>input_sequence_77033
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGAAGAATGGCAGCCACCAACCAAGCCCTCTACACAAGG
AAATTTATTGGGACATAAGTGAGGACTTCTTCGACTCCAGAAACCCTAGAAGCACAGATTACTCATCTGTAGATCTCTCA
TCTAGATCGTCCACGCCCACATTCGAGGAGTTGCCTTCTAACTCGCCGGACATGCCATTGTGCACCCCATTATCACTTGT
CGATGATATAATCTCACATAAGCAAGAGCAGGGTTATTACTGGCCACACGAGGGCCCAAATCTTGCTAAAACTTGTGCCT
CGTGTCCATCTGGTAATCTAAGGTGACGTCCCACCGCCGTTGAAATCCACGTACGTGCATCGTACCGCTGC-AGATACAT
TTCGAAGCACCGTCGACAAAAGGTAGAGCTCGATGGATCTAAAAATTCCATCCCGC--------CCGCGTTTACAATGCC
ATGTAAAACAACCCCCAGCCTCTAAACATAAAAACCACAACCTAGTTTTTTAAAATTACATTCTTGACGCTTCAGGGGTA
GAAGAGGTACAAGGAATCAGTTAG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>chr3A_1_TraesCS3A01G145400
TCGATCTATGCCAACTCAACAAGCACCATCAGAGACACCTGTAGAGCACCTTTATAATCACCCAGTTACGTTGTGACGTT
TGGTAGCACACAAAGTGTTCCTCCGGTACTCAGAAGTTGCATAATCTCATAGTCATAGGAACATGTATAAGTCATGAAGA
AAGCAATAGCAACAAACTAAACGATCATTGTGCTAAGCTAACGGATGGGTCAAGTCAATCACATCATTCTCTAATGATGT
GATGTGATCCCGTTAATCAAATGACAACTCATGTCTATGGTTAGGAAACATAACCATCATTGATTCAACGAGCTAGTCAA
GTAGAGGCAAACTAGTGACACTCTGTTTGTCTATGTATTCACACATGTACTAAGTTTTTGGTTAATACAATTCTAGCATG
AATAATAAACATTTATCATGATATAAGGAAATATAAATAACACCTTTATTATTGCCTCTATGGCATATTTCCTTCAAGTC
GGCCCACTAGGCCAGCTCAGGACCCTCGGGCCGCTATACAACCTCGGTCTCTAGCTAGGTCTTTGGGCCCTCCAGAAGGA
AAGAACCAATATCCTTGTCATGCAAGGCAAGGAGGCTGGATCATCATGGAAGCCTTCAAACTGCCCTAGATACGAAGTAG
GACTATGTAACCCTAGCCCTTGACGCCCTTTATAAGTCATGTAGGGCTAGTAGATCGGCACATCAATCTTCACCCTTCGG
TATACCTACGATCATTACGATCTCCCTTATTGTCCTTGTACCCTATCCAATCAATACAATAAGAGCACGAATAGGATTTT
CCCTCAAGTGCGAGGGCGTGAACCTGGGTAATCTCGCTTCCTATTTTCCCTCTGGACTTTCCGGCTAGTCGCGGTATCCT
ACCAACAGGTCTGCCGGAATCTATACCAACACTTAGATTTGCCACCTCTGGTTTTCTTAAGTGAACCCTGCGACTATCAA
ATATGGAGGAGTACAGGATGTGTGTAGCAAGAAGATCAAGATGAAGAATGGCAGCCACCAACCAAGCCCTCTACACAAGG
AAATTTATTGGGACATAAGTGAGGACTTCTTCGACTCCAGAAACCCTAGAAGCACAGATTACTCATCTGTAGATCTCTCA
TCTAGATCGTCCACGCCCACATTCGAGGAGTTGCCTTCTAACTCGCCGGACATGCCATTGTGCACCCCATTATCACTTGT
CGATGATATAATCTCACATAAGCAAGAGCAGGGTTATTACTGGCCACACGAGGGCCCAAATCTTGCTAAAACTTGTGCCT
CGTGTCCATCTGGTAATCTAAGGTGACGTCCCACCGCCGTTGAAATCCACGTACGTGCATCGTACCGCTGC-AGATACAT
TTCGAAGCACCGTCGACAAAAGGTAGAGCTCGATGGATCTAAAAATTCCATCCCGC--------CCGCGTTTACAATGCC
ATGTAAAACAACCCCCAGCCTCTAAACATAAAAACCACAACCTAGTTTTTTAAAATTACATTCTTGACGCTTCAGGGGTA
GAAGAGGTACAAGGAATCAGTTAGAGCGGTCC------TGATTTTTATATTGGCAGTTTTTGTAACAAAAGGTGAGAACA
TGAAAACTGCCAGAATCGTTTTGAGACGCTATTAAAGGATCTTCCGCAATAGTGCACCATGCAGCAAGTACGAGCACTGT
CGTGTGAACCCGGCCTCACATGTCATCTGCATTACAACATCATGCAGTACCGCACAGGATCTCAGCCCGGCCGATGGCGA
TGAACCTCAATCAAAAGAGAAAAGGAGATACATGTTCGATTGGAGT-CAGATTCAAGCATCTCCCATATCGGACAAGGTC
GCATCTGCAATCCTTCCGGAGCGTCAATCCAACGAACCAGAAGGAAGGAAAGAGATTTTTTGCCTGCCT-----------
-GATCTTGCCACAGGGGACCGCCTTGACTGACACACCAACCAAATCGTTGCACAGCCGCACTGTTCCCCAACGGTTGTCG
CCGCACTGTTTCAGCCACGCACGCACGCGCCCTCCGAGGACGGATGGGCTCCAACAGCGACGTCTCCCACCCAGGGGCTC
CCGGTGGAGTCATGTTTATCCCCACGACCATGAGCCGAGCAAGCGAGCGAGCTCCG----GAGTCCAGACACCGAGCGTC
GCTAGAGGATGGTGATGCAACCAACCACTGAATTTGTCTTCCGCTCCGCATGCGGCCACTCCGGCGTGTTTGTGTGTGCT
TCGCTGGCTCACACAAACCGCCTGTTCGTGGGTTGGTCCGGT-----TTGGTTTGGTTTGTCCTGCGAACTGAAAGATGA
TTGTTGGGCTATATGTGCTACGGTTCCCTCTGCTAACAACGTATATATTTTTTCGAATACGCACGAATGTGCGTATCATA
TATTATAGAAAAAAGGATGAAGAACCCTTCACAATTATACTCCCTCCGTTTCAAATTACTTGTCGCAGAAATGAATGTAT
CTAAAACTAAAATACATCTAAATACATCCATACCTGCGACAAGTAATTCGGAACGGAGAAAGTATTACAACGCGGATTAC
AAGGCGTTTCAT
>chr3D_867
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGTCGCGGTATCCT
ACCAACGGGTCTACCGGAATCTACACCAACACTTAGATTTGCCACCTTTGGTTTTCTTGAGTGAACCGTGCAACTATCAA
ATATGGAGGAGTACAGGATGTGTGCAGCAAGAAGATCAACATGAAGAATGGCGGCCACCGACGAAACT-TCTACATAAGG
ACATTTATTGGGACACAAGGGAGGACTTGTTCGACTCCAGAAACCCTAGAAGCATAGATTACTCATCTATAGATCCCTCA
TCTAGATCGTCCACGCCCACATTCGAGGACTTGCCTCCCAACTTGCCGGACATGCCATTGTACACCGCATTGTCACTTGT
CGATGATATA--CTCACATAAGCAAGAGTTGGGTTATTACTGGCCACGTGAGGGCCCAAATCTCGGTAAAACTTGTGCCT
CGTGTTCATCTGGTAATCTAAGGTGACGTCCCACTGCCATATTAAACCACATACGTGCATCGTATTGCTGTTAGATACAC
TTCGAAGCACCGTCGACAAGAGGAAGAGCTCGATGGATCTGGATGTTCCATCCTGCCATAACTGCCGCGTTTACAATGCC
ACGTAAAACAACCCCCAACCTCTAAACATAAACACCACAACCTAGTTTTTAG-AATTACACTCTAGACGTTTCAGGGATA
GAAGAGGTACAAGGAATCAGTTAGAGCGGTTTGTCCCGTGATTTTTACATTGGCAGTTTTTGTAACAAGAGGTGGGAATA
TGGAAATCGTCAGAATTGTTTTGAAACACTATTAAAGAATCTTTCACAGTAGCCCACCATGCAGTACGGT----CACTGC
CGTGTGGACCCGGCTCCACATGTCATCGGCACTATAGCATCATGCAGTACCACATAGGATCTCAACCCGGCCGATGGCGA
TGGACCTCAACCAAAAGAGAAAAGGAGATACATGTTCCATTGGAGT-CAGATTCAAGCATCACCCATATCGGACAAGGTC
GCATCTGAAATCCTTCCGGAGCGTCAATCCAACAAACCAGAAGGAAGGAAAGAGATTTTTTGCCTGCCTCATCAGACGCC
TGATCTTGCCACAGGGGACCGCCTTGACCGGCACACCAACCAAATCGTTGCATAGCCGCACTGTTCCCCAACGGTTGTCG
CCGCACTGTTTCAGCCACGCACGCACACGCCC-------------GGGCTCCAACAGCGACGTCTCCCACCCAGCGGCTC
ACGGTGGAGTCATGTTTATCCCCATGACCATGAGCCGAGCA----ACCGAGCTCCAGAGAGAGTCCAGACACCGAGCGTC
GCTAGAGGATGGTGATGCAACCAACCACTGAATCTGTCTTCCACTCCGCATGCGGCCACTCCGGCGTGTTTGTGTGTGCC
TCGCTGGCTCACACAAGTCGCCTGTTCGTGGGTTGGTCTGGT-----CTGGTTTGGTTTGTCCTGTAAACTGAAAGATGA
TTGTTGGACTATATGTGCTACTGCTCCCTCTGCTAATGGA-TATTTTTTTTCTCGAATACTCACGAGTGTGTGTATTATA
TATTATAAAAGAAAGGATGAAGAGCCCCCCACAATTAT------------------------------------------
--------------------------------------------------------------------------------
------------
>chr3B_1736
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CCGATGGCGA
TGGAGCTCGATCAAAAGAGAAAAGGAGATACATGATCCATTCGAGTGCAGATTCAAGCAACTCCCATATTGGACAAGGTC
GCATCTGAAACCCTTCCGGAGCGTCAATCCAACAAACCAGGAGGGAGAAAAGAGATTTTTTGCCTGCCTCATCACACGCC
TGATCTTGCCACAGGGGACCGCCTTGACTGACACACCAACCAAATCGTTGCATAGCCGCACTGTTTCCCAACGGTTGTCG
CCGCACTGTTTCAGCTACGCACGCACACGCCCTCCGAGGACGGATGGGCTCCAACAGCGACGTCTCCCAACCAAGGGCTC
CCGGTGGAGCCATGTTTATCCCCATGACCATGAGCCGAGCA----AGCGAGCTCCG----GAGTCCAGACACCGAGCGTC
ACTAGAGGATGGTGATGCAACCAACCACTGAATCTGTCTTCCACTCTGCATGCGGCCACTCCGGTGTGTTTGTGTGTGCC
TCGCTGGCACACACAAACCGCCTGTTCGTGGGTTGGTCTGGTTTGGTTTGGTTTGGTTTGTGCTGCCAACTGAAAGATGA
GTGTTGGACTATAGGTGCTACTGCTCCCTCTGCT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
------S-----S----------S-----------------------S----------S--------S---S--------
------------------------S--------------S------------S------S--S--S-SS------S----
-S-------------S---S--------S-------------------------S-------------S------S----
-----------------------------S------S-S----S-----------------S----S----S--------
----------SS----------------SS-----------------SS--------------S-S--------------
-----S----------------------------S---S-SSS--S----S-------------SS----S--------S
-------------------S---S----------------SS-SS--------S--------------------------
-S---------------S--------------S-----------------SSS-------S---S----S-------S--
------------------------------SS---------------S--------------------S-----S---S-
--S---SS-S------S-------S--S---------S-----S-S--S---SS----------S-S-SSSSSS-----S
------S-------SS-----------S---S--S-S--------------S--S---------S---------------
--S----------------------------------S------------------------------------------
-------S-------------------------S----------------------------------------------
----------------------------------------------------S---------------------------
--------------------------S-----------------------------------------------------
------------------------S----------------SSSS-----------------------------------
---------------------------------S--------S------------------------------------S
--------------------------------------S---------------------------S-------------
-------S-------------S-S------------SSSSS---S-S----S--------S-----S----S----S---
-------S--S------------S---SS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_551
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TAGCTAGGTCTTTGGGCCCT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_1360
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TTCGAAGCACCGTCGACAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1020
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGAAGAATGGCAGCCACCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCGGATTAC
AAGGCGTTTCA-
