>input_sequence_77030
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-------------------------------------------------ATGATGAAGGGGGCCGGCGCCATGAGCACGA
TGAAGCCGCCGTCATCGCCCTTGTACTACGTCCACGAGGCGGACGGCCACGGCCACCACTACCTCGAGGAGTGCTCCCTC
TGCGGCAAGTCCCTCTCCGGCGACATCTTCATGTACAGGTCCGTCAATCGGCCAGGCGTTCAGTCCCAGCTGCAATGCGA
TTATGCGACCATCTTGTCTGGGACTCTGGATACGTGACTACGTACGTGTGTTGTGCAGGGGTGACACGCCGTTCTGCAGC
GAGGAGTGCAGGCATCAGCAGATCGAGGTGGACAGGGCGAGGCACCGGCGGAAGAAGCACGCGGCGGCGCACGCGGTGTC
GGCGGCGCGGAAGGAGCAGCACCGGCACCACCACCACCACCACCACCACCATCATCATCACCGTCAGCACCAGCACCAGC
ACCAGCCGCATCAGCCGCCGCCGGAGCCGCGGACGGCCATGGTGGGCTCCGCCCCGTGGGCCGACGCCGGGTTCGCCGCG
AGGAGCCCCGCGTTGCGCGTGTGA--------------------------------------------------------
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>chr2B_1_TraesCS2B01G476800
ACGGCGTGTTGCTGTGGCACCGGTTAATGTCTCGGCGTTGGTCGCCGTGAACCAGATGCTACGGCGTGTCACTGTGCCAG
AGGTTAATGTCTCGGCGTTGGACTGGCCTGGAGTGTTGTTTTCTTCAAGGAGGAGGATGAGGACGACGACGGCGAAGACG
AGAGATTTGAACGGTAAACCGGGTGCTTGCTTACAATGGTTTTAATGGCGGGCCGCTTTCGACGACGACGGACGCTCTTG
TCGTGCTCTGAGCTAAAAGGACGCCTGCGAAGGCGACAAGAGCTGGTGCTCTCTTTTTTCTCCCACGGGGGCGGGAGGGA
TGTGCTCATTCCGCGCTGTTAAGACAATGAC-CCCCGATGACATATGTACACGGGTT-GCATAATTTAGGTGCAACTTCG
CAGGAAAACAAAACAAATAATA-TGGGAGGTGCTGTCATT----TCCTTGCTATCATATTGCATCTGAATTGGTCCAAGC
AAGACCGTATTCAGTCCAGTGCAGTGCGTCAATGGGTGCAGACTATTTCAGCACATGTCCGCTGGATACAGTGGTAAACA
CATGGATGATGGATCATGTTTATCGAACCCAAGTTATG-AAGCATCTTGTACAATCTAAACAGCAAATGGCTGTTAAGAG
TAAGAATACTGTACCAATGGAGAAGTATTATCCGATTCATTTCTCTGCGATTTACCATGTGCAAAGGTCGATGCAGAGAG
TGGTTCTTGGTGCAGAATCGATCGTTCAGGACCGTTTCCATCAGACCAAAAACAA-AAAAATGTAAAGCTCCGGTTCCTT
GCCTTTGGCTTCTATTCATGGCACTGCTCTCCTCCGGTGTGAATTAGCAGCCTCTCAACGTTCGTCGGAGGCTAAAAATG
GAGCTGGGCCGTGCCCTATTTGTGCACACCCCCCGGAAGACGGCAAGCCAGCCGAGCCTCCTTGACATTTAGTGCCATGT
CAAGGCGGCATTGCTCCCAATTCTAAGGCTGTTCGCCGCCGCAGGCAGCATGATGAAGGGGGCCGGCGCCATGAGCACGA
TGAAGCCGCCGTCATCGCCCTTGTACTACGTCCACGAGGCGGACGGCCACGGCCACCACTACCTCGAGGAGTGCTCCCTC
TGCGGCAAGTCCCTCTCCGGCGACATCTTCATGTACAGGTCCGTCAATCGGCCAGGCGTTCAGTCCCAGCTGCAATGCGA
TTATGCGACCATCTTGTCTGGGACTCTGGATACGTGACTACGTACGTGTGTTGTGCAGGGGTGACACGCCGTTCTGCAGC
GAGGAGTGCAGGCATCAGCAGATCGAGGTGGACAGGGCGAGGCACCGGCGGAAGAAGCACGCGGCGGCGCACGCGGTGTC
GGCGGCGCGGAAGGAGCAGCACCGGCACCACCACCACCACCACCACCACCATCATCATCACCGTCAGCACCAGCACCAGC
ACCAGCCGCATCAGCCGCCGCCGGAGCCGCGGACGGCCATGGTGGGCTCCGCCCCGTGGGCCGACGCCGGGTTCGCCGCG
AGGAGCCCCGCGTTGCGCGTGTGACGCTCCCATCAAACCGCACCCGATCTTCGGCGACCTCAGTCTGGCACACGTACGTA
CAGTACAGGACGACGGACATATACGTACACGTACTCATACGTCTACGACTACACGCGCCAGCATACGGGTTTAGGGACCG
GTTGCAT----ATACTAGTGGTGTACGTACGTACACGCCTGATCGAGGGTCCCGTTGTTCCACGGGCGGCTGGACATGGA
GGTTTTTTCACAAATAGTGTGTCCCGATCGAGGTTAGAACTTTAGAGCCACGAGAGTGCGAGCCATTGTTGCATGCAATG
CAA-----TGCATGGGCTCCCTCTCCATCTTTCTCGCCCCAGATTAACTTGGCTGTTTGTTCTGCTTTTGTGGAATGGGA
TTGATTTTCCGTACCAAACGCTCTAGATGTAAATCTTGTTGTTACTTTGATCAATA-TATGTGTTTTCTTGTACACGTTC
CTGAACC-CTGAATGGAAGTGCAACGAGACAGAGAAAGTGTGGCTGCATGATACTACTAGCATGTAGGAAAAACCGAACA
TAATAG----TCAGGTTCAGAGTTCAGAGTGGTGATGCATCGAAGGTTCAGAGCTTCTTGCTCACTGTTTCTGTAGCAGC
GCCGATTCCGGAGTGGATTTGACAGTGTCATCGCATCGCCAAGGATGGCGACGT--------GAGACATATTTTAGTGCG
CATACTTGCGGACCAAGGCGATCTCGATTCACTATGAAAGATTAGTTCTGTAATCAAGTATCCCAAT---ACTCCGAG-A
CGAATCAAAATTGGACGGCCAATGGAGTCACTCAGCGG------------CATAAACTATGCCGGTCTAGCTTCTTTTAA
AAGTCACCCGAGATGCGTAGGATCGGATGCCCCCACTAATATTGTA----------------------------------
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---------------------------------------------ACGAATGCAATCGATCCCATAGATCGTGTGCAAGA
TTTCTTGCCTGGTTTCCCGGCATCTTCTTCGCGACGCCCGACAAGCACAACGGGAAGTGCATATTCCCGCGAGCAATTCA
TTCACCTTTTCTCAGCCAGCAT
>chr2D_1
ACGGCGTGTCACTGTGGCACCGGTTATTGTCTCGGCGTTGGTTGCCGTGAACGAGATGCTACGGCGTGTCACTGTGGCAC
CGGTTGATGTCCCGGCCTTGGACTGGCCTGGAGTGTTGTTTTCTC---GGAGGAGGAGGAGGGCGACGACGGCGAAGACG
AGAGATTTGAACGGTAAACCGGGGGCTTGCTTACAATGGTTTTAATGGCGGGCCGCTTTCGACGACGACGGGCGCTCTTG
TCGTGCTCTGACCTAAAAGGACGCCTGCGAAGGCGACAAGAGCTG-TGCTCTTTTTTCTCCCCCACGGGGGCGGGAGGGA
TGTGCTCATTCCGCGCTGTCAAGACAACGACACCCCGGTGACATATGTACACGGGTTTGCATAATTTACCTGCAACTTGG
CAGAAAACAAAACCAATACTGTGTGGGAGGTGCTGTCATTCATTTCCCTGCTGTCATTTTGCATCTGAATTGGTCCAAGC
AAGAACGTATTCAGTCTAGTGCAGTGCGTCAATGGGTGCAGACTATTTCAGCACATGTCCGCTGGGTACGGTGGTAAAGA
CATGGG---TGGATCACGTTTATCAAACCCAAGTAATTTAAGCATCTT--------------------------------
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>chr2D_726
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-------------AGAATCGATCGTTTAGGACCATTTCCATCAGACCAAAAACAACAAAAATGTATAGCTCCGGTTCCTT
GCCTTTGGCTTCTATTCATGGCTCTGCTCTCCTCCGGTGTGAATTTGCAGCCTCTCGTCGTTCGTGGGAGGCTAAAAATG
GAGTTGAGCCGTGCCCTATTTGTGCACACCCCCCGGAAGACGGCAAGCCAGCCGAGCCTCCTTGACATTTAGTGCCATGT
CAAGGCGGCATTGCTCCCAATTCTAAGGCTGTTCGCCGCCGCAGGCAGCATGATGAAGGGGGCCGGCGCCATGAGCACGA
TGAAGCCGCCGTCATCGCCCATGTTCTGCGTCCGCGAGGCGGACGGCCACGGCCACCACTTCCTCGAGGAGTGCTCCCTC
TGCGGCAAGTCCCTCTCCGGCGACATCTTCATGTACAGGTCCGTC------------GTTCTGTCCCAGCTGCATGCA--
--ACGCGACCATCTTGTCTGTGTGCGTGACTACGTGTGTGT--AC-TGTGTTGTGCAGAGGTGACACGCCGTTCTGCAGC
GAGGAGTGCAGGCATCAGCAGATCGAGGTGGACAGGGCGAGGCACCGGCGGAAGAAGCACGCGGCGGCGCACGCGGTGTC
GGCGGCGCGGAAGGAGCAGCACCGGCAGCACCACCATCACCACCACCACCATCACCATCACCGTCAGCACCAGCA-----
----GCCGGAGCCGGAGCCGC---AGCCGCGGGCGGCTATGGTGGGCTCCGCCCCGTGGGCCGACGCCGGGTTCGCCGCG
AGGAGCCCCGCGTTGCGCGTGTGACGCTCTGATTAGACTGCACCCGATCTCCGGCGACCTCAGTTTGGCACACGTACGTA
CAGTACAGGACGACGGACATATAC----ACGTACTCACACGTCTATG------------ACCATACGGGTTTAGGGACCG
GTTGCATGCATATATTAGTGGT----GTACGTACACGCCTGATCTAGGGTCCCGTTGTTCCACGGGCGGCTGGACATGGA
GGTTTTTTCACAAATAGTGTGTCCCGATCGAGGTTAGAACTTTAGAGCCACGAGAGTGTGAGCCATTGTTGCATGCAATG
CATCATGGTGCATGGGCTCCCTCTCCATTCTTCTCGCCCCAGATTAAGTTGGCTGTTTGTTCTGCTTTTGTGGAATGGGA
TTGATTTTCCGTACCAAACGCTCTAGATGTAAATCTTGTTGTTACTTTGATCAATACTACATGTTTTTGTGCATGTGTTT
CTGAACATTTGGATGAAAGTGCAACGAAACAGAGATAGTGTGGCTGGCTGCATG----AT-ATGTAGGAAAAACTGAACA
AAAATCTGGTTCAGATTCAGAGTTCAGAGTGGTGATGCATCGAAGGTTCAGAGCTTCTTGCTCACTGTATCTGTGGCAGC
GCCGAGTCCGGCGCGGATTTGACAGTGTCATCGCAACCTCAAGGATGGCGACGTGAGAGTGTGAGACATATTTTAGTGCG
CATACTTGCTGACCAGGGCGATCTCAAATCAACACGAAAGATTAGTTCAGTGATCAAGTATCACAAC---ACTACTACTA
CGAATCAAAATTGGACGGCCAATGGAGTCACACAGCGGTGCAAAGACACGCATAAACTATGCCGGTCTAGCTTCTTTTAA
AAGTCACCCGAGATGCGCAGGATTGGATG--CCCACTAATATTGTA----------------------------------
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---------------------------------------------ACGAATGCAATCGATCTCATAGATCTTGTGCAAGA
TTTCTTGCCTGATTTCCCGGCATCTTCTTCGCCACGCCCGACAAGCAGAACGGGCAGTGCATATTCCCGCGAGCAATTCA
TTCACCTTTTCTCAGCCAG---
>chr2A_726
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-------------AGAATCGATCGTTCAGGACCATTTCCATCAGACCAAAAACAACGAAAATGTATAGCTCCGGTTTCTT
GCTTCC-GCTTCTATTCATGGCTCTGCTCTCCTCCGGTGTGAGTTTGCAGCCTCTCGTCGTTCGTTGGGGGCTAAAAATG
GAGTTGGGCCGTGCCCTATTTGTGCACACCCCCCGGAAGACGGCAAGCCAGCCGAGCCTCCTTGACATTTAGCGCCATGT
CAAGGCGGCATTGCTCCCAATTCTAAGGCTGTTCGCCGCCGCAGGCAA-ATGATGAAGGGGGCCGGCGCCATGAGCACGA
TGAAGCCGCCGTCATCGCCCTTGCTC---------------GACGGCCACGGCCACCACTTCCTCGAGGAGTGCTCCCTC
TGCGGCAAGTCCCTCTCCGGCGACATCTTCATGTACAGGTCCGTC------------GTTCTACCCCAGCTGCATGCA--
--AAGCGACCATCTTGTATGTGTGCGTGACTACGTGTGTGTGTAC-TGTGTTGTGCAGGGGTGACACGCCGTTCTGCAGC
GAGGAGTGCAGGCATCAGCAGATCGAGGTGGACAGGGCGAGGCACCGGCGGAAGAAGCACGCGGCGGCGCACGCGGTGTC
GGCGGCGCGGAAGGTGCAGCACCGGCACCACCACCA---CCACCACCACCATCACCATCACCGTCAGCACCAGCA-----
----GCCGGGGCCGGAGCCGC---AGCCGCGGGCGGCCATGGTGGGCTCCGCCCCGTGGGCCGACGCCGGGTTCGCCGCG
AGGAGCCCCGCGTTGCGCGTGTGACGCCCCGATCAGACCGCACCCTATCTCCCGCGACCTCAGTTTGGCACACGTACGTA
CAGTATAGGACGACGGACATATACGTACACGTACTCATACGTCTACGGCTACACGCGCCACCATACGGGTTTAGGGACCG
GTTGCAT----ATATTAGTGGTGTATGTACGTACACGGCTGATCTAGGGTCCCATTGTTCCACGGGCGGCTGGACATGGA
GGTTTTTTCACAAATAGTGTGTCCCGGTCGAGGTTAGAACTTTAGAGCCACGAGAGCGTGAGCCATTGTTGCATGCAATG
CAA-----TGCATGGGCTCCCTCTCCATTTCTCTCGCCCCAGATTAACTTGGCTGTTTGTTCTGCTATTGTGGAATGGGA
TTGATATTCCGTGCCAAACGCTCTAGATGTAAATCTTGTTGTTACTTTGATCAATACTACATGTTTGTTGTACAAAGTTC
CCGAACC-TTGGATGAAAGTGCAACGACACTGAGAACGTGTGGCTGCACGATACTACTAT-AGGTAGGAAAAACTGAAGA
GAAATCAGGTTCAGATTCAGAGTTCAGAGTGGTTATGCATCGAAGGTTCAGAA---------CACTGTATCTATAGCAGC
GCCGGGTCCGGCGCGGATTTGACAGTGTCATCGCACCCTCAAGGATGGCGACGTGAGA--------CATATTTTAGTGCG
CACACTTGCTAACCAAGGCGATCTCAAATCAACATGAAAGATTAGTTCAGTGATCAAGTATCACAACACTACTACGACTA
CGAATCAAAATTGGGCGGCCAATGGAGTCACACAGCGGTGCAATGACGGGCATAAACTATGCCGGTCTAGCTTCTTTTAA
AAGTCACCCGAGATGCGTGGGATCGGATGCCCCCACTAATATTGTACTCCCTCCGTTCTAAAATATAGCGCGCCCACGCT
TTTCGAGGTTCAACTTTGACCATAAATTTAACCCACGAGACCGACTGCGGCGGGATCAAAAATTATGTAATTAAAAACAT
TTTTTGAATACGAATTCATTGGTATAATTTTTTCGCCCGCCGCAGTCGGTCTTGTTGATTAAATTAATGGTCAAAGTTGA
AGCACGGAAACCGAGGACGCGCTATATTTTGGAACGGAGGGAGTAACGAACGCAGTCGATCCCATAGATCTTGTGCAAGA
TTTCTTGCCTGGTTTCCCGGCATCTTCTTCGCTACGCCCGACAAGCAGAACGGGCAGTGCATATTCCCGCGAGCAATTCA
GTCACCTTTTCCCAGCCAGCAT
>SNPs
---------SS---------------S---------------S---------S-----------------------S--S
S----S-----S----S---------------------------SSSS---------S----S-----------------
-----------------------S-----------------------------------------------S--------
-----------S---------------------------------S------S----S--S-------------------
-------------------S-------S---------S------------------------------SS--------S-
---S---SS---S---SSSSSS-------------------------S----S----S----------------------
----S-----------S------------------------------------------------S---S--------S-
-----SSSS-------S-------S---------S--S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS--------------------S-------------------------------S--------------
----------------------S----------------------S----------SS-------S--------------
---S----------------------------------------------------------------------------
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------------------------S--S-----S--------------------------S-------------------
---------------------------------------------SSSSSSSSSSSS----S------------SSSSSS
SS-S----------------S-SSSS--SS------SS-SS----S----------------------------------
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------------------------------------S-----------------S--------------------SSSSS
SSSS----S-S-S-SS-----SSS--------S-----------------------------------------------
------------------------------S----S--------------S-------------S---------------
-----------------------------------------------S------------S-------------------
--------------S----------S------------------S-----------------------------------
----------------------------------------------------------S---------------------
----------------------------S---------------------------------------------------
-----------------------------------------------------------SS------S---S-S-S----
--------S--S---S-----------S-------------------------------SS-------------S-----
S--SSS--------S-----------------------------------------------------S-----------
-----S-----S-S---------------------S-SS-----------------------------------------
---------S---------------S-S---SS---------------S--S----------S---S------S---S--
-------------------------------S------------------------------------------------
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----------------------------------------------------------------------S---------
--------------------------------S--------------S------S-------------------------
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>forward_714
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------------------------------------------------------CCATGTGCAAAGGTCGATGC------
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>reverse_1585
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----------------------------------------------------------------CTGGCACACGTACGTA
CAGT----------------------------------------------------------------------------
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