>input_sequence_77070
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATGTCGGCGCCGT
GGTGGGACTCCGACGAAAACCGCTCTGCGGTTGAGTACCGCGCCTATGTTGGCAACCTCCCCTGGGGCACCGATGAGCGC
TCGCTCAAGGACTTCTTC---GACTACCGCCCGCTCAACGCCGACGTGAGTGGGTTTCAGACTTTTGGTTGATGTATATG
CTCGAGGGT----GCTAGACTGTGATGCTTTTGTTGCCTGCTGGATGGATCTGTACAGTTTTCCTCGTTGTTTCCTAGGG
TTCAGATTAGATTCAGCCTGGCCGCATTGATTTTGCTTGTTAGTTGTTTGTT---GTAATTATTTGGTGAAATTTGCATC
TGCCTAACACGATCGTACTGAACGTGTTAAGATAATTTATCAGATCGTCACCGACCGGGAGACGGGCAGATCCCGCGGCT
TCGGCTTCGTCTGGTTCGACGACGAGGAGTCGTTGAGCAACGCCATCCACGGCATGAACGGCCAGGAGCTCGGCGGCCGC
ACCATCACCGTCGACAGGGCCAATCAACGCCCCCGCCGCTGGAGGAGATGA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr4D_1_TraesCS4D01G211000
CCCATTATGGGTCGCTAACTCGCTGCGCGTGTGTTTCAGCGGCAACCTGCCACGAAGAGCAGCGCATAGGAACTGCGGCC
GCCATTGCTGTGAAAAAGAGTTGTACACAATTAAAAAAATCAGGCACAAAATATAAAGGGGCCTAATAAAGCCAGACGGT
GGGAGTTGATGCGATGATAATGAGTTTGAGCAGTGATACTGAAACAATCGATGAAGGTGAACAAGAGCCTTCTACTAGTT
CTAGTGTGGCGCCGGTTGTGAAAGGCTTTCCGGACGACTTGTTGGGAGTGG---------------GGCATCTTTAACAT
GGACATAAAACCGTTCGCATATGTTTGAACCGCGGTGTCCAGATGTTTTGTGCCATCCATCACGGTCTTGTATCGGTCCG
CAAAATGGTTCGGACGCACTTTCTCCTGCAAACTAAAAATAAACGTAGAGACCTGTGCGGGGTGTTGCTCCAGTCTGATT
CGTTCAACGACAATGGCTTCACCTTTAGTGAGTCATCTTAGAGGTCCACAAAGCTGCATATTAGCGTTCAGCGATGTAGC
CGCGTCGAGCTCGGTGAGGAGGTGATCCTTCC-TTTTTTTCTTAGATGGCTGTTGCGGTGGTGCCGAAGACAGATAACAT
GCGTTTGTGTCAAGTTTGGAGATGTTTTGT--TCTTTTCAGTTTTATCATGTTCGTCCTTATTATGTGGCTGAGATATAA
ATGAGAGACATATTACCGGTAAAG---AAAAGAGAGAAGCCGAACCCGG-CATATACGTACGGGCTGCCGCATTAAACCG
CGATTAACTACGCGGGCGTTAAACCGCCGCA---------------CGAACACCCGCATAATCAAGTGCGGG--------
-----------------------CTGTCCGCTGCCCACCGTATCCTGATCTAGAAGGCTCTCTATA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATATTCGTCCTGGAGGTTCAGTAGTACAACAATCAAACGCATCACGCTATTATT
CGTCCTCTTGCAAAAGGAAACCCTCCGTTACTCTGTCGTATCACGGCTAGGGTTTATCGATAGTGCGATGTCGGCGCCGT
GGTGGGACTCCGACGAAAACCGCTCTGCGGTTGAGTACCGCGCCTATGTTGGCAACCTCCCCTGGGGCACCGATGAGCGC
TCGCTCAAGGACTTCTTC---GACTACCGCCCGCTCAACGCCGACGTGAGTGGGTTTCAGACTTTTGGTTGATGTATATG
CTCGAGGGT----GCTAGACTGTGATGCTTTTGTTGCCTGCTGGATGGATCTGTACAGTTTTCCTCGTTGTTTCCTAGGG
TTCAGATTAGATTCAGCCTGGCCGCATTGATTTTGCTTGTTAGTTGTTTGTT---GTAATTATTTGGTGAAATTTGCATC
TGCCTAACACGATCGTACTGAACGTGTTAAGATAATTTATCAGATCGTCACCGACCGGGAGACGGGCAGATCCCGCGGCT
TCGGCTTCGTCTGGTTCGACGACGAGGAGTCGTTGAGCAACGCCATCCACGGCATGAACGGCCAGGAGCTCGGCGGCCGC
ACCATCACCGTCGACAGGGCCAATCAACGCCCCCGCCGCTGGAGGAGATGAAGAACAGCTAGGAGA----TCTGCCCGCC
CGGGCATTCACGTTGTAGTGTCGGTGTCAAGTTATCAAGTCTCCCGTGATTGCTTAGTTTATGGTCGTGAAATTGAACCT
ATCGATTGTCCGTGGTGCGCATCGTTCGCTT-ATGATTGTTGAACATCTAGTCTTTACATGCATTGCAGTAAGCAAACAA
CAATGTAGCTTGTTTTCTCGAAGCCAAGCCTAATCATCTCTTAAGTTGAGAGATAACATCCCAGAGTTTTTTTTTTGCGG
GGTATCCCAGAGTTTTTCTTCTATTCGGAAC-------------------------------------------------
------------------------A----AAAAACAAAGGACTGAAACTGAACAG---AAAACAAGACGCACTGAGCCAC
TGATGATTCTTGTCCGGCTACCAAAAACTTTTTGAACAGCATCCGGCTGCAAATTAAGGATGTCGCTGCT----TTCACA
TCCGGGGTGCCGCAAGGGAGCAACGCGCCGGGCCGCAGTGGTCACCACCGGCGCGTCAGCGGTAGCAGGCCGGCAAGC--
--------------------------------------------------GACCGCCACCGAACCTTTCGTGACTGTTC-
GCAACGGCGGGGCCCTTCTTTCTTCTCTTTCTCCACGGCAGAAGCCCCTCCATCGCACGATTTGTGTCTTACTCTTGACT
AGATGATTCCCCAGGAGTTCTGGGATATTTTTTGCTAAAATTTAGAATGTGGAGGAATACACTGTGTAAAGAAAAATAGA
CTTGCTTGTGTGTCAAAAGTTCAAAACATTTCCCTTTCGTGTGGAAAACATATCTTCCTAATGTCATACAAAAGCATCCA
GAAGTAACAGTTGTGTTATATGCTATTATCTTAGTTCCCTGCGCTGCGCTAAACAACTATTCTTATTTTTAGAGGATCGG
AAAGATGACGAGGGGTAATATAGTAGTGCTATGTTGGGTTGGGGGGTTGGGAAATTATTTGGAAGTAAATGTTTCTAAGA
ACATCCAGAGGCTATTTGGTTTGGAGCCTTGAGCTGCCCTGCCAAAATATGGGTCGTTGACCAGACTTCGAGG
>chr4B_3
CATTATG-GGATCGCTAACTCGCTGCGTGTGTGTTTCAGTGGCAACCCGCCACGAAGAGCGGCGCATAGGAACTGCGGCC
GCCATTGCTGTGAAAAAGAATTGTATTCAATTTT-AAAATCTGACAAAATATACAAAGGGGTCTAATAAACCCGGACGGT
GGGAGTTGATGCGATGGTAATG-----------------------AATCGATGAGGGTGAACAAGAGCCTTCTACTAGTT
TTGGTGTGGCTCCGGTTGTGAAAGGCTTTCCCGACGACTTGTTGAGAGTTGATGTTTCCTTCTAAAGGCATCTTCAACGC
GGACCTAAAACAGTTCGCATATGTTTGGACCGCGGTGTTTAGATATTTTGTGCCATCCATCGCGGTCTTGCATCGGTCCG
TAAAATGGTTCGGTTGCACTTTCTCCTACAAACTAAAAATAAAGTAGAGGCCTT-TGCGGGGTGTTGCTCCAGTCTGATT
CGTTCAACGACAATGAATTCATCTTTAGTGAGCCATCTTGGAGGTCCGCAAAGCTGCATATTAGCGATCAGCGATGTAGC
CGCGTCAAGCTTGGTGAGGAGGTGATCCGTCA-TCTTTTTCTTAGATAACTGCTGTGGTGGTGTTCAAGACAGGTGACAG
ACGTTTGTGTCAAGCTCAGAGATATTCTGCTATCTTTTCAGTTTTGTTATGTCCGTGCTTATTACGTGGCTCAGATATGA
ATGAGACATGTATTACCGGTAGGAAGAAAAAAAGAGAAGCCGAACCCGG-CATATACGTACGGGTTGCCGCATTAAACCG
CGATTAACTACGCGGGCGTTAACCGCCACATGACCCGCTTAGACCGCGAACGCCCGCATAATCAAGTGCGGGCTGTCCGC
TTCCCTCAAAAAAAAAGTGCGGGCTGTCCGCTGCCCACCGCATCCTGATCTAGAAGGCTCTCTCTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATATTCGTCCTGGAGGTTCAATACA-----AATCTAACGCATCACGCTATTATT
AGTCTTCTTGCAAAAAGAAACCCTCCATTACTCTCTCGTATGACGGCTAGGGTTTATCGATAGTGCGATGTCGGCGCCGT
GGTGGGATTCCGACGAGGACCGCTCTGGGGTTGAGTACCGCGCCTATGTTGGCAACCTCCCGTGGGGCACCGACGAGAGC
TCGCTCAAGGACTTCTTCTCCGACTACTGCCCACTCAACGCCGACGTGAGTGGGTTTCAGATTTTTCGTTGATGCAT--G
CTCGATGGTGCTAGCTAGACTATGATTCTTTTGTTTGCTGCTGGGTGGATCTGTACAGTTTTCCTCGTTGTCTTCTAGGG
TTTAG-----ATTCAGCCTGGCCGCATTGTTTTTGCTTGTTAGTCGTTTGTTTCTGTAATTATTTGGTTTAATTTCCATC
TGTCTAATTCAATCGTACTGGACGTGTTACGATAATTTATCAGATCGTCACCGACCGGGAGACGGGCAGATCCCGCGGCT
TCGGCTTCGTCTGGTTCGACGACAAGGAGTCGTTGAGCAACGCCATCCAGGGCATGAACGGCCAGGAGCTCGGCGGCCGC
ACCATCACCGTCGACAGGGCCAATCAACGCCCCCGCCGCTGGAGGAGATGAAGAACAGCGAGGAGATCTATCTGCCCGCA
CGGGCATTCACGTTATAGTGTCGGTGTCAAGTTATCAAGTCTCCCGTGATTGCTTAGTTTATGGTCGTGAAATTGAACCT
ATCGATTGGCCGTGCTGCGTATCGTTCGCTTTATGATTGTTGAACATCTAGTCTTTACATACATTGCAGTAAGGAAAGAA
CAATCTAGCTTGTTTTCTCGAAGCCAAGCCTAATCATCTCT-AA-TTGAGAGATAAC-----------------------
---ATCCCAGCGTATTTCTTCTATTCGGAACCAACCGGAGATGTTTTATTAAGAATCGAGGCCCGGGTTAC-AAGCGTTG
AAGAATTTCAGAATTATACAAGTCAGTCAAAAAACAAAAGACTGAAACTGAACAAAAAA-AACAAGACGCACTGAGCTAC
TGACGATTCTTGTCCGGCTACCAAAAGAATTTTGGACAGCATCCGGCTGCAAATTAAGGATGTCATACGCTGCATTAACA
TCCGGGGTGAGGCAAGGGAGCAACACGCCGGGCCGCAGTGGTCACCACCGGCGCGTCAGCGGTAGCAGGCCGGCGAGAGC
ATGCGCCGTGGTCGCTGGTGTGGAACCTCCCGTATGACGTGGCTGCCGCTGACCATCACCGAACCGTTCGTGACTGTGTT
GCCACGGCGGGGCCCTTCTTTATTCTCTTTCTCCACGGCAGAAGCCCCTCCATCTCACGATTTGTGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr4A_552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GAGCTTAGTGAGGAGATGATCCATTATTTTTTTTCTTTGATGACTGCTTTGGTGGTGCCGAAGGCAAGTGACAG
GTGTTTGTGTCAAGCTCAGAGATGTTCTGTTATCTTTTTAATTTTGTCATGTCTGTCCTCATTACATGGTTCGGATATGA
ACGAGACAGGTATTACGAGT---G---AAAAAAGAGAAGCCGGACCCGGGCAGATACGTACGGGCTGCCGCATTAAACCG
CGATTAACTACGCGGGCGTTAACCG------------------CCGCGAACACCCGCATAATCAAGTGCGGGCTGTCCGC
T-------------------------------GCCCACCGCATCCTGATCTGGAAGGGTCTCTAACTCTATATCGACGCG
TTTGGTTCGGCCCCGATAACGCATTCGCTTCGCCGTATCAGGAAGCGCCGCTTCCGATTAATTTTACGCAATACGTTCAT
TGTTTGGTTGGTGCGGTCGAGTCCTGTTTTTCTAATCCCTTCCGATCGGGCGGTTTAGCTTTTTTGAAGCGATGTATCAG
GAGGCGCTGCTACGGAAAACGTCGTGCGCGAAACAAACGCCAGCTACGGTTTTGGAAGTCGGTGTAATCGGAAGCCGCAC
CTTTTTTGCGGAACCAAACGCGTCGTATATTTGTGCTGGAGG-----------------CAAACGCAGCACGCTTTTATT
TG--TTCTTGCAAAAAGAAACCCTCCGTTACTCTGTCGTATCAAGGCTAGGGTTTATCGATAGTGCGATGTCGGCGCCGT
GGTGGGATTCCGACGACGACCGCTCTGGGGTTGAGTACCGCGCCTACGTTGGCAACCTCCCCTGGGGCACCGATGAGAGC
TCGCTCAAGGA---CTTCTCCGACTACCGCCCGCTCAACGCCGACGTGAGTGGGTTTCAGATTTTTGGTTGATACAT--G
CTCGATTGTGCTAGCTAGACTATGATGCTTTTGTTGGCTGCCGGATGGATCTGTGCAGTTTTCCTCGTTGTTTTCTAGGG
TTTAGATTAGATTCAGCCTGACCGCATTGATTTTGCTTGTTAGTCGTTTGTTCCTGTAATTATCTGTTTGAATTTGTATC
TGCCTAACACGATCGTACTGTACGTGTTACGATAATTTATCAGATCGTCACCGACCGGGAGACGGGCAGATCCCGCGGCT
TCGGCTTCGTCTGGTTCGACGACAATGAGTCGCTGAGCAACGCCATCCAGGGCATGGACGGCCAGGAGCTCGGCGGCCGC
ACCATCACCGTCGACAGGGCCAATCAACGCCCCCGCCGCTGGAGGAGATGAAGAACAGCGAGGAGATCTATCTGCCCGCC
CGGGCATTCACGTTATAGTGTCGGTATCAAGTTATTAAGTCTCCCGTGATTGCTTAGTTTATGGTCGTGAAACTGAACCT
ATCGATTGTCCGTGGTGTGTATCGTTCGCTTTATGATTGTTGAACATCTAGTCTTTACATACATTGCAGTAAGCAAAGAA
CAATGTAGCTTGTTTGCTCGAAGCCAAGCCTAATCATCTCG-AAGGTGAGAGATAAC-----------------------
---ATCCCAGAGTTTTTCTTCTATTCGGAACCAACCAGAGATGTTTTATTAAGAATCGAGGCCCGGGTTACAAAGCGTTG
AAGAATTTCAGAATTATACAAGTCA----AAAAACAAAGGATTGAAACTATAAACAAAAAAACAAGACGCACTGAGCCAC
TGATGATTCTTGTCCGGCTAGCAGAAAAGTTTTGGACAGCATCCGGCTGCAAATTAAGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
-SSSS-SS--S----------------S-----------S-------S------------S-------------------
-------------------S-----SS-----SSS------S-S--S--S---S-------S--------S--S------
----------------S-----SSSSSSSSSSSSSSSSSSSSSSS---------S-------------------------
S-S-------S--------------------S------------S----S------------------------S---SS
----S------S---------------S----------SS----S----------------S--------S---------
S------------SS------------S---------------SSSSSS-S-S-S-------------------------
---------------SS----S----------S------S-------S------------------S-------------
-----------S----------------S--S----------------S---S--S-----------------S-S---S
--------------S-SS--------S------------------S------S-----------S------S------S-
------S-SS-----------SS--------S------------------------------------------------
----------------------S-SS-SSSS-------------------------------------------------
----------------------------------------S------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--SSSSSSS------------------------
S---S----------S----------------------------------------------------------------
-------S--------SS---------S-------------------------------------------------S--
-------------------------------------------------------------S------------S--SS-
-----S---------------S--------------S------------------------------------S------
--S-----------------------------------------S-----------------------SS----------
--------------------S--------S--------------------------------------------------
-----------------------S-------------------------S------------------------------
-----------------------------------------------------------S--------------------
--------------S-----------------------------------------------------------------
-------------------S----------------------------------------S----------------S--
-----------------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------SS-----S-----------------------------SSSSSS------S---
---------SS-------------S-------------------------------------------------S--S--
------------------------------------------------------SS---------S-----------SS-
--S------------------S--------------------------------S------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_272
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGTTGTGAAAGGCTTTCCG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_2546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTTCGTGACTGTTCG
CAACG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
