTCGGCGGGAGGGTATGATTTCGCACAATTTTTCTTATTGCCAACGACCCCTTTTCCCTCCGCAA-------TCA
CGAAGTGTAATAAATTCCTGTTTTTTCCCTAAAGGGCTAAAATTGTCCGGCTGCAGTTGATGTTATTCCGCATCTGACGA
GATTA--------AGGCCGCAAGGCCGTTGCGTCCGCCATCCAGCCGCCTGTAGAACCCATCCCGTAACCGAGCGAAATC
ACCCCCTTAGTCATCTTGTGCCTGCTTCGCCTGTAGCCGTCCATGTATGTTTCGATGTCCTGCTACAGGGCGGTAGCAAT
GGTTAACATACGATTTCAAACTTTTAGTATATTTTCGGGAATTGTGTGAATTATTGAATTTCCTGAAACATTTCCCCCAG
TTTCTTGAGTTGCTTTATGTTACA--------------------------------------------------------
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-----------------------ATATGAAAATCCCTGCCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAG
CGACATTCAGTCCATGTGGGGATTGTGTGGAAGGATGGTTCCCCTAGTGGGTTGTTTCCCCAACAACTAAACAAGCCCCA
ACAGGTCCCCATTCCCTTCATAGTGGTGGATAATGGAGGAGGGCGATGACATCCAGGGCGGGGATGTTCTTTCAACTCCT
CACCGGGATGTTCATGTTGATTAAAAGTTCAGGGCCATATATTGTACGAATAGCCTGTTGTTTATTAAAATAAAAGGAGT
ATCATATGACAGCATATGCTACTATTTGCAGAGCAAGCAAAGAGAAAATGTTCTGAATTTTCGGTCGGTACACGGTGTTT
CTGTGTGGAGCTAACAGTGCACATGAAATTTCACTATCATATGTTTCTAGTTGTCGCTCAAACGGATGTATCTAGCACTG
AAATATGTCTAGATGCATCCATTTCAGCGACAACTAACATGGGACGGAGGGAG---------------------TATTAG
C-----------TAACAAGTTTTAAAAATCTTTTGTTTCAGATTGTAGGAAGGG-GTCAAAGCATCTAGGAGCCTGTTAG
CTACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCAC
GGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATT
GAGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTATCGATCTGTTTGCTAGGAATGTCTAATAACCATAGCCTT-
----TTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGACAGGTCGATAGAAACTA-
---------CATTCTGTGGTTTAACTAACTCTTTTCTTGCATCTGACTGGCAGGTGAATTATGGCAACTTCATGCATGGA
TTGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACT
TGTTGATGTATCTCGCACTGCATTTCCGGGGAACAGACCACCTACCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACA
GCTTGTGCAATAAATT--ACTGCTGTCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCAC
CAATATCTTGTATCCTGGAGGTGACTCATGTAATCTCCTTTTGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTT
TTCAATGAATTATTGCTCATTTGGCCCCTTTCTGTTGGTCTTATAGAGAGAGTCCCCTTTCTGTTGGTCTTATAGAGAGA
GTTCTCTGTGTTACAAGTTATCAATGTCGATTGTTACTTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTGC
TCATCTATAATTGTGACCAGTAAATACCCCT-CTTCTAAATGCGTACCTGTAAAGTGCTTGTGTCTAGAGAGCAAAACCA
AGGGAGTGTTGCACGTCTCTTCATTTTTCATCGCAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGA
ATCGTCTGGCTCGATCCCAGTAAGGCCTTGTTTGTTTCAGCTTCAACTTCTGTCAAATCAGCTGTGGATTCGCTTCACTC
AGAATCAGCTTTGCCACTGAAGTACACCGGGACGTGCTTCAAGAAAATAGCCGTTTGTTTC--AGATTAAGCTTTGCCCT
GAAGCTGAAACAAACAAAGCCTAAGTCCAATGTCCTTGTTACTCTTGGTCAGTAACAGACCTCTTCTGATTATTTACACT
AAAAAGGATATCCTCTGATTACACTTCCCATACCAGCCATTCATTGGTGTATAGAAGAGAACTAGCAGTACATGTTTT--
----TGATCAGATGGGGTGCTCAGAACCTCAGTTCACTTGGCGTGGAGTAGTGCATATGCTAAAACAGAAATTCTTCTCC
TGAAAATGAAGGAACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGCTAATGTTCCCAAGGCCCATCTGACAAT
GGTCA--TACATGCACATGTGATGTGAGATACATATATATTATCTATAA
>chr3B_1
GACGCTTCGGCGGGAAGGTATGATTTCGCACAATTTT-CTTATTGCCAACGATCCCTTTTCCCTCCGCA-------CTCA
CGAAGTGTAGTAAATTCCTTTTTTATCATAAAGGGAGAAAATTTGTCCAGTTGCAGTTGATGTTAATCCACATCTGACGA
GAACCCATCCCGTAGGTCGCAAGGCCGTTGCATCGGCCATCCCGCCGCTGGTAGAACCCATCCCGTAGCCGAGCGAAACT
ACCCCCTT-------------------CGCTTGTAG-CATCCATGTATGTTGATATGTCCTGCTACAGGGCGGTAGCTAT
GCGTACCATACGATTTCAGACTTTTAGGATATTTTCGGGAATTGTGTGAATTATTGAATTTCCCTGAGACATTTT-CCAG
TTTCTTGAGTTGTTTTATACTCCCTCTGTGTCTAAATATAAGCCCTTTTAGATATTCCAATACGGAAGACATATAGGGCG
GAGCAAAGTGAGTGAATCTACACTCTAAAATATGTCTATGTATATCCGTATGTAGTTCATATTGAAATCTTTAAAAGGTC
TTATATTTAGAAATGGAGGTAGTATATGAAAATCCCTGTCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAG
CGACATTCAGTCCATGCGGGGATTGTGTGGAAGGATGGTTCCCCTAGTGGGTTGTTTCCCCAACAACCAAACAAGCCCCA
ACGGGTCCCCATTCCCTTGACAGTGGTGGATAACGGAGCACGGCGAGAACATTCTG---------------TCAACTCCT
CACCGGGATGTTCATGTTGAATAAAAGTTCAGGGCCATATATTGTATGAATAGCCTGCTGTTTATTAAAA-----AGAGT
ATCATATGACAGCATATGTTACTATTTGCAGAGCAAACAAAGAG-AAATGTTCTGAATTTTCGGTGGCTACGCAGTGTTT
CTGTGTGGAGCTAACAGTGCACATGAATTTGCGCTATCATATGTTTCCTCTAAGAGTTTTTAGTGTAGTGCAGGGAGCTT
AAGCTGTTAGATCTGTTCTTGATTTTTGTAGTGAAAATCAATACAGAAAACCTTGCTTCTAGTTAAGTACTACTTATTAG
CTAAGAGTTTTTTAAAAGTTATTTAAAATCTTTTGTTTCAGATTGTAGGACGGGAGTCCAAGCATCTAGCAGCTTGTTAG
CTACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCAAAAAATTGCATAAGGATAGCGC
GGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGACAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATT
GAGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTCTCGACCTGTTTGCTAGGAATGTCTAATAACCATAGTCTTT
TTTATTTATTTATGAATAAAAAGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGGCAGGTCGATAGAAAACTA
GCAGCCTTGCATTCTGTGGTTTAAGTAGCTCTTTTCTTGCATCTGACTGCCAGGTGAATTATGGCAACTTCATGCATGGA
TTGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCAGAGCTGTCAATGCACGAGCCATACAGCTTCAAGGCACT
TGTTGATGTATCTAGCACTGCATTTCCGGGGAACAGGCCACCTGCCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACA
GCTTGTCCAATAAAT--CACTGCTGTCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCGC
CAATATCTTGTATCCGGGAGGTGACTCATGTAATCTCTTCTCGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTT
TTCAATGAATTATTGCTCATTTGGCCCCTTTGTGTTGGTCTTATAGAGGGAGTTC-------------------------
--TCTCTGTGTTACAAGTTACTAATGTTGATTGTTAATTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTG-
TCATCTATAATTGTGGCCAGCAAATACCTCTGCTTCTAAATGCATACTTGTAAAGTG--TGTGTTTAGAGAGCGAAACAA
AGGGAATGTTGCACGTCTCTTCA-TTTTCATCACAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGA
ATCTTCCGGCTCAATCCCAGTAAGGCCTTGTTTGTTTCAGCTTCGACTTC------------------------------
---------TTTGCCACTGAAGTACACCGGGACGTGCTTCAAGAAAATACACTGAAGTGGCCTAGATTCAGCTTTGCCCT
GAAGCTGAAACAAACAAGGCCTAAGTCCACTGTCCTTGTTACTCTTGGTCAGTAACAGACCT------------------
-------------------------------ACCAGCCATACATTGGTGTATAGAAGAGAACTAGTAGGAGTAGTACATT
TTACTGATCAGATGGGATGCTCAAAATCTCAGCTCACTTGGCAGGGAGCGTCGCATATGCTAAAACAGATATTCTTCTCC
TGGAAATGAAGGAACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGTCAATGTTCCCAAGAGCCATCTGAGAAT
GATCTCGTACATGCACATGTGATGTGGGATACATATATTGTCTATAA--
>chr3D_1
GACGCTTCGGCGGGAAGGTATGATTTCGCACAATTTTTCTTATTGCCAACGATCCCTTTTCCCTCCGCAGTCCGCACTCA
CGAAGCGTAGTAAATTCCTTTTTCATTATAAAGGGAGAAAAATTGTCCAGCTGCAGTTGATGTTAATCCACATCTGACGA
GAT---------TAGGTCGCAAGGCCGTTGCGTCGGCCATCCCGCCGCTGGTAGAACCCATCCCGTAACCGAGCGAAACT
ACCCCCTT-------------------CGCTTGTAGCCATCCATGTATGTTGATATGTCCTGCTACAGGGCGGTAGCTAT
GCGTACCACACGATTTCAGATTTTTAGGATATTTTCGGGAACTGTGTGAATTATTGAATTTTCCTGAGACATTTT-CCAG
TTTCTTGAGTTGTTTTATATTCCCTCCGTTTCTAAATATAAGTCTTTTTAGATATTCCAATACGGAACACATATAGGGCG
GAGCAAAGTGAGTGAATCTACACTCTAAAGTATGTCTATATATATCCGTATGTAGTTCATATTGAAATCTTTAAAAGGTC
TTATATTTAGAAACGGAGGTAGTATATGAAAATCCACGTCAGTCCAAACGAATTCTCATGGTGGAGGGGATCGAATAGAG
CGACATTCAGTCCATGTGGGGATTGTGTGGAAGGATGGTT----------------------------------------
-------CCCATTCCCTTGACAGTGGTGGATAATGGAGCAGGGCGAGAGCATTCCG---------------TCAACTCAT
CACCGGGATGTTCATGTTGAATAAAAGTTCAGGGCCATATGTTCTATGAATAGCCTGCTGTTTATTAATA-----GGAGC
ATCATATGACAGCATATGTTACTATTTGCAGAGCAAACAAAGAG-AAATGTTCTGAATTTTCGGTGGCTACACAGTATTT
CTGTGTGGAGCTAACAGTGCGCATGAATTTGAGCTATCATATGTTTCGTCGAAGACTTTTTAGTGTAGTGCAGGGAGCTT
AAGCTGTTAGACCTTTTCTTGATTTTTGTAGTGAAAATCAATACAAAAAACCTTGCTTCTAGTTAAGTACTACATATTAG
C-----------TAAAAGTTTTTTAAAATCTTTTGTTTCAGATTGTAGGACAGGAGTCCAAGCATCTAGCAGCTTGTTAG
CTACAAAATGAACAAGGGGAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGAAGGGCGAAAAATTGCATAAGGATAGCAC
GGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGACAGGCGTAACAAGAAGAGAGACATGCGGTCCCTATGGATT
GAGCGCATCAATGCTGGTACACGACTGCATGGGGTATGTCTCGACCTGTTTGCTAGGAATGTCTAATAACCATAGTA-TT
TTTATTTATTTATGAATAA--AGAAAGAAACATCATCTTTTGAATGATTATCTCAAGACAGGCAGGTCGATAGAAGACCA
GCAGCCTTGCATTCTGTGGTTTAAGTAACTCTTTTCTTGCATCTGACTGCCAGGTGAATTATGGCAACTTCATGCATGGA
TTGATGAAGGAGAACATCCAACTGAACAGGAAGGTGCTCTCGGAGCTGTCAATGCATGAGCCATACAGCTTCAAGGCACT
TGTTGATGTATCTCGCACTGCATTTCCGGGGAACAGGCCACCTGCCCAAAAGGAAGGTCTAGCAGCTATTCTGTGAAACA
GCTTGTCCAATAAATCACACTGCTGCCATGACGGTCTTCCGTTTTCCCTTCGTTGCAACTGAAAGTTATTACCAGTCCAC
CAATATCTTGTATTCGGGAGGTGACTCATGTAATCTCTTTTTGCCATTCCCTGTGGTATTCTCTTTAGCAGGAACACCTT
TTCATTGAATTATTGCTCATTTGGCCCCTTTCTGTTGGTCTTATAGAGAGAGG---------------------------
--TCTCTGTGTTACAAGTTACCAATGTTGATTGTTAATTCTGTAGCAATATGATAGAGATCGGTGACCCTTGTGTTGTGC
TCATCTATAATTGTGACCAGTAAACACCCCT-CTTCTAAATGCATACTTGTAAAGTGATTGTGTCTAGAGAGCGAAACAA
AGGGAGTGTTGCACGTCTCTTCA-TTTTCATCGCAAGAGTTAAGAGTGCATGATGTTCAGAATTCTTTTGAAGTTATGGA
ATCTTCTGGCTCGATCCCAGTAAGGCCTTGCTTGTTTCAGCTTCAACTTCTGTCAAATCAGCTGTGGATTCGCTTCACTC
AGAATCAGCTTTGCCACTCAAGGACACCGGGACGTGCTTCAAGAAAATAGCCGTTTGTTTC--AGATTACGCTTTGCCCT
GAAGCTGAAACAAACAAGGCCTAAGTCCAATGTCCTTGTTACTCTTGGTCAGTAACAGACCTCTTCTGATTATTTACACT
AAAAAGGATATCCTCTGATTACACTTCCCATACCAGCCATTCATTGGTGTATAGAAGAGAACTAGCAGTACATGTTTT--
----TGATCAGATGGGGTGCTCAGAATCTCAGCTCACTTGGCATGGAGTAGTGCATATGCTAAAACAGACATTCTTCTCC
TGAAAATG----AACAAATTTCGTGCATTCCTTTGTCCCTTTCTTTACTTTGCTAATGTTCCCAAGACCCATCTGACAAT
GGTCA--TACATGCACATGTGATGTGAGATACATATATTGTCTATAA--
>SNPs
---------------S------------------------------------S----------------S----------
---------S---------S----S--SSS--S--SSS----------S----------------S---S----------
---SS-----------S-----------------S-------S-----SS----------------------------SS
--------SSSSSSSSSSSSSSSSSSS---S-------S------------SSS-----------------------S--
-SS--S------------S--------S-----------------------------------SSS-SSSS--SSS----
------------S-----S--S-S--------------------------------------------------------
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--------------------------------------S-----------------------------------------
-------------------------------------------------------------------S------------
--S---------------S-S-----------------S-------SS----S-S-SSSSSSSSSSSSSSS---------
--------------------S-------------------------S----------S------------SSSSS-----
------------------S-----------------S-------S--------------------S-S-----S------
---------------------------S--S-S--------------SSS-SSSS-S-SSS-SS-SS--SSSSS-SS--S
--SSSSS-SS-SS--SSSSSSS--SSSSS-SSSSS--SSSSSSSS-S-SSSSS---------------------------
---------------S-SS----S--------------------------S-------S----------S---S------
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----------------------------------------S---------------------------------------
---------------------------------------S----S------------------------------S----
-------------------------------------------------------------S--------------SSS-
------------------------S------------------------S------------------------------
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------------------------------------S------S------------------------------------
------S--------S----------------------------------------------------------------
---------------S---------------------S------------------------------------------
-----------------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------S------S--------S-------------------------------------------
-------------------------------------------S---S---------S---------------S----S-
-----------------------S--------------------------------------------------------
---S----------------------------------------------------------------------------
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-----------------S--------------------------------------------------------------
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--------------------------S-----S---------S--------------------------S----------
------------------------------------------------------------------S-------------
--------------------------------------SS-S-S--SSS
>forward_1092
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--------------------------------ACTAACATGGGACGGAGGGA----------------------------
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>reverse_2159
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AGGGAGTGTTGCACGTCT--------------------------------------------------------------
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