>input_sequence_77054
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-------------------------------------------------------ATGGAAGAGTCGGGCAAGGAGCAGT
CGCCAAACTCAAGCTCCTCCCAGTCTCAGTACAGGGGCGTGAGGAAGAGGAAATGGGGCAAGTGGGTGTCGGAGATCCGG
CAGCCCGGCACCAAGACCCGCATTTGGCTCGGCAGCTTCGAGTCGGCCGAGATGGCCGCGGTGGCGCACGACGTGGCGGC
GCTGCGGCTGCGCGGCCGGGACGCGCAGCTCAACTTCCCGGGGTCGGTGGACCGGCTGCCCCGGCCGGCGAGCTCGCACC
CGGACGACGTCCGCGCCGCGGCGGCGGAGGCGGCCGAGCTCGTGCGGGGCGAGCCAGCACTGGTGGCGCGGGGGGCAGCC
GAGTGCCCCGGGTGGGAGCTGGTGGACGGGAGGGGGAGCGACGAGGAGTTCGAGGTGGACTCGCCCAGGCTATGGGCCGA
GATGGCGGAGGCCATGCTGCTGGAGCCGCCAGCATGGGCCACGGGCGCCAGCGAGATGGACCAGGCCGCGCACTGCTGGT
CGCACGGGTCCCTCTGGGACGCCTACTAA---------------------------------------------------
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>chr2A_1_TraesCS2A01G310700
CATTCAAGAACGGATTCATCATCGATCTGACGTTCACAAACAGGTTCCGGGCTCTGACGAGGAAGAGTAGTGCATGGGAG
ACGGCGGCGCCTGGAGTACCTTGAGCTGGCTCGTGTCCAATGCCCTACTCTAGCTTGCCGGCGACCGAACCAACACTCTG
AACAGGACGAGCTGGGAGTAGAACTGAACAAAACTCCGCTCAAAGATCGCTACGTTACATGTAATAATATGTGTATGAGG
TTTCTAATTCAAGGTATCCGGATATGGAATGCATTTTTTAAGATGTGGCCGGTGACTATCCGTGGATGCACTCGGAAGCG
TCTACATATGTTTGAAAAGTTAAATTTGTTAAGTCCGGCTCTAGACGCTCTCACGCGGTTCTTTTTCAGGGTAGCATCAC
GCAGTTAACCTGGCGACGTCGGCTTGTAACCAAACTCGAAAGGATCGACGACTAATTGCACGGATCGCTTTGAGGCTTGA
ATTCCTTCTTTAAACGACAACGATATTTCTTCCTTGCAACAACCGATTTGGTGCGCGCGCGTGTGACGATGCGTCGATGC
CTATGGTCTGTTTCGCAAGTAGTTGCCTGTTTTCAGTGCACGTTTGCTCCATTACTGCTAGTGACAAGGCTAGCGAGCCT
GCTGCTAGCACCGCTAATTACTTTTGAGTGTCCTTTGCTGTCCTTCGCACCAGTGT--------ATGCATGCATGTACAC
TCGGTACACCAAGATGTGGAGTGGTCAGACTGCAACTGC---ACACGATCCATCGTCCGTCCCACAGTGTATCTGCCAGG
AAGGCATTATTATTGCGCGCCAATCATGAAAGCAAATGATGAGCTTAACATAGTAGCCAGCGTACGTATGAAGTGACACC
GGTCCTGTGGCAACAGTGCCCCCGTCACTCCCCATCTCCTATATAAGCCCACAAAGATCGCATCCATTTCTGCATTGCAT
CCCACACTCTTCGATCATCTCCGTCGCAACACGTTGGGCAAGAAGCG----ATCGATGGAAGAGTCGGGCAAGGAGCAGT
CGCCAAACTCAAGCTCCTCCCAGTCTCAGTACAGGGGCGTGAGGAAGAGGAAATGGGGCAAGTGGGTGTCGGAGATCCGG
CAGCCCGGCACCAAGACCCGCATTTGGCTCGGCAGCTTCGAGTCGGCCGAGATGGCCGCGGTGGCGCACGACGTGGCGGC
GCTGCGGCTGCGCGGCCGGGACGCGCAGCTCAACTTCCCGGGGTCGGTGGACCGGCTGCCCCGGCCGGCGAGCTCGCACC
CGGACGACGTCCGCGCCGCGGCGGCGGAGGCGGCCGAGCTCGTGCGGGGCGAGCCAGCACTGGTGGCGCGGGGGGCAGCC
GAGTGCCCCGGGTGGGAGCTGGTGGACGGGAGGGGGAGCGACGAGGAGTTCGAGGTGGACTCGCCCAGGCTATGGGCCGA
GATGGCGGAGGCCATGCTGCTGGAGCCGCCAGCATGGGCCACGGGCGCCAGCGAGATGGACCAGGCCGCGCACTGCTGGT
CGCACGGGTCCCTCTGGGACGCCTACTAAGCTCGGCCCGTGGGCCGATGTGTATGGCCGTTAATTAGGGGTACGTACTAG
TACGTGCCATTGACCTCA-TACCTCGCAACTCCTTTCTCTGGAGAGGGGTAGATGGAGTCGACGCCCAAGGTGAGGCGTT
CGAGCCTCACGGGGCTACTCAGAATTATCCTCAG-------------------TGTGTGCGTTTTCTTTTCGTTGCGTTT
GGCTTGAGATCCTTTGCGGCATCATATCGGCCTGTATCGCGTTTGTTAGTCAGCTCATTACCCGCAGATAATCCGGGATT
CTAAGTTGCTCAGGGTAGTCATCCTTTGGGCTTATTTATGGAAAAGTCATCTTGTTAGCTCGAGCTCACATTCCCCTGCC
ATGAACAGTAAATTGAAAACAACTGT--AAAAAAATCAAAAAAATATGAATTTTT-TTGTGCCAAACATTGATGAAAGTT
TTGAGTGTTTGCAAAGTTGCATTCTGAAATGACATTTGTGGAAGTTGTA-CCAAAAAAAATCAATGCTACAAAATGCTTT
TGAAGATATCATTTTTGGACCGTTCA--TTTTTTTCCACGACTTCCACGAATGTTATTCCATGATGAAACTTTGCAAGTA
CTCAAAACATTCATCAATGTTTGCCACACACAAAAAAATCAGATTAAAAAAATAGTTTCAGATTTTACAATTCACACGAG
CTCATTTGAGCTTGAGCTAAGATATTCTGCATCCCTTATTTTTGGCTATATGATTGAATAGCGGAATAAGAATCGGATCT
TCAATTCGGTGCCCGGGCTTATATGCACCCGGTGAATAGTAAAATAAGAAAATAGCAAAAAAAAAA--GGATGCAAGATG
CTTGAGTGCGGCAGGTGCATGCACAATTTCATGACTAAATGGTATTCGGAGAGCTCGCGGCAAAAAAA-GACAAAATTAG
CTCCGAACATTGTTGTTTTCAAATGTTTCTCACAGGTCTGAAATTTATCTTCTTTGCTGAGAGCTACTGAAATGTCCAAA
CTCCACGAAATTTGGCAC
>chr2D_163
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--CAGGACGAGCGGGGAGCGCAACCGGACGAAACTCCGCTCAAAGATCGCTACGTTGCATGTAATAATATGGATCCAAGG
TTTTTAATTTAAGGTATCCGGATGTGAAATGAATTTTTTAAGACGTGGCCGGTCACTATCCGCGGAC-------------
---------GTTTGAAGGGTTAAATTTGTCAAGTCCGGTTATAGATGCTCTCACGCGGTTCTTTTTCAGGGTAGCATCAC
GCAGTTAATCTGGCGACGTCGGCTTGTAACCAAACTCGAAAGGATCGACGACTAATTGCACGGATCGCTTTGAGGCGTGA
ATTCTTTCTTTAAACGACAACGATATTTCTTCATTGCAACAACCGATTTGGTGCTCCCGCGTGTGACGATGC--------
CTATGGTCTGTTTCGCAAGTAGTTGCCTGTTTTCAGTGCACTCTTGCTCCATTACTGCTGGTGACAAGGCTAGCGAGCCT
GCTGCTAGCACCGCTAATTACTTTTGGGTGTCCTTTGCTGTCCTTCGCAACAGCGT--------ATGCATGCATGTACAC
TCGGTCCACGAAGATGTGGAGCAACAGCCGTGGAGTGGTCAGACTCGATCCATCGTCCGTCCCACAGTGTATCTGCCAGG
AAGGCATTATTATTGCGCGCCAATCATGAAAGCAAATGATGAGCTTAACATAGTAGCCAGCGTACGTATGAAGTGACACC
GATCCTGTGGCAACAGTGCCCCCGTCACTCCCCATCTCCTATATAAGCCCACAAAGATCGCATCCATTTCTGCATTGCAT
CCCACACTCTTCCATCATCTCCGTCGTGACACGTTGGGCAAGAAGCG----ATCGATGGACGAGTCGGGCAAGAAGCAGT
CTCCGAACTCGAGCTCCTCCCAATCTCAATACAGGGGCGTGAGGAAGAGGAAATGGGGCAAGTGGGTGTCGGAGATCCGG
CAGCCCGGCACCAAGACCCGCATATGGCTCGGCAGCTTCGAGTCGGCCGAGATGGCGGCGGTGGCGCACGACGTGGCGGC
GCTGCGGCTGCGCGGCCGGGACGCGCAGCTCAACTTCCCGGGGTCGGTGGACCGGCTGCCCCGGCCGGCGAGCTCGCACC
CGGACGACGTCCGCGCCGCGGCGGCGGAGGCGGCCGAGCTCGTGCGGGGCGAGCCGGCGCTGGTGGCGCGGGGGGCAGCC
GAGTGCCCCTGGTGGGAGCTGGTGGGCGGGAGGGGGAGCGACGAGGAGTTCGAGGTCGACTCGCCCAAGCTATGGGCCGA
GATGGCGGAGGCCATGCTGCTGGAGCCGCCAGCGTGGGCCACGGGCGCCAGCGAGATGGACCACGCCGCGCACTGCTGGT
CGCACGGGTCCCTCTGGGACGCCTACTAAGCTCGGCCCGCGGGCCGATGTGTATGACCGTTAATTAGGGGTCCGTACG-G
CACGTGCCATTGACCTCAGTACCTCGCAACTCCTTTCTCTGGAGAGGGGTACATGGAGTCGACGTCCAACGCGAGGCGTT
CGAGCCTCACGGGGCTACTCAGAATTAGCCTATGTGTGTGCGCGAGTGTGTTATGTGTGTGTTTTCTTTTCGTTGCGTTT
GGCTTGAGATCCTTTGCGGCATCATATCGGCCTGTATCGGGTTTGTTAGTCAGCTCATTACCCGCAGATAATCCGGGATT
CTAAGTTGCTCAGGGCAGTGATCCTTTGAGCTTATTTATGGAAAAGTCATCTTCTTAGCTCCAGCTCACATGCCCCTGCC
ATGAACAGTAAATTCAAAAATAACTGTAAAAAAAATCGGAAAATTATGAATTTTT-TTGTGCGAAACATTGATGAAAGTC
TTGAGTGTTTGCAAAGTTTTATTCTGAAATGATATTTGTGGAAGTTATA-CAAAAAAAATC-GATGCTACAAAATGCTTT
TGAAGTTAACATTTTTGGACCGTTTATTTTTTTTTTCACGACTTCCACGAATGTTATTCCATGATGAAACTTTGCAAGTA
CTCAAAATATTCATCAATATTTGCCACAC---AAAAAATCAGATTAAAAAAATAGTTTCAGATTTTACAATTCACACGAG
CTCATTTGAGCTTGAGCTAAGATACTCCGCATCCCTTATTTTTGGCTATATGATTGAATAGTGGAAAAAGAATCGAATCT
TCAATTCGGTGCCCGGGCTCATATGCACCCAGTGAACAATAAAATAAGAAAGTAGCAAA--AAAAA--GGATGCAAGATG
CTTGAGTGCCGCAGGTGCGTGCAAAAATTCATGACTAAATGACATTCGAAGAGCTCGCGGCA-AAAAA-GACAAAATTAG
CTCCGAACATTGTTGTTTTCAAATGTTTCTCACAGGTCTGAAATTTGTCTTCTTTGCTGAGAGCCACTGAAATGTCCAAA
CTCCACGAAATTTGGCAC
>chr2B_371
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--------------------------------------------------TCACGCGGTTCTTTTTCAGGGTGGCATCAC
GCAGTTAATCTGGCGACGTCGGCTTGTAACCAAACTCGCAAGGATCGACGACTAATTGCACGGATCGCTTTGAGGCGTGA
ATTCCTTCTTTAAACGACAATGATATTTCTTCATTGCAACAACCGATTTGGTGCGCCCGCGTGTGACGATGC--------
GTATGGTCTGTTTCGCAAGTAGTTGCCTGTTTCCAGTGCACTTTTGCTCCATTACTGCTAGTGACAAGGCTAGCGAGCCT
GCTGCTAGCACTGCTAATTACTTTTGAGTGTCCTTTGCTGTCCTTCGCACCAGTGCATGCATGCATGCATGCATGTACAC
TCGGTCCCCGAAGATGTGGAGTGGTCAGACTGCAACGGC---ACACGATCCATCGTCCATTCCACACTGCATCTGCCAGG
AAGGCATTATTATTGCGCGCCAATCATGAAAGCAAATGATGAGCTTAACATAGTAGCCAGCGTACGTATGAAGTGACATC
GATCCTGTGGCAACAGTGCCCCCGCCATTCCCCGTCTCCTATATAAGCCCACAAAGATCGCATCCATCTCTGCATTGCAT
CCCACACTCTTCGATCATCTCCGTCGTTATACGTTGGGCAAGAAGCGTTAGATCGATGGACGAGTCGGGCAAGGAGCAGT
TGCCAAACTCAAGCTCCTCCCAGTCTCAGTACAGGGGCGTGAGGAAGAGGAAATGGGGCAAGTGGGTGTCGGAGATCCGG
CAGCCCGGCACCAAGACCCGCATCTGGCTCGGCAGCTTCGAGTCGGCCGAGATGGCCGCGGTGGCGCACGACGTGGCGGC
GCTGCGGCTGCGTGGCCGGGACGCGCAGCTCAACTTCCCGGGGTCGGTGGACCGGCTGCCCCGGCCGGCGAACTCGCACC
CGGACGACGTCCGCGCCGCGGCGGCGGAGGCGGCCGAGCTCGTGCGGGGCGAGCCGGCGCTGGTGGCGCGGGGGCAAGGC
GAGTGCCCCGGGTGGGAGCTGGTGGGCGGGAGAGGGAGCGACGAGGAGTTCGAGGTGGACTCGCCCAGGCTATGGGCCGA
GATGGCGGAGGCCATGCTGCTGGAGCCGCCAGCATGGGCCACGGGCGCCAGCGAGATGGACCAGGCCGCGCACTGCTGGT
CGCACGGGTCCCTCTGGGACGCCTACTAAGCTCGGCCCGCGGGCCGATGTGTATGGCCGTTAATTAGGGGTACGTACG-G
TACGTGCCATTGACCTCAGTACCTCGCAACTCCTTTCTCTGGAGAGGGGTACATGGAGTCGACGCCCAACGTGAGGCGTT
CGAGCCTCACGGGGCTACTCAGAATTGGCCTCGGTGTGTGCGCGAGTGTGTTATGTGTGTGTTTTCTTTTCGTTGCGTTT
GGCTTGAGATCCTTTGCGGCATCATATCGGCCTGTATCGGGTTTGTTAGTCAGCTCATTACCCGCAGATAATCCGGGATT
CTAAGTTACTCATGGTAGTGATCCTTTGAGCTTATTTATGGGAAAGTCATCTTCTTAGCTCGAGCTCACATGCCCCTACC
A------------------------T--AAAAAAATCAAAAAGATATGAATTTTTGTTGTGCTAAACATTTATGAAAGTT
TTGAGTGC-TGCAAAGTTTCATTCTGAAATGACATTTGTGGAAGTTGTACCAAAAAAAATT-AATGCTACAAAATGCTTT
TGAAAGTAGTATTTTTGAACCATTCA--TTTTTTTCCACGACTTCCATGAATGTTATTCCATGATGAAACTTTGCAAGCA
CTCAAAAAATTCATCAATGTTTGCCACAC---AAAAAA--------------TAGTTTCAGATTTTACAATTCACTCGAG
CTCATTTGAGCTCGAGCAAAGATACTCCGCATCCCTTATTTATGGCTATATGATTGAATAGCGGAAAAAGAATCAGATCT
TCAATTCGGTGGCCAGGCTCATATGCACCCGGTGAACAGTAAAATAAGAAAATAGCAAA--AGAAATTGGATGCAAGATG
CTTGAGTGTGGCAGGCACGTGCGAAATTTCATGACTAAATGACATTCGAGGAGCTCGCGGCA-AAAAAAGACAAAATTAG
CTCCAAACAATGTTGTTTTCAAATGTTTCTCATAGGTCTGAAATTTGTATTTTTTGCTGAGTGCTACTGAAATGTTCAAA
CTCCACGAAGTTTGGCAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------S-----SSS---S-S--S--------------------------S--------------SS-SSS---
---S-----S-------------S--S----S-----------S---------S--------S---SSSSSSSSSSSSSS
SSSSSSSSS-------SS-----------S--------S-S----S----------------------------------
--------S-------------------------------------------------------------------S---
--------------------------------S-----------------------S---------------SSSSSSSS
-----------------------------------------S--------------------------------------
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-----S---S--------------------------S-------------------------------------------
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-S------------------------------------------------------------------------------
--------------------------SS--------------------------------S-------------------
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-----------------------S--------------------------------------------------------
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-------------------------------------------------------S--S---------------------
-------------------------S------------------------------------------------------
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---------------------------------------S-------------------------------------SS-
---------------------------------------------------S-----------------S----------
---------------------------S----S--------------------------S--------------------
---------------------------------------S----------------------------------------
-------------------S--------S------------------------S-----------------S--------
--------------S----SS-SSS-------------------------------------S-----------------
------------------S--------------------------------S-------S-S------------------
-----S--S-----------------------------------------------------------------------
-------S---------------------SSS------------------------------------------------
------------------------S--S--------------------------------------S-------------
-------------------S----------------S----------------------SS-------------------
------------------S----S-----------------SS-----S-------------S-----------------
----------------------------------------------S---------------------------------
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>forward_988
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--------CTTCGATCATCTCCGTCGCA----------------------------------------------------
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>reverse_1912
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-----------------------------------------------------------------------TCCCCTGCC
ATGAACAGTAA---------------------------------------------------------------------
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