>input_sequence_77082
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--------------------------ACAAGC------------------------------------------------
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---------------------------AAAAAGTATGCCCAAAGAGCACCGATCATTGAAAAGGTACTAGGCTGTTGCGG
CAAAATAAAACTCAGAAAGCACTAGTGCCTCTCGAAATGGCTATCTTCAAGAAGAAAGCAGGCTCCCTGTTTTTGGCAAC
TCTCATGGTCA---------------------------------------------------------------------
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----------------------------------------------TGGCTACTCTTCTCTCCTCATGCGACGCGAACAA
CGAGGTTATGTTATTT-TACATGTCTTCCTTATTCTCCTTGATCATTTGCTTAACGTGCATCTTGAAATGTTGAGATCCC
ATTAGAACTAGTGTATATTTAGCAATGCCAAAATATAAGGTGGCAAGCTATGTTGCACATAATTGGCCTAACAAAATGTG
TTGATCTGGTGCAGATACAAACAGATGCTCTCCCCCTACCTGCGAAGTGCTATGAGTTGGACTTACCTAACTGCACGTTG
GAATCATGCGAGAAATTTTGCCATGGAGGAAAGTGCACTTCCTACGATGGCTGTTGCTGCCCCATTGCCTAAGGCACCAC
TAAAATGATAAAAT---ATGTTTTGCATAATAAA----------------------------------------------
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>chr6A_1_TraesCS6A01G106300
GATAAGGTTGTGGCGGCCCTGCAGCACCGTTCCGCCATTGGAGGGACCACGACGACGGCATAAACGATGAAAGCGGTACG
GC-AGACAGGGCGGTCACGCGTATGAGGTGGTCGTCCGGTATAGGTTTTAGTTT---TTTTCTAGTTTTTTAGTTAAAAG
GTTGAAATATCGTACTTTTTATGTAAATTATGACCTTACTTTAATAAAATCTCTCATGTTTGCATGAATTTCGTCTGTTT
AGTACAAACAGTGGTTGTTGAAATGTATGCGAACAACGTTGGATGGCTGGCTCCCGCATCCGTGTCCGGGCAGTGGTTCT
CCTGTCCGCCGCGGACGGATGCTGGAGCAAATTTGCGGGTCAGAACCGTAGATGCCCTTAGCTAAGAATAGTAGATGAGT
AGATATTATCATTTAATTATACATGTGT---GTACACATATGATTTAGGAAATCTTTCATTTTCTTGCCAACTAAGCATA
TATTTGGGCTAGATCATCGTGACTAAGTTTGTACTGATTTCCCGTTGTTAATGCTTTCTTTCGATATCAGAAGATATTGT
ATTAGATAGATTTATTGTATAA----------------------------------------------------------
ACAATGTACACCGATTAATGCTCTGATTGGAAAACATAATGATGTGATATTTACTTAATTATTTATTATAATTAATAATG
CATTCATTTTACACCATCAA-CTATGAGTACAAAAGTAATTATGATATATTTTCATAGCTAATGCATCCCTGGTATTATT
GATTCCCGCAGCTTTATTTGTAACAAATTTGATTCCCCAAATACTGATTGATTTGATAACTAAAATATTGATATACTCCC
TCCGTTCGGAATTACTTGTCTCGAAAATGAATGTATCTAGAACTAAAATACGTCTAGATACATCCATTTCCGCGACAAGT
AATTCCGAACGGAAGGAGTAGAAGATATTATTAATTACCATTAAACAATTGACATAAATAGGCTGCAATATGTATCTATA
TAACAGTAGGAGAGGTGAACACTACCACAAGC------------------------------------------------
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---------------------------AAAAAGTATGCCCAAAGAGCACCGATCATTGAAAAGGTACTAGGCTGTTGCGG
CAAAATAAAACTCAGAAAGCACTAGTGCCTCTCGAAATGGCTATCTTCAAGAAGAAAGCAGGCTCCCTGTTTTTGGCAAC
TCTCATGGTCA---------------------------------------------------------------------
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----------------------------------------------TGGCTACTCTTCTCTCCTCATGCGACGCGAACAA
CGAGGTTATGTTATTT-TACATGTCTTCCTTATTCTCCTTGATCATTTGCTTAACGTGCATCTTGAAATGTTGAGATCCC
ATTAGAACTAGTGTATATTTAGCAATGCCAAAATATAAGGTGGCAAGCTATGTTGCACATAATTGGCCTAACAAAATGTG
TTGATCTGGTGCAGATACAAACAGATGCTCTCCCCCTACCTGCGAAGTGCTATGAGTTGGACTTACCTAACTGCACGTTG
GAATCATGCGAGAAATTTTGCCATGGAGGAAAGTGCACTTCCTACGATGGCTGTTGCTGCCCCATTGCCTAAGGCACCAC
TAAAATGATAAAAT---ATGTTTTGCATAATAAAAGAAAACCCTACATGCATAATACATATATGTATGTGCTAGCTCTGG
GGCTTTCTAATCCTATAACTAATCTACCCGCTCTGTCCTGAATTACTTGTCGCAAAAATAGATAAAATTAAATGTATTTA
GAACTAAAATACGTCTAGATATATCCATTTCCACGACAAGTAATTCTGGACGGAGCAGTAT-ATTAAAGCAAGCATGTTC
TTTCTTCGGTATTGCGATTGATATGGATTAAGCTACTCTAAAACCCCTGGTTCCTAACTCTGGCGACTTGCCCGATCCTT
TCCCGTCGAAAAAAAT--GAACCTTATACTTTTCTCTCTTCCTCCGACATGTCAGTGACTTAGTTTGGTAAACTCAGGGA
GTCGCGTGCGC--CGCCGACTCCTGCCCGCCTTCTTTCCCGCCAGCGCCAAGTAACCGCACGCGCCGCCAGTCAATAGAT
CCACCACGCGCCCCG-CCCCAAAGCCCCCACCGAGTACCGCGTACAACCCCAAATCCCCGCTGCCGGCCGGTGCCCAGCA
CCTCCATGGTTGCCACCATAGTTGTGGACCCCCATGACCCCATCGCGCTGCTTGTGTCGGATTCGGGGTTCCGCAGACCC
TTGAGAGGTTCAAACTCTGGGGTGTGCACGAAGGACTCTTTCTCCCCAGCCTGCCTACCCAACGATTTCATGGCCTAGCT
CGACGAACCCAAAGAACACGAGACACACAGGTTTATACTGGTTCGGGCCACCGCGTGGTGTAATACCCTACTCCAGTGTG
GTGGTGGATTGCCTCGAGGGCTGAGGATGAACTAGTACAGTGGATGAACAGCCTTAGGAGGAGAGGTGTTCTTGAGCTCG
ACGAGCTGGTGGGTGTGAGGATGGAATGGATCCGATCCAAGATGAGTTTTTCCCTACGGTGGTGGCTAGCCCTATTTATA
GAGGCCCTGGTCCTCTTCCCAAATGTTAGGCGGGAAGGGATCCCACAACGACCAAGTTTTAAGGGGGACAAATAGTACAT
>chr7D_1
GATAAGGTTTTGGTGGCCCTGCAGCACCGTTCCGCCACTGGAGGGACCACGACGACGGCATAAACGATGAAAGCGGTACC
GC-AGACAGGGCGGTCACGCATACGAGGTGGTCGTCCGGTATAGG--------------TTCTAGTTTTTTAGTTAAAAG
GTTGAGATATCGAACTTTTTATGTAAATTATGACCTTACTTTAATAAAATCTCTCGTGTTTGCATGAATTTTGTCTGTTT
AGTACAAACAGTG---GTTGAAATGTATGCGAACAACGTTGGATGGCTGGCTCCTGCATCCGTGTCCGCGCAGTGGTTCT
CCTGTCCGCCGCGGACGGATGCTGGAGCAAATTTGCGGGTCAGAACCGTAGATGCCCTTAGCTAAGAATAGTAGATGAGT
AGATATTATCATTTAATTATACATGTGT---GTACACATATGATTTAGGAAATCTTTCATTTTCTTGCCAACTAAGCATA
TATTTGGGCTAGATCATCGCGACTGAGTTTGTACTGATTTCCCGTTGTTAATGCTTTCTTTTGATATCAGAAGATACTGT
ATTAGATAGATTTATTGTATAAACAATGTACACCGATTAATGCTCTGATTTGAAAACTATTAGATAGATTTATTGTATAA
ACAATGTACACCAATTAATGCTCTGATTTGAAAACATAAGGTTGTGATATTTACTTAATTATTTATTATAATTAATAATG
CATTCATTTTACACCATCAA-CTATGAGTACAAAAGTTATTATGATATATTTTCATAGCTAATGCATCCCTGGTATTATT
GATTCCCGCAGCTTTATTTGTAACAAATTTGATTCCCCAAATATTGATTGATTTGATAACTAAAATATTGATATA-----
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--------------------GAAGATATTATTAATTACCATTAAACAATTGACATAAATAGGCCGCAATATGTATCTATA
TAACAGTAGGAAAGGTGAACACTACCACAAGCAAAAGGTATACCACAAGCAAACAGGAGGATATGGCTTGAGCGAAACAA
CAGAATCTTCAGCAACAAAATCTCAACGGTGGAAACCACAATGAGGGAGATCCGAGGAGACTTGAAATTGTGGAGACTGG
AGGGTGCATCCTGCCTGCTGTCGCCTTTCGGGGACCCAGGCTGAGAGATTTTTCGCCTGTGCTGTCCTCTTCTTTTCTTC
TCCTTTTAATTTCCTCTTCTTTTTTCATCCTTAGGACCATCTTGGTCTATGTACATATTGCTCCCTACCTATCATAATGA
AAAAGCCCAGCCTTGCTGGTCTCCCTTAAAAAAAATACCCAAAGAGCACCGATCATTGAAAAGGTACTAGGCTGTTGCGG
CAAAATAAAACTAAGAAAGCACTAGTGCCTCTCGAAATGGCTATCTTCAAGAAGAAAGCAGGCTCCCTGTTTTTGGCAAC
TCTCATGGTCA---------------------------------------------------------------------
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----------------------------------------------TGGCTACTCTTCTCTCCTCATGCGACGCGAACAA
CGAGGTTATGTTATTTTTACATGTCTTCCTTATTCTCCTTGATCATTTGCTTAACGTGCATCTTGAAATGTTGAGATCCC
ATTAGAACTAGTGTATATTTAGCAATGCCAAAATATAAGGTGCCAAGCTATGTTGCACATAATTGGCCTAACAAAATGTG
TTGATCTGGTGCACATACAAACAGATGCTCTCCCCCTACCTGCGAAGTGCTATGAGTTGGACTTACCTAACTGCACGTTG
GAATCATGCGAGAAATTTTGCCATGGAGGAAAGTGCACTTCCTACGATGGCTGTTGCTGCCCCATTGCCTAAGGCACCAC
TAAAATGATAAAAT---ATGGCTTGCATAATAAAAGAAAACCCTACATGCATAATACATATATGTATGTGCTAGCTCTGG
CGCTTTCTAATCCTATATCTGACCTACCCGCTCTGTCTCAAATTACTTGTCGCAAAAATAGATAAAATTAAATGTATCTA
GAACTAAAAAACGTCTACATACATCCATTTTCACGACAAGTAATTCTGGACGGAGGAGTAT-ATTAAAGCAAGCATGTTC
TTTCTTCCGTATTGCGATTGATATGGATGGAGCTACTCTAAAACCCCTGGTTCCTAACTCTGGCGACTTGCCCGATCCTT
TCCCGTCGAAAAAAATT-GAACCTTATATTTTTCTCTCTTCCTCCAACATGTCAGTGACTTAGTCTGGTAAACTCAGGGA
GCCGCGTGCGC--CGCCGACTCCTGCCCGCCTTCTTTCCCGCCAGCGCCAAGTAATCGCACGCGCCACCAGTCAACAGAT
CCACCACGCGCCCCGACCCCAAATCCCCCGCCGAGTACCGCATACAACCACAAATCTCCGCTGCCGGCCGGTGCCCAGCA
CCTCCATGGTTGCCACCATAGTTATGGACCCCCATGACCCCATCGCGCTGCTTGTGTCGGATTCGGGGTTCCACAGACCC
TTGAGAGGTTCGAACTCTGGGGTGCACACGAAGGACTCTTTCTCCCCAGCCTGCCTACCCAACGATTCCACGGCCTAGCT
CGACGAACCCAAAGAACACGAGACGCAGAGGTTTCTACTGGTTCGGGCCACCGTGTGGTGTAATACCCTACTCCAATGTG
GTGGTGGATTGCCTCGAGGGCTGAGGATGAACTAGTACAGTGGATGAACAGCCTCAGGAGGAGAGGTGTTCTTGAGCTCG
ACGAGCTGGTGGGTGTGAGGACGGAATGGATCCGATCCAAGATGAGTTTTTCCCTACGGTGGTGGCTAGCCCTATTTATA
GAGGCCCTGGTCCTCTTCCCAAATGTTAGGCGGGAAGGGATCCCACAACGGCCAAGTTTGAAGGGGGACAAATAGTACA-
>chrUn_1
GATAATGTTGTGGCGGCCCTGCGGCGCCGTTCCGCCGCTGGAGGGACCACGACGACGGCATAAAAGGTGAAGGCGGTGCG
GTAGGGCAGGGTGGTCATGCGTACGGGGTGGTCGTCCGGTATAAGGTTTTGTTTCTCTTTTCTAGTTTTTTAGTTAAAAG
GTTGAGATATCGACCTTTTTATGTAAATTATGACCTAACTTGAATAAAAACCCTCATGGTTGCATGAAATTCATCCGTTT
AGTTCAAACAGTG---GTTGAAATATATGCAAAGAACATTGGATGGCTCGCTCCCACATCCGTGTCCGCGCATTGGTTCT
CCTGTCCGCCGCAGATGGATGTTGGAGCAAATTTGCGGGTCAGAACCGTAGATGCCCTTAGCTAAGAATAGTAGATGAGT
AGAAATCATCATTTAATTATGCATGTGTACAGTACACATATGATTTAGGAAATCTTTCATTTTCTTGCCAACTAAGCATA
TATTTGGGCTAGATCATCGCGACTGAGTTTGTAATGACTTGCCATTGTTAATGCTTCCTTTTGATATCAGAAGATACTGT
ATTAGATAGATTTATTGTA----------------------------------------------------------TAA
ACAATCTACACCAATTAATGCCCTGATTTTAAAACATAAGGACGTGATATTTACTTAATTATTTATTATAATTAATAATG
CATTCATTTTACACCATCAAACTATGAGTACAAAAGGTATCATGATATATTTTCATAGCTAATGCATCCCTGGTAGTATT
GATTCCCGCAGCTTTATTTTTAACAAATTTGACTCCCCAAATATTGATTGATTTGATAACTAAAATATTGATATA-----
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>chr7A_1
GATAAGGTTGTGGTGGCCCTGCAGCGCCGTTCCGCCGCTGGAGGGACCACGGTGACGGCATAAACGATGAAGGCGGTAGG
ACAAGACATGACGGTCACGCGTACGAGGTGGACGTCCGGTTTAGGGTTTAGTTT---TTTTCTAGTTCTTTAGTTAAAAG
GTCGAGATATCAACCTTTTAATGTAAATTATGACCTAACTTGAATAAAATCTCTTATGTTTACATGAATTTCGTCCGTTT
AGTTCAAATAGTG---GTTCAAATGTATGCGAACAACGTTGGATGGTTGGCTCCCGCATCCGTGTCCGCGCACTGGTTCT
CTTGTCTGCCACGGACGGATGCTAGAGAAAATTTGCGGGTCAGAACCGTAGATGCCCTTAGCTAAGAATAGTAGATGAGT
AGATATCATCGTTTAGTTATACATGTGT---GTACACATATGATTTAGGAAATCTTTCATTTTCTTGCCAACTAAGCATA
TATTTGGGCTAGATCATGGCGACTGAGTTTGTACTGATTTACCATTGTTAATGCTTTCTTTTGATATCAGAAGATACTGT
ATTAGATAGATTTATTG------------------------------------------------------------TAA
ACAATGTACACCAATTAATGTTCTGATTTGAAAACATAAGGATGTGATATTTACTTAATTATTTATTACAATTAATAATG
CATTCATTTTACACCATCAAACTATGAGTACAAAAGTTATTATGATATATTTTCATAGCTAATGCATCCCTGGTAGTATT
GATTCCCGCAGCTTTATTTGTAACAAATTTGATTCCCCGAATATTGATTGATTTGATAACTAATATATTGATATA-----
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--------------------GAAGATATTATTAATTACCATTAAATAATTGACATAAGTAGGCTGCAATATGTATCTATA
TAACAGTAAGAGAGGTGAACACTACCACAAGC------------------------------------------------
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---------------------------AAAAAGTATACCCAAAGAGCACCGATCATTGAAAAGGTACTAGGTTGTTGCGG
AAAAATAAAACTAAGAA---ACTAGTGCCTCTCGAAATGGTTATCTTCAAGAAGAAAGCAGGCGCCCTATTTTTGGCAAC
TCTCATGGTCA---------------------------------------------------------------------
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----------------------------------------------TGGCTACTCTTCTCTCCTCATGCGAAGCGAACAA
TAAGGTTATGTTA-TTTTACATGTCTTCCTTATTCTCCTTGATCATTTGCTTAACGTGCATCTTGAAATGTTGAGATCCC
ATTAAAACTAGTGTATATTTAGCAATGCCAAAATATAAGGTGGCAAGCTATGTTGCACATAATTGGCCTAACAAAATGTG
TTGACC-GGTGCAGATACAAACAGATGCTCTCCCCCTACCTTCGAAGTGCTATGAGTTGGACTTACCTAACTGCACGTTG
GAATCATGCAAGAAATTTTGCGCTGGAGGAAAGTGCAGTTCCTACGATGGATGTTGCTGCCCCATTGCCTAAGACACCAC
AAAAATGTTAA--ACAAATGGCTCGCATAATAAAATAATTTCCTACATGCATATTACATATATGTATGTGCTAGCTCTGG
CACATTCTAATCCTATATCTAGCCTACTCGTACAATTAAAGCA-------------------------------------
----------------------------------------------------------------------AAGCCTGTTC
TTTCTTCGGTATTGCGATTGATATGGATGGAGCTACTCTAAAACCCCTGGTTCCTAACTCAGGCGACTTGCCCGATACTA
TCCTGTCGAAAAAA--CCGAACCTTATCTTTTTCTCTCTTCTTCCCACATGTTAGTGACTCGGTCTGATAAACTCAGGGA
GCAGCG--CGC--CGCCGATTCTTGCCCGCCTTCTTTCCCGCCGGCGCCAGGTAACCACACACGCCGCCGGTCAACAGAT
CCTCCACGCGGGCCGAGCCCAAATCCTCCGTCGGCTACCGCGCACATACCCAAATCCCCTATGCCGGCCGGTGCCCAACG
CCTCCATGGTTGCTGCCACAGCTGTGGACCCCGTTGACCCCATCGCGCTGCCTG--------------------------
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>chrUn_965
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----------------------------------------------------------------------TGTATCTATA
TAACAGTAGGAGAGGTGAACACTACCACAAGC------------------------------------------------
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---------------------------AAAAAGTATACCCAAAGAGCACTGATCATTGAAAAGGT---------------
------------AAGAAAGTACTAGTGCCTCTCGAAATGGCTATCTTCAAAAAGAAAGCAGGCGCCCTGTTTTTGGCAAC
TCTCATGGTCATCGCTACTCTTCGACTAGCCACAACGGTGAGTAACATACACTAGTAAATACACGTATCCCTAGACTATG
TTACTACCTTCATAGTGGGTAGTAACATAAGTGTGGTAACATGCAAAGCTTCATTTATTAGGTTATAGACTCATATTGCA
TTGAGACATGTGATGTTACAGTAACTAGTTAAGTTACTATAACTACCTCTTTCCTCATTAACTCATTGCCACATAAGCAA
ATTTGCTGAGTTGGACTCGATGTTACTGCTAAAGTTACTCCCACTGTGGCTAGTCTTCTCTCCTCATGCGACGCAAACAA
CGAGGTGATGTTA-TTTTACATGTCTTCTTTATTCTCCTTGATCATTTGGTTAACATGCATATTGAAATGTTGAGATCCC
ATTAAAACTAGTGTATATTTAGGAATGCCAAAATATAAGGTGGCAAGCTATGTTGCACATAAGTGGCCTAACAAAATGTG
TTGATCTGGTGCAGATACAAACAGATGCTCTCCCCCTACCTGCGAAGTGCTATGAGTTGGACTTACCTAACTGCACGTTG
GAATCATGCAACAAATTTTGCCATGGAGGAAAGTGCACTTCCTACGATGGCTGTTGCTGCCCCATTGCCTAAGACACCAC
AAAAATGTTAAAAACAAATGGCTCGCATAATAAAAGAAATTCCTACATGCATAATACATATATGTATGTGCTAGCTCTGG
CACTTTCTAATCCTATATCTAGCCTACTCCCTCTGTCCTGAATTACTTGTCGCAAAAATAAATAATATTAAATGTATCTA
AAACTCAAATACGTCTACATACATCCATTTCCATGACAAGTAATTTTGGACGGAGGAGTACGATTCAAGCAAGCATGTTC
TTTCTTCGGTATTGCGATTGATATGGATGGAGCTACTCTAAAACCCCTGGTTCCTAACTCAGGTGACTTGCCAGATCCTA
TCCTGCCGAAAAAAACCCGAACCTTATCTGTTTCTCTTTTCCTCCCACATGTGAGTGACTCAATTTGGTAAACTCAGGGA
GCAGCG--GGCGCCGCTGACTCCTGCCCACCTTCTTTCCCGCCGGCGCCAGGTAACCGCACGCGCCGCCAGTCAACAGAT
CCTCCACGCGTGCCGACCCCAAACCCT-CGTCGGCTACCGCGCACATCCCCAAATCCCCGATGCCGGCCGGTGCCCAGCG
CCTCCTTGGTTGCTGCTACAGCTGTGGACCCCGTTGACCCGTCGCACTTCTTG---------------------------
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>SNPs
-------------------------------------S------------------------------------------
-----------------------S---------------------S----------------------------------
-----S------S-------------------------------------------------------------------
-------------SSS----------------------------------------------------S-----------
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-------------------S----S------------------------------------S--------------S---
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------------S---------------S----------S----------------------------------------
-------------------------------------S------------------------------------------
-------------------------------------------S-------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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------------------------------------S-------------------------------------------
------------S-------------------------------------------------------------------
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--------------------SS----------------------------------------------------------
S----------------S----S------------------------------------------------------S--
-----------------S---S---------------------------------S------------------------
----------------------------SS--------------------------------------------------
----------------------------S----------------S----------------------------------
-S-------------------------------------------------------------------------S----
-----------------------S-----S--------------------------------------------------
------------------------------------------------------------------------S-------
-----------S------------SS-----------------------------------------S--S---------
------------------------S--S------S------------------S---------------------S----
------------------------------------------------------S-------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------S--------S-------------------S
>forward_968
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--------------------------------------------------------------------TCCGCGACAAGT
AATTCCGA------------------------------------------------------------------------
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>reverse_2825
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------------------------TGCACGAAGGACTCTTTCTCC-----------------------------------
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