>input_sequence_77118
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-------------------------------------------------ATGGGAAGAAGAAGAAGCCTGGCGCCGCTGC
TGC---T---GATCTTTGGCGTCCTCGCCGTCGTGCTCGCGGCTCTTGCGCCCGTCGCCGAATCCAGCAGCAGCCACCAC
CACCACCAC------GGCCATGGCCATCACTCCCGTGTCCAAAGCAGAGGTA--AGCAAGATCATCTTGTTGCATCCTAG
AGCACCTTCCATGACGGAATAGGGTGGCAGATCGATCTGTTTACCT---------CGTGACTAATTGGGAACGAAACTAT
ATCTCTGGATTTGCAGGGCACGGAGGAGAGGGGGAGCAATCGTCCTCGGCGGCGGCGGCGGCGAAGGCGAGGGGGAGCGC
GTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAGTGCCGGTGCATGGACGCGGCGCCCGGCG
GGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCGCCCTCGCCGTGCACCCGGCCGTGTACCAGTGCATGGACCGCGTC
CCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGA--------------------------------
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>chr5B_1_TraesCS5B01G498100
GCAACTACCAAGTGATGCTTGATTTTGCGGTGGAGCGTGACATGCATAGTTGTGGGCGTCGAGGTCACCAAGATGGAGTT
TGTTCACACGATTATGCACCGGATGAAGGG-GAACACCATCATGTACCGCTTCTTCATCAACATTGCCAACAACATCTAA
ATGCC-GATGTTGAGGGTCTAGAACACACACTTCATTTGGCTACAATGAAGCGGTTGTTGACATATGCACTCAAACTACA
CAAG-------------AGAAACAAACTATATGTGGTACTCCCTCCGTCCAAAAATATTTGTCAGAGAAATGGA-GTATT
TAAACGTATTTTAGTTCATGATACATCCATTTTTATTCATTTCTCCGACAAGTATTTTAGAACGGAGGGAGTATTTCACA
AGAAAATGGCTCACACCGTGTGCAAGTTAACACACTC-GTGACAAAACGATCTCGCATACACAATCTATCAAGTTCGTGA
CCGAATTTTGCCACATTTA-----------------------------------------CCAAATTTGTGAGTATTCAC
ATCCCCGACAAGCTCATGGATCAACGGCGGGCTTTACTTGGAATCTTGGCTCATGCTCTCTTTACTTGGAATCTTGGCTC
ATGCTCTCTAAATGAAAAAGAAAAATCTCTACTAAACGGCAAATGTTCTGTACTTATCTGTAATCTTTAGAAAACGCACG
GACTACGCTGCAAAAATGAGAACACTAGTGATAAACCTTCAATCCTATCACCAGCACGACGCTCCCATCAACTCCAAAAG
AAAAAGGGGAAA------GAAAACAC-----------------TTATCCAATCCTCTCTGCCCGTTGCCGGCGTCTCAGT
GGGCAGCCGCACGCAGCTTTGCTTCTCACTGTCCAGGGCCCCGTCTTCTATAAGATGACCCCAGGCTTCTGTTTGCCGCG
TACAGATAGAAGATAGAGGCCATAGCCAGAGAGACCAAGCAACCAGAGAAGCCGTAG--------CAAGTTCCTGCGAGA
GAGGAAAGAAATCGAAGAGGGAGAGATATAGTGAGTGACACACACAGAGATGGGAAGAAGAAGAAGCCTGGCGCCGCTGC
TGC---T---GATCTTTGGCGTCCTCGCCGTCGTGCTCGCGGCTCTTGCGCCCGTCGCCGAATCCAGCAGCAGCCACCAC
CACCACCAC------GGCCATGGCCATCACTCCCGTGTCCAAAGCAGAGGTA--AGCAAGATCATCTTGTTGCATCCTAG
AGCACCTTCCATGACGGAATAGGGTGGCAGATCGATCTGTTTACCT---------CGTGACTAATTGGGAACGAAACTAT
ATCTCTGGATTTGCAGGGCACGGAGGAGAGGGGGAGCAATCGTCCTCGGCGGCGGCGGCGGCGAAGGCGAGGGGGAGCGC
GTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAGTGCCGGTGCATGGACGCGGCGCCCGGCG
GGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCGCCCTCGCCGTGCACCCGGCCGTGTACCAGTGCATGGACCGCGTC
CCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGACCGTGACCGGCCGGGGCAACCGACCAGCTGAC
CAACCGCCCCACCACACCTACCGCCACCGGCGACGGACGAATCTTGATGGCATCACGGACAGAGATGCCAGCCAGCCACA
CCT-TTTTTTTGTTGTTAATTAAGGCGCGGCTTGTCCTGTTGACTTGACTCTGTAACACGTATGGCTTCTTGTGTAAATT
GGAGTATAAACA---------------------------------AAGCTGGACTTGGGTTTGTTTGAGCGACTCCGAGT
CTCGTCCTCTGCACTGCATCTTGTTTATCTCTCGAGACAGAGTTGTTGGTAATTAACAAGTTCATTATTGGAGGGGTGAC
CGAATA-------CTCCTACTCTCCTACAGATCTTGCATCTGACGCAGCACAGCACCGGTCGCCGGACCGGATGACGAAC
CTCGACGCGGTCGGGCATCGGCGTCGTGCTCCAGGGGAGGGGAAGGAGCTAGCTGAGATCGACGTTGGGCACGTTGCACT
GCACAGAGAGCGTGGAAAATCTAGTGATATGCGTCGCCTATGACACGTTACTTTACTTTGCATCAAGCAGTCTTTTTTTG
ACGCGACTAGCCAGCAATCGTTGGCTGGCTAGCGCTCCAGGGCACACACTCTGTTTATGGTAATGGTCCCTCCCCTTGTC
CAGCTGTCAGCCAAAAAAGGAAAGAAACGGTCCCAACTGTTCCTCCCAGCACATGTCCCCACGCCAACAAACCTTCGCAA
ACCTCTCCACCCTCATCACCTATTCTCCAGTCCAGCCCTCATCTGTAGCCTGCTTAACTCCACATCTGGGAGTTCTGATC
CACCCCATCCCCACGAACTAGCGCCTCCCCTGAAGCATGTAGCAACGTTAGTTTCCTCAAACCCCTCTCTTGTACGTCCT
CCACCACACAACCTCCCTTTCCGAGTAGAAAAACTCCAGCTTTGGGTTTTGATATCCACAAAATCCCTGCAACAAAAAAG
GCCATGATTTCCTGGTGTTATGCATTCAACTCCCACCTTGTTTTTATGT
>chr5D_4
---ACTACCAGGTGGTGCTAGATTTTGTGGTGGATCGTGACATGCATAACCGTGGGCGTCGAGGTCACCAGGATGGAGTT
TGTTCACACGACTGTGGACCAGATGAAGGG-GAGCACCGCCATGTACCGCTTCGTCATCAACATCGCCAACAACATCTAG
AATGCGGATGTTGGGGATCTAAACCACACACTTCATTTGGCTACAATGAAGCGGTTGTTGACATATGCACTCAAACTACA
CAAGAGAGACAATTGAAAGAAACAAACTATATGTGGTACTCCCTCCATCCAGAAATACTTCTTAGAGAAATGGAGGTATC
TAGATGTATTTTAGTTCAAGATACATCAATTTTTACTTATTTCTCTGACCAGTATTTCAGAATGGAGGGAGTATTTCACA
AGAAAATGGCTCACGCCGTGTGCAAGTTAACACACGTTGTGACAAAACGATCTCGCACACACAATCTATTAAGTTTGTGG
CCGATTTTTGCCACATTTTCACAATCTATTAAGTACGTGACTGATTTTGGCCACATTTTCCCAAATTTGCGAGTATTCAC
ATCCCTGGCAAGTTCATGGTTCAACGGTGGGCGTTACTTGGAGTCTTGGCTC---------------------------C
ATGCTCTCTAAACGAAAAAGGAAGATCTCTACTAAACCGCAAATGTTCTGTACTTATCTGCAATTTTTAGAAAAAGCACG
GACTGCCCTGCAAAAG-GAGAACACTCGTGATAAACCTGCAATCCTATCACCAGCACGACGCTCCCATCAACTCAAAAAT
TAAAAAGGAAAG------AAAAACACGACGCTCCCATCAAAGTTTATCCAATC--CTCTGCCCGTTGCCGGCGTCTGAGT
GGGCAGCCGCACGCAGCTTTGCTTCTCACTGTCCGGGGCCCCTTCTCCTATAAGATGACCCGAGGCTTCTGTTTGCCGCG
TACAGATAGAAGATAGAGGCCATTGCCAGAGAGACCCAGCAACCAGCAACCAGAGAGGCCATAGCCAAGTTCTTGCAAGA
GAGGAAAGAAATCGAAGAGGCAGAGAAACAGAGGGAG------GCAGAGATGGGAAGAAGAAGAAGCCCGGCTCTGCCGC
TGC---TGGTGATCTTCGGCATCCTCGCCGTCGTCCTCGCAGCTCTTCCTCCCCTCGCCGAATCCAGCAGCAGCCACCAC
CACCACCACCACCAAGGCCACGGCCACCACTCCCGTGTCCAAAGCAGAGGTA--AGCAACACCTTCTGGTTGCATCCTAA
CGCACCCTCCACGACGGAGCAGTGTGGCAGATGAGATTAATCAGCTTGTGTTGTGCGTGACTAATTGGGGATGAAATTAT
CTCT--GGGTTTGCAGGGCACGGAGGAGAGGGAGAGCAGTCGTCCT---CGGCGGCGGCGGCGAAGGCGAGGGGGAGAGC
GTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACTCGCCGCAGTGCCGGTGCATGGACGCGGCGCCCGGCG
GGTGCCACCCGGCGTGCCGGGACTGCGTCAAGTCACCCCTCGCCGTGCACCCGGCCGTGTACCAGTGCATGGACCGCGTC
CCCAACTTCTGCCAGCGGCGCTGCAACGGCGCCGTCGCCGCCCACTGACCGTGACCGGCCGGGGCAACCGACCAGCTGAC
CAACCGCCCCACCACACCTACCGCCACCGGCGACGGACGAATCTTGATGGCATCACGGCCCGAGATGCCAGCCAGCCACT
ATT-TTTTGTTTTTGTTAATT-AGGCGCGGCTTGTCCTGTTGACTTGACTCTGTAACACGTATGGCTTCTTGTGTAAAGT
GGAGTATAAA--------------------------------AACAAGCTGGACTTGGGTTTGTTTGAGCGACTCCGAGT
CTCGTCCT-----CTGCATCATGTTTATCTCTCGAGACAGAGTTGTTGGTAATTATCAAGTTCATTATTGGAGGGGTGAC
CGAATAACAAATACTCCTACTCTCCTACTGATCTTGCGCCTGACGCAGCACACCACCGGTC-----ACCCGAGGATGAAC
CTGGACGCGGTCCGGCATCGACGTCGTGCTCCAGGGGAGGGGAAGGAGCTAGCTGAGATGGACGTTGGGCACGTTGCACT
GCACAGAGAGCATGGAAAATGTAGTGAT----------------------------------------------------
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-------------------------------------------------
>chr5A_4
---ACTACCAGTTGATGCTTGATTTTGCGGTGGAGCATGACATGCATAGCCATGGGCGTCGAGGTCACCAAGATGGAGTT
TGTTCACACGACTATGGACCGGATGAAGGGAGAGCACCGTCATGTACTGCATCGTCATCAACATCGCCAACAACATCTAT
AATGCGGATGTTGAGGATCTAGACCACACACTTCATTTGGCTACAATGAAGCGGTTGTCGGCATATGCACTCAGACTACA
CAAGAAA-ACAATTGAAAGAAACAAATTATACGTGGTACTCCCTCCGCCTAGAAGTACTTGTCAGGGAAATGGAGTTATC
TAGACGTATTTTAATTCAAGATACATTCATTTTTACCCCTTTCTTCAACAAGTATTTCGGAACGGAGGTACTATTTCACA
AGAAAATGGTTCACACTGTGTGCAAATTAACACACATTGTGACAAAACGATCTCGCACGCACAATCTATTAAGCTCGTGG
CCCATTTTTGCTACATTTTCACAATCTATTAAGTTCGTGGCCGATTTTTGCCACATTTTCCCAAATTTGTGAGTATTCAC
ATCCCTGGCAAGTTCATGGGTCAGCGGTGGGCTTTACATGGAGTCTTGGCTC---------------------------C
ATGCTCTCTAAAAGAAAAAGGGAAATCTCTACTAAACGGCAAATGTTCTGTACTTATCTGCACTTCTTAGAAAAAGCATG
GACTGCCCTGCAAAAG-GAGAACACTTGTGATAAACCTGCAATCCTATCACCAGCACGACGCTCCCATCAAGTCCAAAAG
AAAAGAAAAAAAAAGAAAAAAAACACGACGCTCCCATCAAAGTTTATCCAATC--CTCTGCCCGTTGCCGGCGTCTCAGT
GGGCATGCGCACGCAGGTTTGCTTCTCACTGTCCGGGGCCCCGTCTCCTATAAGATGACCCGAGGCTTCTGTTTGCCGCG
TACAGATACAAGATAGAGGCCATAGCCAGAGAGACCCAGCAAACAGAGCAAGTCTTCCACGCCCGCCAGTTCTTGCAAGA
GAGGAAAGAAATCGAAGAGGCAGAGAAGCAGAGAGAG------ACAGAGATGGGAAGAAGGAGAAGCCCGGCGCTGCCGC
TGCTGGT---GATCTTTGGCGTCCTCGCCGTCGTCCTCGCAGCTCTTCCTCCGCTCGCCGAATCCAGCAGCAGCCACCAC
CACCACCAC------GGCCATGGCCATCACTCCCGCGTCCAAAGCAGAGGTACGAGCAAGATATTTTTGTTCCTTCCTAG
TAGGAGTGC----ACGGAATAGTCTGGAAATGAG----------CT---------TGTGACTGATTGGGGATGAAATTAT
CTCTTGA---TTGCAGGGCACGGAGGAGAGGAAGAGCAGTCGG---CGGCTGCGGCGGCGGCGAAGGCGAGGGGGAGCGC
GTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAGTGCCGGTGCATGGACGCGGCGCCCGTCG
GGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCCCCCTCGCCGTGCACCCGGCCGTGTACCAGTGCATGGACCGCGTC
CCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGACCGTGACCGGCCGGGGCAACCGACCAGCTGAC
CAACCG-CCCACCCCACCTACCGCCACCGGCGACGGACGAATCTTGATGGCATCACGGCCAGAGATGCCAGCCAGCCGGC
CACCTTTTTTTGTTGTTAATT-AGGCGCGGCTTGTCCTGTTGACTTGACTCTGTAACACGTATGGCTTCTTGTGTAAAGT
GGAGTATAAACACGTATGGCTTCTTGTGTAAAGTGGAGTATAAACAAGCTGGGCTTGGGTTTGTTTGAGCGACTCCGAGT
CTCGTCCT-----CCGCACCTTGTTTATCTCTCGAGACAGAGTTGTTGGTAATTAT-AAGTTCATTATTGGAGGGGTGAC
TGAATAACAAATACTCATACGCTCCTACTGGTCTTGCATCTGACGCAGCACACCACCGGTCACCGGACCGGAGGATGAAC
CTGGACGCGGTCGGGCATCGACGTCCTGCTCCAGGGGAGGGCAAGGAGCTAAGCT-GATGGACGTTGGGCACGTTGCACT
GCGCA-AGAGCATGGAAAATCTAGTGAT----------------------------------------------------
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>SNPs
SSS-------S--------------------------------------SS-----------------------------
-----------S----S----------------S----S--------------S----------S--------------S
-SSS------------S------S--------------------------------------------------------
---------------------------------------------------S-----S---------------------S
--S---------------S----------------S---------------------S----------------------
-----------------------------------SS--------------------S-----------S---------S
----S-------------S-------------------------------------------------------------
-----S-S----S------S-------S--------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------S-------S---------------------------------------S---S---------S-----
----S-S--------SS---------S-----------S-----------------------------------------
-----S--S---------S----------------------------------SS-------------------------
----------------------------------S-----------S--------------S------------------
------------------------------------S-------------SSSS------------------S---S---
--------------------S-----S-S--S---S-SSSSSS-------------------------S-----S--S--
----------------------------------S-----S------S-S---S--------------------------
---------------------------------------------------------------S----------------
S----------S----------S---------S-SSS-SS-S-S-------------------------S-S----S---
S---SS--S-----------------------S-----S-----------------------------------------
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-----------------------------------S--------------------------------------------
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----------------------------------------------------------S--------------------S
-S-------------------S--------------------------------------------------------S-
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--------SSSSS------------------------------------------S------------------------
----------------------------S-----------------------S--------S----------S--S----
--S-----------------S--------------------------------------S--------------------
-----------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_588
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--------CAAGCTCATGGATCAACGGC----------------------------------------------------
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>reverse_2358
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-------------------------------------TGTTCCTCCCAGCACATGTC-----------------------
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