>input_sequence_77119
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-----------------------------------------------ATGACGCCTCCGACGGCCACCTCCCTCACCCTC
CTCGTCCTCGCCGCCATCACCATGGTCGCCGCGGCGGACGGGCCGCCCGCCACCTACCTGTTCTTCGTCGACCCCACACC
GCCCGGCGTCACCTGCATGCAGTACCACCTCGGCATCCTCACCGCCGCCCTCGGCAGGTACGTATACGACTCGATCGACC
GTGTGTGATCCAACTCATGCGAAGCATTCATACGTTGGCGTGCGTGGGTGCATGGTGATTGTGGGTTCGTGTTGAAGCGA
GGAGAAGGCGAAGGCGGCGATCATATACAACTACAAGAACGTGGTCAGCGGCTTCTCGGCGAGGGTCACGCCGGCCGAGC
TCGAGGCCATCAAGAGTAAGCTCAAGCCCCGTTGATCAATTGATTGCAATCAGTTAGCTTAGCTAGATCGATGTTGATGT
GGTGTACGTGGGCATGCATGCAGAGCAACCGCATGTGAACCGGGCGCTGCCGAGCGCGACGTTGCAACTCATGAGCAGCA
ACTTCGACGGCGTCAACTGA------------------------------------------------------------
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>chr5D_1_TraesCS5D01G519300
TATCTCCGCCTAATGGCGTTTGTATCCCGGCTAGTCTAGCTGTATAACTTGTTTCAATATATCTTAAAACAAAAAAAGTG
CCCTCTAGATCATCTAACGTAGAAGTTTTGTAGTACTAATTCATTTCTCCGGCATGGTTGTTGGAACGTAATTAAGACGT
CATTGCGGCCACGTGATGGCGCGCGCAAAGCGCATGTATGCATAGTGAGATTCTTCTAGTACAACCTTGCTTGTTATTTG
GCAAAAAAAAAACTTGCTAGTTGACTTTGGATTAAATTTGAATGAAATACCAACCGTTTTTTATAATCCTAATACATAAA
TAAGTTGTCATTGTAAAGTAAGTAAAGTAATTAGTGAACAAGCAACATCAAGTAGG---TGGAATCTTGATGCCTATTTT
GTCAGGACCCATGGGAATCTCTGGTGTCCCAGTTTTGTCGTGTCTGCCCATGTCGGTACTAATCACAATCTCAAGTCAAA
GTCCCCACAAAGCCTTGCATTTGTTTGTTTCTGCAAAATTTCCTCGTAGACAAATTCCCATTAAAAATGGAAGAAAAGTT
CGTCCAAGTACAGCCGAACGTACGTATCCAGCAGTGACGGCGACTTGGGAATCTGACAGCTTAACCCCTTGGTG-GTGAC
ACGCACATACTATGATGTAGGTGTGGACGTGTGGTGCAGGGGGA--GGGCGTGCTGGTCGGCAGCGTGCCGTGGTATACA
CCGTGATGGTGCTCCACAAGCGCTCCAGCCTCCTTCAACGCATCGACGATGTAGCTCATGTATATTGAAGCAAAAAAACG
CCGGAAATTTGATTGCAACATCGAGATGAACGTACGTATATGCATGCCGGTTGCTATTTTTGGAGCCATGGGACGAAAGC
GCTGTCGCAACCGAACAACCGGCGCCGTTCAATACGGGCCTCGTCTCTTCATAGCTCCATAAACAGAGAACCAACAAGAC
AAGAGGAAACCTTTCCTGCCCGATCGATCC-ATCGATCTTGCATGCAATGACGCCTCCGACGGCCACCTCCCTCACCCTC
CTCGTCCTCGCCGCCATCACCATGGTCGCCGCGGCGGACGGGCCGCCCGCCACCTACCTGTTCTTCGTCGACCCCACACC
GCCCGGCGTCACCTGCATGCAGTACCACCTCGGCATCCTCACCGCCGCCCTCGGCAGGTACGTATACGACTCGATCGACC
GTGTGTGATCCAACTCATGCGAAGCATTCATACGTTGGCGTGCGTGGGTGCATGGTGATTGTGGGTTCGTGTTGAAGCGA
GGAGAAGGCGAAGGCGGCGATCATATACAACTACAAGAACGTGGTCAGCGGCTTCTCGGCGAGGGTCACGCCGGCCGAGC
TCGAGGCCATCAAGAGTAAGCTCAAGCCCCGTTGATCAATTGATTGCAATCAGTTAGCTTAGCTAGATCGATGTTGATGT
GGTGTACGTGGGCATGCATGCAGAGCAACCGCATGTGAACCGGGCGCTGCCGAGCGCGACGTTGCAACTCATGAGCAGCA
ACTTCGACGGCGTCAACTGATCCAATCTAGTCCTGCCCATCCATTCGGCTGATTCGGGCTGATACATATCCTGCAACAC-
-GTGTACTGATTCTCTGGAGAAGCGAACATCTTTTTTCTCTTCAAG-----AAGATCGGATGATGATGTAATCTCATTAG
CAAAGCTCTTACTAATTTTCATGTGTGCCTA---TCTATTTTTGGTTCTAGTTCTGCAATCTGCATGAATGTGCATGTAC
TTGCAGATAATGCAAAATCG-CCTCAAAATGATTCCTTAGGCTGTGTTTGATAGCAAATGGTGAAATAAACTGAAGTATC
CAAAACTGAAGTAATTTTGCCAGTAGGTATGAGATACCATGGTTTCATCAAAACACAATATTTTGAAGTATTCACAATAC
ATAGAACCTGTTTGGTTATTGTCGCATACCGCTGTAAATTTTGCTGTCTAGCCATTGTGTTAGCAGTGCAAACAAGCGCA
GCTAGCTGGCCGTTTGAATATTTTTTTTCTGTTGCATTCAACTAATCTGCCATGCACATGCAGCTAGCTAGCATATAGCT
TACCGTTAGCAGGGTAAACACGCCTAGCTGGCTTCTTTACAATTTCTGGCGCGTTATTCCCGGCAGCTAGCTAGGTAGCC
CTTACCTTACCATACGCGTGCATAAGAACAGGAGAATGCAAAAACTGAACGGAGCTGCTAAAAATCAGTCGACCAGTGGA
GTCTCAGTCGACGCCTCAACCGTTGGATTGTCGTTTCTTCAAGATTCCCGCAGCTCAGCTTCTTTGTCTCAATTCGGCCT
GCTAAAGCGTGCGTTTGGCCTGTTTTTCTTTCCCGTTTCCTTGTTTGGTCCGGGCTCCTTTTGTTGTGGCGGGGCCAGGG
GTTTGCCCGTGGGCTGGGCAGGCGTTCAGCCATTTTTTGTTGTTTGCTTTTTGTTCTGTTTCTTTTCTTTTGTAAACTAT
TACAATTGAAGAGAGATAGAAGAGCAAGTTGTCATCATTACTGCCTGTGACTTAGGGAGGGGAAGGGGTCC
>chr4A_299
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----------------------------------------------------------TTTCATAACCCTTATAGATAAA
TACATTATCATTGTAAAGTTAGTAAAGTAATTACTGAGCAAGCAACATCAAGTAGTAGATGGAATCTCGATGCCTATTTT
GTCAGGACCCATAGGAATCTCTGGTGTCCCAGTTTTGTCGTGTCTCACCATGTCGGTACTAATGACAATCTCAAGTCAAA
GTCCCAAC-AAGCCTTGCATTTGTTTTCTTCTGCAAATTTTCCTCGTAGACAAATTCCCATTAAAAATGGAAGAAAAGTT
CCGCCATGTACAGCCGAACGTACGTATCCAGCAGTGACGATGACTTGGGAGTCCGACAGTTTAACCTCGTGGTGGGTGAC
ACGTACATACGATACAT-----------GTGTGGTGCAGGGGGGGTGGGCGTGCTGGCCGGCACCGTGCCTTGGC--ACA
CCGTGATGGTGCTCCACAAGCTTTCCAAGGTCCATCAACGAATCGTCGATGTAGCTCATGTATATTGAAGCAAAAAACTA
TCGGAAGTTTGATTGCAACATCGAGATGCACGTACGTATATGCAGGAA-GTTGCTATTTTTGGAGCCATGAGACAAAAGC
GCTGTCGCAACCGAACAACTGGCGCCGTTCAACACGGGGCTCGTCTCCTCATAGCTCCATAAACAGAGAACCAACAAGAC
AAGAGCAAACCTTTCCTCCCCGATCGATCGAATCGATCTTGCATGCAATGACGCCTCCGACGGCCACCTCCCTCATCCTC
CTTGTCCTCGCCGCCGTCACCATGGCCGCCGCGGCGGACGGCCCGCCCGCCACCTACCTATTCTTCGTCGACCCCACACC
GCCCGGCGTCACCTGCATGCAGTACCACCTCGGCATCCTCACCGCCGCCCTCGGCAGGTACGTATACGACTCGATCGACC
GTGTGTGATCCAACTCATGCGAAGCATTCATACGTTGGCGTGCGTGCGTGCATGGTGATTGTGTGTTCGTGTTGAAGCGA
GGAGAAGGCGAAGGCGGCCATCATATACAACTACAAGAACGTGGTCAGCGGCTTCTCGGCGAGGGTCACGCCGGCCGAGC
TCGAGGCCATCAAGAGTAAGCTCAAGCCCCTTCGATCAATTGATTGCAATCAGTTAGCTTAGCTAGATCGATGTTGATGT
GGTGTACGTGGGCATGCATGCAGAGCAACCGCATGTGAACCGGGCGCTGCCGAGCGCGACGATGCAACTCATGAGCAGCA
ACTTCGACGGCGTCAGCTGATCCAATCTAGTCCTGCCCATCCATTCGTCTGATTCGGGT---------------------
TGTGTACTGATTCTCTGGAGAAGCGAATATCTTTTTATTTTTTATTTTGCCAAGATCGGATGATGATGTAATCTCAATAG
CTAAGCTCTTACTAATTTTCATGTGTGCCTGCTGTCTATTTGTGGTTCTAGTTGTGCAATCTGCAGGAATGTGCATGTCC
ATGCAGATAATGCACAATCG-CCCCAAAATGATTCCTTAAGCT-------------------------------------
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>chr5B_769
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------------------------------------------------------CTCATGTAAATTGAAG-AAAAAACTG
TCCGAAATTTGATTGCAACATCGAGATGAACGTACGTACATGCAGGAA-GTTGCTATTTTCGGAGCCATGGGACAAAAGC
GCTGTCGCAACCGAACAACCGGCGCCGTTCAATACGGGCCTCGTCTCCTCGTAGCTCCATAAACAGAGAACTGACGAGAC
AAGAGGAAACCTTTCCTGCCCGATCGATCGAATCGATCTTGCATGCAATGACGCCTCCGACGGCCACCTTCCTCACACTC
CTCGTCCTCGGCGCCGTCGTCATGGGCGCCGCGGCGGACGGGCCGCCCGCCACCTACCTGTTCTTCGTCGACCCCACACC
GCCCGGCGTCACCTGCATGCAGTACCACCTCGGCATCCTCACCGCCGCCCTCGGCAGGTACGTATACGACTCGATCGGCC
GTGTGTGATCCA-------------ATTCATACGTTGGCGTGCGTGCGTGCATGGTGATTGTGTGTTCGTGTTGAAGCGA
GGAGAAGGCGAAGGCGGCCATCATATACAACTACAAGAACGTGGTCAGCGGGTTCTCGGCGAGGGTCACGCCGGCCGAGC
TCGAGGCCATCAAGAGTAAGCTCAAGCCCCTTGGATCAATCTATTGCCATGAGTTAACTTAGCTAGATCGATGTTGATGC
GGTGTACGTGGTCATGCATGCAGAGCAACCGCATGTGAACCGGGCGCTGCCGAGCGCTACGTTGCAACTCATGAGCAGCA
ACTTCGACGGCGTCAGCTGATCCAATCTAGCGCGGCCCATCCATTCGGCTGATACGGGCTGATACATATCGTGCAACTCG
TGTGTACTGATTCTCTGGAGAAGCGAACATCTTTTTTCTCTTCAAG-----AAGATCGGATGATGATGTAATCTCATTAG
CTAAGCTCTTACTAATTTTCATCTGTGCCTC---TCTATTTTTGGTTCTAGTTCTGCAATCTGCATGAATGTGCATGTAC
TTTAAGATAATGCACAATCGCCCCCAAAGTGATTCCTTAAGCT-------------------------------------
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>chr5B_769
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------------------------------------------------------CTCATGTAAATTGAAG-AAAAAACTG
TCCGAAATTTGATTGCAACATCGAGATGAACGTACGTACATGCAGGAA-GTTGCTATTTTCGGAGCCATGGGACAAAAGC
GCTGTCGCGACCGAACAACCGGCGCCGTTCAATACGGGCCTCGTCTCCTCGTAGCTCCATAAACAGAGAACTGACGAGAC
AAGAGGAAACCTTTCCTGCCCGATCGATCGAATCGATCTTGCATGCAATGACGCCTCCGACGGCCACCTTCCTCACACTC
CTCGTCCTCGGCGCCGTCGTCATGGGCGCCGCGGCGGACGGGCCGCCCGCCACCTACCTGTTCTTCGTCGACCCCACACC
GCCCGGCGTCACCTGCATGCAGTACCACCTCGGCATCCTCACCGCCGCCCTCGGCAGGTACGTATACGACTCGATCGGCC
GTGTGTGATCCA-------------ATTCATACGTTGGCGTGCGTGCGTGCATGGTGATTGTGTGTTCGTGTTGAAGCGA
GGAGAAGGCGAAGGCGGCCATCATATACAACTACAAGAACGTGGTCAGCGGGTTCTCGGCGAGGGTCACGCCGGCCGAGC
TCGAGGCCATCAAGAGTAAGCTCAAGCCCCTTGGATCAATCGATTGCCATGAGTTAACTTAGCTAGATCGATGTTGATGC
GGTGTACGTGGTCATGCATGCAGAGCAACCGCATGTGAACCGGCCGCTGCCGAGCGCTACGTTGCAACTCATGAGCAGCA
ACTTCGACGGCGTCAGCTGATCCAATCTAGCGCGGCCCATCCATTCGGCTGATACGGGCTGATACATATCGTGCAACTCG
TGTGTACTGATTCTCTGGAGAAGCGAACATCTTTTTTCTCTTCAAG-----AAGATCGGATGATGATGTAATCTCATTAG
CTAAGCTCTTACTAATTTTCATCTGTGCCTC---TCTATTTTTGGTTCTAGTTCTGCAATCTGCATGAATGTGCATGTAC
TTTAAGATAATGCACAATCGCCCCCAAAGTGATTCCTTAAGCT-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S---S---S-----
--SS--S------------S-------------S---S-----------------S-----------S------------
------------S--------------------------------SS----------------S----------------
-----S--S-----------------SS---------S------------------------------------------
-SS---S--------------------------------SS---------S--S-----S------S-S-----------
---S------S--SSSSSSSSSSSSSSS---------------S-------------S-----S------S---SSS---
---------------------SS----SSS---S------S----S-------------------------------SS-
S-------------------------------------------S-SSS-------------------------S-----
-----------------------------------------------S--------------------------------
-----------------------------S--------------------------------------------------
---------------S---------S------------------------------------------------------
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----------------------------------------------S----------------S----------------
------------------S-------------------------------------------------------------
------------------------------S-S-----------------------------------------------
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---------------S------------------------------------------------------S------S--
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-S----------------------------S-------------------------------------------------
--------------S--------S---------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_35
---------------GCGTTTGTATCCCGGCTAGT---------------------------------------------
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>reverse_2000
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-------------------------------------------------------------------------------A
GCTAGCTGGCCGTTTGAAT-------------------------------------------------------------
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