>input_sequence_76990
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--------------------------------------------------------------------GCCGCCGATTT-
CTGCGGATTACTCAGCCCTTGCC-TGTTTCCGTGGGTTCGCGTGCAGGTTCAGCCGAGCTCCATCGATGGCGTCGCTCTC
CGTGGCCACGCTCCCGCAGCTGGCCGGCGCGCCGGCGGCGGCGGCGGCCAAGAAGAGGTCCGGCGTGACGTACGTGGAGG
GCATGAACGCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTC
GCCAGGATCGTGGCGTCGCTGAGCCCCGCGGGGAAGCGGCGCGGGGGCTCGTTCGGCGCGCAGTGCAACGCCGCCGGCGA
GATCTTCCAGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGG
CGGCCTTCGAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCGGTTCAGG
TCAGGCTGTTGG--------------GCGTAAGCCGTGATATATAAAACGTGATGTATGCT-------------------
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>chr5B_1_TraesCS5B01G407400
TATTAAATGTTGTACTACTTTGTGTCATGCATGACAATTAAGACTAGCCACAGTGGGAGTAACTTCAGCAGTAACATCGA
GTCAAACTCAGCAAATTTGCTTATGTGACAATGAGTTAATGAGGTTACTATGCACTGTGGTTAGTCTAATAAGGCAATCT
AAGATACTAACTTATAATACTATGCATTACGGACATAATATCATACACTAGTATCATATGCATGATACTAGTTTATGATA
CTCACCATTACGACCAGCCTTATTTCCTCTCGTGATCCTCTTTGTATCCCTTTGAATATTGTTCCAAATTA---ATAAAG
TATGGGATCCCTAAGAAAAAGTAAACTGTACTGCTACTACTAGGCCAGCGTGTGGATTCCACGAACGACTCC--CGAAAC
AACAAGGGCCTCTTTGATTCATAGGATTGCAAAAGCACAGGAATAGGGAAAATGTAGGATCGGAATGGCATGTCCATTGG
ATCCCTATGGGATTTGTGTTTGTTTGATTGTGTCACGGGAAAAACAAAGGATTTCTTCCAAGAGGTTTGAGTGGATGTTA
GAATTCCTGTGAAATGTAGTACAAATGAATCCTTAGGAAAAAAATCCTATAGGATTCAATCCTACGAATCAAACGACGAA
CGTAGGGAAAATTCCCAAGGATTCTAATCCTTCAAAAATCCCATGAAAATCCTTTGAATCAAAGAGACCCCAAAGGGGGA
AGCATGCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTGGCCACCAATTGGACCTTCTCCTTTGCAGAGGCAAGG
ATAAACTGCCCTCCGGCCACCGCCCGTTGCCTCCCGCACCTTATCCTCCCCTGATCCCCCGTACAAAA-CCACTC----C
TTTCCCTCCATGTGACCCACCCAACCCCGAGCACCGCAGCCGGCCACACTCCCTCCTCCTT---CTCCTCCAGCTCCAAG
AACTCCAAAAGGT------------AAGCAATCCAACCCACATTCCCCGTACCAGATC---GTAGCTCGCCGCCGATTT-
CTGCGGATTACTCAGCCCTTGCC-TGTTTCCGTGGGTTCGCGTGCAGGTTCAGCCGAGCTCCATCGATGGCGTCGCTCTC
CGTGGCCACGCTCCCGCAGCTGGCCGGCGCGCCGGCGGCGGCGGCGGCCAAGAAGAGGTCCGGCGTGACGTACGTGGAGG
GCATGAACGCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTC
GCCAGGATCGTGGCGTCGCTGAGCCCCGCGGGGAAGCGGCGCGGGGGCTCGTTCGGCGCGCAGTGCAACGCCGCCGGCGA
GATCTTCCAGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGG
CGGCCTTCGAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCGGTTCAGG
TCAGGCTGTTGG--------------GCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTTTACATTTGGTTTTG
TATCAATGACAATTGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTGTCTCTCGATTGTT
CGCCACTTGTCTGATTCTTG--TAGGAGGAATACAGTTCCAAAGGGAAAATGTTCTGCGAGATA----------------
------------ATAACACGATATTCAGAAGTCATAATGCAATATTGTCTAACATCTTGCTGATCAAAATCATATATACT
--------------------------------------------------------------------------------
----------------TG-GAAATGCAGAACAACAGTGTGTTCTCCCTTCAGGATCATTCGGTCTGGAGAATTCCTACAG
GATATTCACCCGCGGGAATTTTTGCCCCTCTATTTATTTTAAAATTTTATCACTCGACTCACAAGATTAGAGGTACGAGA
TTCCTTAGGATGATTATGCCCATGTTGATCTACTCCCTCCGTCCCAAAATATAAGAGCGTTTTTGGGACGGAGGGAGTAA
TTTCTTCAAATCTAGGAGGAATACACTTCGAAAGGGAAAATGTTCTGCAAGACTGATATCACAACATTCAGAAGTCATAA
TGCAACGTTGTCTGACATCTCTTCCTGACCAAAACCATGTAGTAGCGGGTGTAAATATGAAATGACAGCGTATTTTCTCG
TAATCTGTCGACGTAAGTGAATATCCTGGCTTCAGTCTAAAAGAAGCAATGCTATTGAGGAGAATATGCAATACACACAA
GGT---ATAAAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTTGCG------CTCATTAGATCATG
TGTTTCTGCACTATAGCCGACAAATAAAGTAAAACGTTCTGCAACTGAACCTCAAAATATATGTTATCGTAGCGCCAAGG
CTCTAAGCAGCATTCTAATTTTGCCGAAGTACAACAAGAGACATCTTGGGAGCGCCAAATCTCCGGCAAATCCCGCAGTG
CTTTGTTTCGTTGATTACATCGGCCTCTGACAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCAGGGAGGA
>chr5A_259
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------------------CTTATTTCCTCTCATGACCCTCTTTGTATCCCTTTGAATATTGTTCCAAATTACTAATAAAG
TATGGGATCCTAAAAAAGAAGTAAACTGTA---CTACTCCTAGGCCAGCGTGTGGATTCCACGAACGACTCTCGCGAAAC
AA------------------------------------------------------------------------------
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----------------------------------------------------------------------CAAAGGGGGA
AGCATGCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTAGCCACCAATTGGACCTTCTCCTTTGGAGGAGCAAGG
ATAAACTGCCCTCCGGCCACCGCCCGTTGCCTCCCGCACCTTATCCTCCCCTGATCCCCCGTACAAAA-CCACTCCTTCC
TTTCCCTCCATGTGACCCACCCAACCCCAAGCACCGCAGCCGGCCACACTCCCTCCTCCTCCTCCTCCTCCAGCTCCAAG
AACTCCAAAAGGT------------AAGCGATCCAAGCCGCATT-CCCGTACCAGATC---GCAGCTCGCCACCAATCAG
CTGCGGATTACTCAGTCCTTGCTTTGTTTCCGTGGGTTCGCGTGCAGGTTCAGCCGAGCTCGATCGATGGCGTCGCTCTC
CGTGGCCACGCTCCCGCAGCTGGCCGGCGCGCCGGCGGCGGCGGCGGCGAAGAAGAGGTCGGGCGTGACGTACGTGGAGG
GCATGAACGCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTC
GCCAGGATCGTGGCGTCGCTCAGCCCCGCGGGCAAGAGGCGCGGGGGCTCGTTCGGCGCGCAGTGCAACGCCGCCGGCGA
GATCTTCCAGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGG
CGGCCTACGAGGAGTCGGAGGAGTGAGTGAAACCCAACCCACCGCCGTGTGCCTGCCCTGACCAGCCGTTTCAGTTCGGT
TCAGGCT--GCTGCTGTTTGGCTGGCGCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTT-ACATTTGGTTTTG
TATCAATGACAATTGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTG--TCTCGATTGTC
CGCCGCTTGTATGATTCTTCTCTAGAAAGAGTACACTTCGAAAGGGAAAATGTTCATAG---------------------
------------------------------GTCATAGTGCACCATTGTCTAACAACTTTCAGACCCAAAGTCATACA---
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-TACTTGGTAGTAAGGTGAGAAATCTGAAACAACAGTGTACTCTCTTCAGGCT-----------TGGAGAATAACTACAA
GATTTTCACCCGCGGGG---------------------------------CATTCGATTCACAAGAA-------------
--------------TATGCCCATGTTGACCTTAGTTTCTTAGAATTC---------------------------------
-----------CTAGGAGGAATACACTTCGAAAGGGAAAATGTTCTGCAAAACTGATAGCACAACATTCAGAAGTCATAA
TGCAACATTGTCTGACATCTTCC----------------------------------TGAAACGACGGTGTATTTTCTCG
TAAATCT---------GTGAATGTCCTGGCTTCAGACTAGCAGATGCAATGCTATTGAGCAGAATATGCAATACACAGAA
CAGGGAATAAAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTGGCG------CTCATTAGATCATG
TGTTTCTGCACTATAGCAGACAAATA-AGTAAAACGTTCTGCTAAAGAACCCTCAAAAAATAGTTATGGTAGTGGCAAGG
CTCTAAGCAGCATTCTAATTTTGCCCAAGTACAACAAGAGACATCTCGGGAGCGCCCGATCTCCGGTAAAGCTAGCAGTG
CTTTGTTCTGTTGATTACATTGGCCTCTGGCAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCAGCGAGGA
>chr5D_259
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------------------CTTATTTCCCCTCATGACCCTCTTTGTATCCTTTTGAATATTGTTCCAAATTA---ATAAAG
TATGGGATCCTAAAAAA--AGTAAAATGTA---CTACTCCTAGGCCAGCGTGTGGATTCCACGAACGACCCT--CGAAAC
AA------------------------------------------------------------------------------
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----------------------------------------------------------------------CAAAGGGCGA
AGCATGCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTAGCCACCAATTGGACCTTCTCCTTTCGAGGAGCAAGG
ATAAACTGCCCTCCGGCCACCGCCCGTTCCCTCCCGCACCTTATCCTTCCCTGATCCCCCGTACAAAAACCACTC----C
TTTCCCTCTATGTGACCCACCCAACCCCAAGCACCGCAGCCGGCCACACTCCTTCCTCCT---------CCAGCGCCAAG
AACTCGACAACCACCGGAGGTAAGCAAGCAACCCAACCCACATTCCCCGCACCAGATCATCGCAGCTCGCGA--------
---CGGATTACGCAGCCCTTGCTTGTCTCTGACTGAC-----TGCAGGTTCAGCCGAGCTCGACCGATGGCGTCGCTCTC
CGTGGCCACGCTCCCGCAGCTCGCCGGCGCGCCGGCGGCGGCGGCGGCGAAGAAGAGGTCCGGCGTGACGTACGTGGAGG
GCATGAACGCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTC
GCCAGGATCGTGGCGTCGCTCAGCCCCGCGGGGAAGAGGCGCGGGGGCTCGTTTGGCGCGCAGTGCAACGCCGCCGGGGA
GATCTTCCAGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGG
CGGCCTTCGAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCAGTTCAGT
TCAGTTCAGGCTGCTGTTTGGCTGGCGCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTT-ACATTTGGTTTTG
TATCAATGACAATCGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTGTCTCTCGATTGTT
CGCTGCTTGTCTGATTCTTCTCTAGGAAGAGTACACTTCGAAAGGGGAAATGTTTTTCGGAAAAGAAAAGAGGAAAATGT
TATGCAAGACTGATAACACAATGTTCAAAAGTCATAATGCAACAATATCTGACACCTTGCAAACCCAAGTCATATATACT
ACTCCCTCCGTCCCATAATATAAGACGTTTTTTGACTTAGTATAGTGTCAAGAAACGTCTTACATTATGGAACGGAGGGA
GTACTTGATAGCAAGGTG-GAAATGCGGAACAAAAGTGTATTCTCTCTTCAGGC--------------------------
-------------------------------------------------TCATTCGACTCACAAGAATGGAGGTACTAGA
TTCCTTATGATGATTATGCCCATATTGACCTGA-TTTCTTCGTTTTC---------------------------------
-----------TTAGGAGGAATAAACTTCGAAAGGGGAAATGTTCTGCAACATTGATAGCACAACAATCAGAAGTCATAA
TGCAACGTTGTCTGACATCTCTTCCTGACCAAAACCATGTATCGTACC----AAAGATGAAACGACAGTGTATTTTCTCA
TAATCTGTCGGCATAAGTGAATGTCTTGGCTTCAGACTAGAAGATGCAATGCTATTGAGCAGAATATGTGATACA----A
CAGGGAAT-AAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTAGCAGTAGCACTCATCAGATCATG
TGTTTCTGCACTATGGCCGACAAATAAAGTAAAACGTTCTGCAACTGAACCTCAAAATATATGTTACGGTAGCGCCGAGG
CTCTAAGCAGCATTCTAATTTTGCCCAAGTACAACAAGAGACATCTTGGGAGCACCAAATCTCCGGCAAATCCCGCAGTG
CTTTGTTTCGTTGATTACATCGGCCTCTGACAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCAAGGAGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------S---S--------------------------------------------
----------SS--S--S------------SSS-----S--------------------------------S--------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------S-------------------------S--SS------
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----------------------------S-------------------------------S-------------------
--------------------------------------------------------------S--------S--S--SS-
----------------------S--------------------------------------S------------------
------------------------------------------------S-------------------------------
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--------------------S---------------S-------------------------------------------
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------------------------------------------------------------------------S------S
-------SSSSS------------------------------------------------------S-------------
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----S--------------S-------S--S----S---S----------------S--SS-S-----------------
-------------------S--S----S--------------S-----------S-----S--S-S--------------
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--------------------------S------------S-----S-------SSSSSSSSSSS--------SS-----S
---S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------S-S-------S---
-------S--------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------S-------S---------------------
-----------------------------------------SSSSSSSSSSS---S------S-----S-----------
----------S-S---------S------------S---S----S--------------S-----------------S--
SSS-----------------------------------------------------S-----------------------
-------------------------------------------------------------------S------------
-------------------------S------------------------------------------------------
-----------------------------------------------------------------------------
>forward_485
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-----------------------------------------------------------------TGGCATGTCCATTGG
ATCCC---------------------------------------------------------------------------
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>reverse_2000
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-------------------------------------------------------------------------------G
GATATTCACCCGCGGGAAT-------------------------------------------------------------
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