>input_sequence_77116
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-------------------------------------------------------------ATGGAGAAGAAACATATGA
AGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTGTCATCTTCCTA
TCTATATTGGTGGAAGTATTCAACGAGGAATGTGTCTTTTGTTGAACCAGGTTCATGAGTTGCATCGCGTATACGAGGTT
CAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGAGGAGCCCAGCTCAGGCAAGAGAGGATACTGAACCAGAACCAAT
GCTGGATACAGATCGCTCACG---------------------------CGCTCCTTTTATCGAGGACTTCAACCTGGAGC
TGACACTAGCAACTGGGGGTGATACGCGGAAGCAAGAGATGACATCCAACTCTGAGTCTGGACCAACGGTGACATCGTCG
ACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCTGAGTCCAATGTAGACCTGAGGTTTCAACATGAGAGCAAGAGGCA
TGATGATCAGCTCACGCAGTCTCCCTGGCTCTATCAATGTTTAAGTCTCAAGATGGCTTGA-------------------
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>chr5A_1_TraesCS5A01G105500
ACTGTTTAGTTGTTTCTCTCGGGAAGCATAATGGCATGCAAGCATATAGAGCAAGGA-----------------------
TTTTCTACTCCCCCCGTCCCATAATATAAGAATGTTTTTGACAGT-----------------------------------
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-------------------AGGGAGTATAATTCTATCTCAAAGAATCAAACGATACTACACTTAAAGGGTGTAAATTCGC
TAGGTTTCAATTTGGGCAGGAATGGGTAAGAGAATTTCTGTTGATGTTCAATCGCTCTGTTACACTGAAATGAAAGGCTG
ATAGAGTTCAGGTTACTTTGCAAGGTACAGATAGGAAAACCTAAATATTTTTGTAAATCCA-----GTATATTAGGAGCC
AAAATTAGAATTGTGCAGGCATACGAACTTTAAGATCATCAGACCTAAAAGTGCTTCTTGCCATTGCCTCCACGAACTCA
CGATCTTAGCTGTCCTAATTGTCTGACCGACGTGCATAGTTTCTGTTACCTT-CATATAATCTTCGATAGTAT-CATGAT
ATATGCCTT---TTGCCCTAAAACTCTCAGCTAATTCACAAGGAAAATA----CCAAACTTTTATACAACATTTCTCAAC
AGAAAAAACAACCTGGTCTGCCCCCATGCTATTTCCCAGTTACAAACCAGTGCACATGCTCAGAGATAAACTGACTAATG
TGTTAGGTCACATCACACACCACCATAGCATTTATTTATGCTTGCA--------TAGGATACTCATTTACACAACTATAC
AACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATAGTCCTATGTGGAGAATAATAGAACTTGTACAGAGCTATAGAG
AAGCAAGCACAATCATTCAGAAGCTGCACATGAGGGTGTCGCCATCTCAACGTAGGAGATAATTCACGACAAGCAGACAC
GCAACCAGCACATAAACAAAGCTCCAATAATTG-AATGCATATGCAGCATATTGCTATTGTTGGGAGAAAA-CTTTTGGT
ACTCATTTGTAAGCCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGATCGGTGAGAGATGGAGAAGAAACATATGA
AGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTGTCATCTTCCTA
TCTATATTGGTGGAAGTATTCAACGAGGAATGTGTCTTTTGTTGAACCAGGTTCATGAGTTGCATCGCGTATACGAGGTT
CAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGAGGAGCCCAGCTCAGGCAAGAGAGGATACTGAACCAGAACCAAT
GCTGGATACAGATCGCTCACG---------------------------CGCTCCTTTTATCGAGGACTTCAACCTGGAGC
TGACACTAGCAACTGGGGGTGATACGCGGAAGCAAGAGATGACATCCAACTCTGAGTCTGGACCAACGGTGACATCGTCG
ACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCTGAGTCCAATGTAGACCTGAGGTTTCAACATGAGAGCAAGAGGCA
TGATGATCAGCTCACGCAGTCTCCCTGGCTCTATCAATGTTTAAGTCTCAAGATGGCTTGATGGCTTAGCTACGGGTGGC
TTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGGAGAATGCGATCAATAGGAAGTC
ATCATTCACATCTA-AAAAAATACAACAAAAACATTTCAAAGAACACCAACGTCAAGAAAAAGTGAACGAACTGTGTAAT
CACCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAAGTATCCGCTAACAAATGTTGCATTGTATGTAGAGATCTTCA
AGCGTAAACCTTGCCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACCTAACATCTGCATAACTGGGCACAGACAA
TTTGGTAAAAACTGCTTGTTT-----TGCAATATGACAAACTTCAGAAAGATGGGAGA-ATGCCTAGTGTCATTCTACCA
TCCATACAGAAATGCCTAGCCAAAACTGTACGCAAACTAGAAAAGCCTGTCGGATACTACTCTACTGAAAACGAAATATG
CCTAGCAAGCAGTTTGTCTCTGTTTTGGTCGTTGAATATTCAAAGCTTCAATGAGCTAGTTGGTGGTAATGACGGCCCCG
TCATAGTTCCAAGTAATGCCCATGAAGACTTCCTTTCAGAAATAACTGGCAGAAACTCAGTCATTTG-TTATGACTAAGA
GCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAACGCAAAGGAAT
TGCTTACTAGCGGCTGAAAAATAA-TCCTCAGTTCAGATTGCTGCCAAACAAAGTTTGAAGCTCAAATAGATAGAATATA
TCAGGGACTTAACATTACCTGCAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCAATAAATGAGGC
CACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATTGTCTCACCTGGGAATTATATCGAT
CAAGCAATTAGAGGACTCATGAGTGTCATT
>chr5D_1
ACTGTTTCCTAGTTTCTCTGGGGAAGCACAATGGCATGCAAGCATATAGAGCAAGGAAGGAGATGCAGAATTGTGTCATG
TTTTCTACTCCCTCCGTCCGAAAAAACTTGTCCCAAGCTTGTTTCTCAAATGGATGAATCTGGCACTAACTTGGTGCTAG
ATACATCTATTTGAGGGACAAGCTTTTCCGGACGAAGGGAGTATAAGTCTTTTTAGACATTTCAAATGGAATACAACATA
CGGATGTATGTAGACATATTTTAGAGTGTAGATTCATTCATTTTGCTCCGTATGTAGTCACTTGTTGAAAATTCTACAAA
GACTTACATTTGGGAACGGAGGGAGTATAATTCTATCTCAAAGAATCAAACGGTACTACAGTTGCAGGGTGTAAATTCGG
TAGGTTTCAATTTGGGCAGGGATGGGTGGGAAACAC----------------------------------TGAAAGGCTG
ATGGAGTTTGGGT------------TACAGATAGGAAAACCTACATATTTTTGTAAAATCTAGTACGTATATTAGAAGCC
AAAATTAGAATTGTGCAGGCATACGAACTTAAGATG-ATCAGACCTAAAAATGCTTCTTACCATAGCCTCCACGAACTCA
AGATCTTAGCAGTCCAAATTGTCTGACCAACGTGCATAACTC------CCTTTCATATGATCTACGATGGTATTCATGAT
ATATGCTTTATATTGCTCTAAAACTCTCAGCCAATTCACAAGGAAAATACGTACCAAACTTTTATATAACATTTCTCGAC
AGAAAAAACAACCGGGTCT-CCCCCATGTTATTTCCCTGTAACAAACCAGTTCACATGCTCACATAAAAACTGATTAATT
TGTTAGGTCACGTCACACACCACCATAGCATTTATTTATGCTTGCA--------TAGGATACTCATTTACACAACTATAC
AACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATACTCCTATGTGGAGAATAATAGAACTTGTACAGAGCTATAGAG
AAGCAAGTACAATCATTCAGAAGCTACACATGAGAGTGTCTCCATCTCAAGGTAGGAGATAATTCACGACAAGCAGACAC
GCAACCAGCACATAAACAAAGCTCCAATTATTGCAACGCATATGCAGTATCTTGCTATTGTTGGGAGAAAAACTTTTGGT
GCTCATGTGTCAGGCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGGTTGGTGAGAGATGGAGAAGAAACATATGA
AGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTACAAGTAGTGCCATCTT-CTA
GCTATATTGGTGGAAATATTGAACGGACTGT---TCTTTTGTTGAAGCAGGTTCACGAGCTGCATCGCGTATACGAGGTT
CAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGATGAGCCCAGCTCAGGCAAGAGAGGATACTCGACCAGAACCGAT
GCTGGATACAGATCGACCACAATGGCACATCAACTCAGGCGAGAAGACCGCTCGTTTCACCGAGGACTTCAACCTGGAGC
TGACACTAGCAACTGGGGGTGATACAAGGAAGCAGGAGATGACATCCAACTCCGAGTCTGGAGCAACGGTGACATCGTCG
ACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCCAAGTCCAATGTAGACCTGAGGTTTCAACATGAGAGCAAGAGGCA
TGATGATCAGCTCACGCAGTCTCCCTGGCTCTACCAATGTTTAAGTCTCAAGATGGCTTAATGGCTTAGCTACGGGTGGC
TTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGAGGAATGCGATCAATAGAAAGTC
ATCATTCACATCTACAAAAAATACAACAAAATCATTTCAAAGAACACCAACGCCAAGAAAAAGCGAACAAACTGTGTAAT
CGTCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAACTATCCGCTAATAAATGTTGCATTGTATGTAGAGATCTTCA
AGCGTAAACCTTACCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACCTAACATCTGCATAACTGGGCACAGACAA
TTTGGTAAAAACTGCTTGTTTCTAAGTGCAATATGACAAACTTCAGAAAGATGGGAGAAATGCCTAGTGTCATTCTACCA
TCCATACAGAAATGCCTACCCAAAACTGTACGCAAGCTAGAAAAGCCTGGTGGATACTACTCTACTGAATACGAAATATG
CCTAGCAAGCAGTTTGTCTCCGTTTTCGTCGTTGAACATTGAAAGCTTAAATGAGCTAGT-GGTGGTAATGACGGCCCCG
TCATAGTTCCAAGTAATGCCCATGAAGACTTCCTTTCAGAAATAACTGGCAGAAACTCAGTCATTTGATTATGACTAAGA
GCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAACGCAAAGGAAT
TGCTTACTAGCGGCTGAAAAATAAATCCTCAGTTCAGATTGTTGTCAAAC-AAGTTTGAAGCTCAAATAGGTAGAATATA
TCAGGGACTTAACATTACCTGCAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCAATAAATGAGCC
CACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATCGTCTCACCTGGGAATCATATCGAT
CAAGCAATTAGAGGACTCATGAGTGTCATT
>chr5B_267
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-----------------------GGTACAGATAGGAAAACCTACATTTTTTTGTAAATCA-AGTACGTATATTAGAAGCC
AAAATTAGAATTGTGCAAGCATACGAACTTAAAATG-ATCAGACCTAAAAATGCTTCTTACTGTTGCCTCCACGAACTCA
AGATCTTAGCAGTCCTAATTGTCTGACAGACGTGCATAGCTC------CCTT-CATATGATCTACGACAGTATTCATGAT
ATATGCTTTATAT-------------------AATTCACAAGGAAAATACGTACCAAACTTTTATATAACATTTCTCGAC
AGAAT-AACAACCAGGTCT-TCCCCATGTTATTTCCCTGTAACAAACCAGTTCACATGCTCACAGAAAAACTGATTAATG
TGTTAGGTCACATCGCACACCACCATAGCATTTATTTATGCTTGCATAGGATATTAGGATACTCATTTACACAACTATAC
AACTTATTAATTGGCAAAATGGCAAAGCAAGCTGGATACTCCTATGTGGAGAATAATAGAACTTGTACAGAGCTATAGAG
GAGCAAGTACAATCATTCAGAAGCTACACATGAGAGTGTCTCCATCTCAGGGTAGGAGATAATTCACGACAAGCAGACAC
GCAACCAGCACATATACAAAGCTCCAATTATTGCGACGCATATGCAGTATCTTGCTATTGTTGGGAGAAAAACTTTTGGT
GCTCATGTGTCAGGCTCTGATGAAACAGGTGAGGCTGATACTTCGTGTGGGTTGGTGAGAGATGGAGAAGAAACACATGA
AGATGGCCATCCTGAGGCAAGAGCAGACATTCAGACAACAGGTAAACCAATGTCTGGTTAGAAGTAGTGCCATCTT-CTA
TCTATACTGGTGGAAATATTGAACGGAATGT---TCTTTTGTTGAAGCAGGTTCACGAGCTGCATCGCGTATACGAGGTT
CAGAAGCGGCTGATGAAGGAGATGCAGGCTGTTAAGATGAGCCCAGCTCAGGGAAGAGAGGATACTCAACCAGAATCGAT
GATGGATACAGATCGACCACAATGGTACATCAACTCAGGCGAGAAGACCGCTCGTTTCACCGAGGACTTCAACCTAGAGC
TGACACTAGCAACTGGGGGTGATACGAGGAAGCAAGAGATGACATCCAACTCCGAGTCTGGAGCAACGGTGACATCGTCG
ACTTCTGCTGAATCAGAGTCGGGGCAGCGATTCCCCGAGTCCAATGTAGATCTGAGGTTTCAACATGAGAGCAAGAGGC-
--ATGATCAGCTCACGCAGTCTCCCTGGCTCTACCAATGTTTAAGTCTCAAGATGGCTTAATGGCTTAGCTACGGGTGGC
TTACAGAAGCATATGCATTATTATATGTACATCAAAAAACTAATTCGTTGCAATCAGAGGAATGCGATCAATAGGAAGTC
ATCATTCACATCTACAAAAAATACAACAAAATCATTTCAAAGAGCACCAACACCAAGAAGAAGTGAACGAACTGTGTAAT
CGTCTTCTTTCTGCGTACAAGGGAGGGAGATGTACATAAGTATCCGCTAACAAATGTTGCATTGTATGTAGAGATCTTCA
AGCGTAAACCTTGCCTTGTCCACTTTATCTTAGGGACAAGAACAATTTTACC--ACATCTGCATAACTGGGCACAGACAA
TTTGGTAAAAACTGCTTGTTTCTAAGTGCAATATGACAAACTTCAGAAAGATGGGAGAAATGCCTAGTGTCATTCTACCA
TCCATACAGAAATGCCTAGCCAAAACTGTACGCAAACCAGAAAAGCCTGGTGGATACTACTCTACTGAAAACGAAATATG
CCTAGCAAGCAGTTTGTCTCTGTTTTGGTCGTTGAACATTGAAAGCTTAAATGAGCTAGT-GGTGGTAATGACGGCCCCG
TCATAGTTCCTAGTAATGCCCATGAAGACTTCCTTTCAGA-ATAACTGGCAGAAACTCAGTCATTTGATTATGACTAAGA
GCTCGTGATCACCTCCACGCCTGGTTTCTTTAAGCCGGCCATGTATGTTAGGTAGATGGTCCAAAGAAACGCAAAGGAAT
TGCTTACTAGCGGCTGAAAAATAAATCCTCAGTTCAGATTGCTGGCAAAC-AAGTTTGAAGCTCAAATAGGTAGAATATA
TCAGGGACTTAACATTACCTGTAAATGAACAGGGATAAACTTGAAAGTGATGAAGTCACAAAGAGGCCAATAAATGAGCC
CACTTTTGATGGTCGGAATTATATCCCGCTTTAATCTTGCAATGATCTCTGGGATTGTCTCACCTGGGAATCATATCGAT
CAAGCAATTAGAGGACTCATGAGTGTCATT
>SNPs
-------SS-S--------S--------S---------------------------------------------------
------------S------S-S--S-SSS-SSSSSSSS-SSSSSS-----------------------------------
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----------------------------------------------------S-------S--SS--------------S
--------------------S------SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--S-----SS---SSSSSSSSSS--------------------S----------------S--------------S----
------------------------------S--SSSS-------------S--------S--------------------
S---------S----------------------------S-SSSSSSS----------S----S----------------
------S---------S--------------S----------------------------------S----------S--
-------------S-----S--------S--------S--S----------S----------S---S-------S-----
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--------------------------------------S-----------------------------------------
-------S-----------------S--------S-----S---------S-----------------------------
----------------------------S-------S----------S--S-----------------------------
S-----S---S--S------------------------------------S-S---------------------------
---------------------------------------------------------------------S------S---
---------------S----S----SSSSS-SSS------------S--------S---S--------------------
-------------------------------------S----------------------------S----------S--
---------------SS---S--------------------------------S---S-S--------------------
--------------------------S-------------------------S---------S-----------------
-----------------------------------S--------------------------------------------
---------------------------------S-------------------------S--------------------
---------------------------------------------------------SS---------------------
-------------------------------S--------------------S---------------------------
-SS-----------------------------------------------------------------------------
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-------------------------------------------------SS-----------------------------
------------------------------------S---S-------S-----------S-------------------
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--------------------------------------------S-----S-------------------S---------
------------------------------------------------------------------------------S-
-----------------------------------------------------------------------S--------
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>forward_680
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--------------------GTCTGACCGACGTGCATAGT----------------------------------------
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>reverse_1537
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----------------TCACGCGCTCCTTTTATCGA--------------------------------------------
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>forward_1091
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-------------------------------GAGGGTGTCGCCATCTCAAC-----------------------------
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>reverse_2719
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------------------------------------------------------------------------------GC
CACTTTTGATGGTCGGAA--------------------------------------------------------------
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