>input_sequence_77016
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----------------------------------------------------GGAAGGCAAATCCTGACATCTCCTCCCC
CGCCACGAAAGCAC-AAGCATGGCTCGCGCCATGACCGCCACCGCCGGCAACGGCGACGTGTGGGTGGAGAAGGTGGACA
AGATCAGGTACGTCTACAACGCCGTCACCAGGCCTTCTGTTTCCCCTAACCCGAGGCCGGCGACGGTGACGAAGAAGCTG
GCCGCCGCCAACGTCGCCATCTCCAGGAAGAACAGCGGGACGACCCTGGTCCGCGGCGTGGCCTCGCCGGAGGACATCGA
CGACTACATCGCCAGGAAGAAGAGGGAGTTCGCTCTAGGCCTGTAGCTCAAATGGATTAGTAT--CCACGATGGCATGAT
CATGAGCTAGGATGCTTTAAATTAA----CTAGTTAGCTATGAAAGCTGCGTGTTGCGGTTGTGATTATGGAGTATGATA
TGGAGTTGGTCATGCTCATGCATCAACTTAATTAGCGTGTGCGCCATAAGTTCTAAGCATGTTTCTTCAGGTG----TTG
TTCTTTTATGTCTTGTCTGAATTAAATTCTAGTATGTTC-----------------------------------------
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>chr1A_1_TraesCS1A01G084900
CGTCGACAACAGGACTGGCAAGGTCGGTGCGTCAGTATCGGCTCTGAAGATGGATCGGTGGAAGACGGTGGCGACGGCCT
CTGAGAGTGCACCGGACCGGTGTGTGACCCATACTCGACAATGCGGCTTGGTGGGACATCCGGCTTTACATGTTAGGCTT
TGGTGCGATGTCTGTTTGGTATTCGGCTCACCCTTCATCAAGTAGATAGGAGTAGTGATAGATGTTGCCAAGATGGTGAC
TTCAGACTTACTTATGTATTGTTTTGTAAGGTCTTTCTGAATAATTAATAAAATGGTTGCATACGTCGTCCAGATGCAGA
GAGATTGGGGTCGTCCTCCTTTAAAGAAAATCCTCTATAGTTGTGGGTATTAGTTAACAACCCCCAGACTTGCTATTTTG
TGTTGCCTCGGCTCTAAAGGTTGTGTATTTGCTTGTCCATAAATTAGGTTTTAAATTTCAGTATCAGAAATATTTTAGCA
GTTGCCGAAATCAATGAATGTCACTGAAACTCAGTTATTTCAGTTTTAGTTCGATCAAAGGACCAAAATTTCCAATTGAA
TTTGACAGAGGTCCAATCAAATATTATGAAAATCCAAGAAATAATTTAATAATTATTTGATTTTGCGTGTGCTACCAAAA
TTGCTGAAATATTTTGATCTAAAGGCAATTATTTCAGTATGTACCGAAACTAATGAAATTTCTGAAATCTCAACGAAATT
ACACTGAAAGTGAAAACTATCAACTTGTGGATAGTTTACATTCAGCTTCAGAGCTGTAACATCGTGATATATAGTTGGAG
CGCATAGGCTGTTACTTTT--ATTGTTCAGTGGTCTTAAAGAAAATCGCCACTACAAGGACGA--CAGAGCAGC---AGC
TGATAATTGTGTCCCTACATACTTAATCCCCTATGGC-----AACCACCACTGAACATTCCAGACAACAAACGGCGACAG
CTGCTGCTTGCTCCTGGAGCCTATAAATGGAGGTCCCATCATCCCAAGCCATGGAAGGCAAATCCTGACATCTCCTCCCC
CGCCACGAAAGCAC-AAGCATGGCTCGCGCCATGACCGCCACCGCCGGCAACGGCGACGTGTGGGTGGAGAAGGTGGACA
AGATCAGGTACGTCTACAACGCCGTCACCAGGCCTTCTGTTTCCCCTAACCCGAGGCCGGCGACGGTGACGAAGAAGCTG
GCCGCCGCCAACGTCGCCATCTCCAGGAAGAACAGCGGGACGACCCTGGTCCGCGGCGTGGCCTCGCCGGAGGACATCGA
CGACTACATCGCCAGGAAGAAGAGGGAGTTCGCTCTAGGCCTGTAGCTCAAATGGATTAGTAT--CCACGATGGCATGAT
CATGAGCTAGGATGCTTTAAATTAA----CTAGTTAGCTATGAAAGCTGCGTGTTGCGGTTGTGATTATGGAGTATGATA
TGGAGTTGGTCATGCTCATGCATCAACTTAATTAGCGTGTGCGCCATAAGTTCTAAGCATGTTTCTTCAGGTG----TTG
TTCTTTTATGTCTTGTCTGAATTAAATTCTAGTATGTTCCAATGGTCATTTCAGTTTTCTGAATAAATCTTGAATGGCTC
TTTTGGATGCTTCATCTCAGCAGGCAGAGAGTTGATTACATCAATTTTCGCATGATCATGTGACCCCACTGAGTTTTGTA
TTCTGCTTTCTGTTGCCCCACGCTACCTGGAGTGGATAGACACCAGACACCTTGATGGGAATAAAGTATGCAAGATCTTT
-GGACCCGATTAAGCAAGAGGATTCTTCATCTTAGGTGATCGAATTGTGATATTCACGCGTAGGCTCTTATCTTGAACGG
GACTGTTTCCAAATATATGTGAATTTGTCTCTAGCTTGCTAGT-------------------------------------
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-----------GAGCATCTCTAGCCTTTCCCCGTAAAATTTACAACT---------------------------------
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-----------------------------------------------------TCTCAAAAAAATACTTGTTTGAGAAGC
CACCTCTTCTAGCCCTTCCCCAAGGCCATTAACTCCTCAAAGTTGCCCCT------CAAAACTTCCACCCTCCCTTCAAA
TTTGAGAAGCTCCTACCGATTCTTCGTAAACCTTCTCTCTCCACCCTGTCACTAGATC----------------------
-----------------------------------------------------------TCAAGGTGCAACAGTTGGCAC
GCCGCCGGAACAAACGTGTCACGACTATAAATTCCCTGCGTTGCCCCTCCTTCCCAGTCAGGGCATTGTCCGAGTGCCCC
CCTAGCCCGACCATGGTGAGGATCCGACCCACTATGTTGACGTAGTTCTCGACGTGATGTTGTGCCAAAATCCAACAGAG
GGCGCTACAATCATCGCCGTGGTGCAGCACACGACCGCGGTTGCCGACTCGAGCTCCACTCTTGCAATAGGCTTTTGCTC
CGCTTTATAGATAAAGCAAAGATTCATACAACCAACCTCCAGATAAGCTATAAAGGCGATGATGGGGCAACAACACAATA
ATGCCCAAGGAGAAATATAAGAGAAAAGAAAAACAAGGCCACCTAGTGGCGGTTGACGGGCGAAGCTAGGATGACGACCG
AATCCACGAGCGCATGCAGCATAGTGTCTAGACGCGCTCGGTCATATCATGCTGCCTAGTA
>chr1D_808
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-------GCTTTTACTTTT--ATGGTTTCATCGTCTTAAAGAAAATCTCCACTACAAGGACGA--CAGAGCAGCAGCAGC
TGATAATTGTGTCCCTACATACTTAATCCCCTATGGCATGGCAACCACTACTGAACATTCCAGACAACAAACTGCGACAC
CTGCTGCTTGCTCCTGGAGCCTATAAATGGAGGTTCCATCATCCGAAGCCATGGAAGGCAAATCCTGACATCTCCTCCCC
CGCCACGAAAGCAC-AAGCATGGCTCGCGCCATGACCGCCACCGCCGGCAACGGAGACGTGTGGGTGGAGAAGGTGGACA
AGATCAGGTACGTCTACAAACCCGTCACCAGGCCTTCTGTTTCCCCTAACCCGAGGCCGGCGACGGTGACGAAGAATCTG
GCCGCCGCCAACGTCGCCATCTCCAGGAAGAACAGCGGGACGACCCTGGTCCGCGGCGTGGCCTCGCCGGAGGACATCGA
CGACTACATCGCCAGGAAGAAGAGGGAGTTTGCTCTAGGCCTGTAGCTCAAATGGATTTTAGTACCCACGATGGCATGAT
CATGGGCTAGGATGCTTTAAATTAATTAACTAGTTAGCTATGAAAGCTGCCTGCTGCGGTTGTGATTAT---GTATGATA
TGGAGTTGGTCATGCTCATGCATCAACTTAATTAGCGTGCGCATCGTAAGTTCTAAGCATGTTTCTTCAGGTC----TTG
TTCTTTTATGGCTTGTCTGAATTAAATTCTAGTATGTTCCAATGGTCATTTCAGTTTTCTGAAT--ATCTTGAATGGCTA
TTTTGGATGCTTCATCTCAGCAGGCAGAGACTTGATTACATCAATTTTCGCATGATCATGTGACCCCACTGAGTTTTGTA
TTCTGCTTTCTGTTGCCCCACGCGAGCTGGAGTGGATAGACACCGGACACCTTGATGCGAATAAAGTATGCAAGATCTTT
TGGACTCGATTAAGCAAGAGGATTCCACTCCTTAGGTGATCGAATTGTGATATTCACGCGTAGGCCCTTATCTTAAACGG
AGCTGTTTCCAAACATATGTGAATTTGTCTCTAGCTTGCTAGT-------------------------------------
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-----------GAGCATCTCTAGCCTTTCCCCCTAAAATTTATAACT---------------------------------
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-----------------------------------------------------TCTC-AAAAAATACTTGTTTGAGAAGC
CACCTCTTCTAGCCCTTCCCCAAGACCATTAACTCCTCAAAGTTGCCCCT------CAAAACTTCCACCCTCTCTTCAAA
TTTGAGAAGCTCCTACCAATTCTCCGTAAACCTTCTCTCTCCACCATGTCACTAGATC----------------------
-----------------------------------------------------------TCAAGGTGCAACAGTTGGCAC
GCCGCCGGAACAAACGTGTCACGGCTATAAATTCCTTGCGTTGCCCCTCCTTCCCAGTCAGGGCATTGTTCGAGTGCCCC
TCTAGCCCGACCATGGTGAGGACCCGGTCCACTATGTTGACGTAGTTCTCAACGTGACGTTGTGCCAAAATCCAGCAGAG
GGCGCTACAATCATCGCCGTGT---AGCACACAACCGCGGTTGCCGACTCGAGCTCCACTC-------------------
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>chr1B_808
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-------GCTTTTACTTTTATATGGTTTCATCGTCTTAAAGAAAATCGCCACTACAAGGACACGGCAGAGCAGCAGA---
TGATAATTGTGTCCCTACATACTTAATCCCCTATGGCA-----ACCACCACTGAACATTCCAGACAACAAACGGCGACAC
CTGCTGCTTGCTCCTGGAGCCTATAAATGGAGGTCCCATCATCCCAAGCCATGGAAGGCAAATCCTGACATCTCCTCCCC
CGCCACAGAACCACAAAGCATGGCTCGCGCCATGACCGCCACCGCGGGCAACGGAGACGTGTGGGTAGAGAAGGTGGACA
AGATCAGGTACGTCTACAACGCCGTCACCAGGCCTTCTGTTTCCCCTAACCCGAGGCCGGCGACGGTGACGAAGAAGCTG
GCCGCCGCCAACGTCGCCATCTCCAGGAAGAACAGCGGGACGACCCTGGTCCGCGGCGTGGCCTCGCCGGAGGACATCGA
CGACTACATCGCCAGGAAGAAGAGGGAGTTTGCTCTAGGACTGTAGCTCAAGTCGATTTCAG--CCCCCGATGGCATGAT
CATGAGCTAGGATGCTTTAAATTA----ACTAGTTAGCTATGGAAGCTGCCTGTTGCGGTTGTGATTAT---GTATGATA
TGGAGTTGGTCATGCTCATGCATCAACTTAATTAGCGTGTGCATCATAAGTTCTAAGCATGTTTCTTCTTCAGGTCTTTG
TTCTTTTATGGCTTGTCTGAATTAAATTCTAGTATCTTCCAATGGTCATTTCAGTTTTCTGGAT--ATCTTGA-TGGCTA
TTTTGGATGTTTCATCTCAGCAGGCAGAGACTTGATTACATCAATTTTCGCATGATCATGTGACCCCACTGAGTTTTGTA
TTCTGCTTTCTGTTGCCCCACGCAAGCTGGAGTGGATAGACACCGGACACCTTGATGCGAATAAAGTATGCAAGATCTTT
TGGACTCGATTAAGCAAGAGGATTATTCTCCTTAGGTGATCG-ATTGTGATATTCACGCGTAGGCCCTTATCTTAAACGC
AACTGTTTCCAAATATGTATGAATTTGTCTCTAGCTGCTAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAAAAAGAACGTTTGGGTAGTCGATCTATTTTGAACCGTTGGATGCAAG
ATAAATGGCCAGAGCATCTTCTTCAGCCTGCAACCACTCTGTTCATCTCTTTTCTGAAATCACCTGCGTACCACAGGCCC
AACCGCCTGCCTCCGCCGCTCCCGCACCAACCTCGCCGCACTGCCCTTCCCTCAACCGCAGCCCACTGCCGTGCTGCCTC
CGCCCTCGGCCATCCCTCTATCCCCGGGGATGACTGGTTTTTTCTCCGGCGAACTTGCACTAACGCCGTGCTGCCGCCCC
ACCCCCCACCCTAACATAGATGATGGGGTAGCTAACTGGTGAACTTCTTCCTCCCGTCCGGCTGTTTCTCTCTTCAATCC
CAAATCGACTGACCCCAATTCAAAAGTCAGGCGACTGACATGTATCTATTGTGTCTT-AAAAAACACTTGTTTGAGAAGC
CACCTCTTCTAGCC-TTCCCCAAAACCATTAACTCCTCAGTCCTCAAGTTGCACCCCAAAACTTCCACCCTCTCTTCAAA
GTTGAGAAGCTCCTACTAATTCTTCCTAAACCTTCTCTCTCCACCCTGTCACTAGATTTCAATGTGCAACAGATGGCACG
CCACCGGAACAAATGCGTCTCGGCTAAAAAACCTTCTCTCTCCACCCTGTCACTAGATTTCAATGTGCAACAGATGGCAC
GCCACCGGAACAAACG----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---S------------S---SSS-S------------------------------------------------
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------------------------------S---------------------------SSSS------------------
--------------------------------------------------S------------------SSS--------
------------------------------------------SS------------------------------------
----------S-----------------------------------------------------SS-------------S
------------------------------S-------------------------------------------------
-----------------------S-S------------------S------------S----------------------
-----S----------------------SS-----------------------------------S--------S-----
S-------------------------------------------------------------------------------
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--------------------------------S---------S-------------------------------------
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---------------------------------------------------------S----------------------
------------------------S-----------------------------------------------S-------
-----------------S--------------------------------------------------------------
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-----------------------S-----------S---------------------------------S----------
S---------------------S---SS----------------------S------S----------------S-----
---------------------SSSS-------S----------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_150
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--------------------------------------------------GTGGGACATCCGGCTTTACA----------
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>reverse_1311
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------------------------------CGCTCTAGGCCTGTAGCTCA------------------------------
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>forward_203
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-----------------------CGGCTCACCCTTCATCAAGT-------------------------------------
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>reverse_2983
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----------------------TCCGACCCACTATGTTGACG--------------------------------------
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