>input_sequence_76972
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----------------ATGCTCTCCACCGCACGCTGCAGTGTCCTCCCCGTCCGTCCGCAACCTTGCGTCGCCGTCCCCG
TCCCCCGCGGGCGCGCGCGGGCGGTCACCGCCGTCTCGGTGAGGCCGCGCCGCCGAGGCGCGCGCCGGGACCGCTCGTGG
GAGGACGACGGCGGCGGCGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGGGACGCGCGAGAC---GAGGA
AGACGAGCCGGAGGAGGAGGAG---------------------CCGGGGCGACGGGCGGCCGGCTCGCCGGAGTCGGCCG
CGGGGCAGCTGCGCGGGTCCGACGTGCTGCGGGCGCTGCAGCGGGCGGCGGCGGCGAAGGAGGCCAAGAAGAGGAGCAGA
AGGAGCGCGGGCGGGGCGCGGCTGGCTGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAGGCCGCGGAGGAGGCCGTGGC
GGGGGAGGCGAGGCCGATAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGAGCTCAGGGTGCAGCAGCTCC
TCCACAAGCACCAGTAG---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G420700
CGCGTGCAGCTGGACATCCGCGAGGGCCACGCGCAGACGGTGGCCGCCACGCTGGCCATGCTGCGGGACGCCCCGGACGT
GCCGCTCGCGGGCGCCACGGTGTGCGACGCCGGGTGCGGGACGGGGTCGCTGTCCATCCCTCTGGCCGCCGCGGGGGCCT
CCGTGCTCGCGTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGCAGGCGCAGGCCGCCCTCGCCGCCGGGACG
TCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGCGACCTGGAGAGCCTGGAGGGGCGGTACGACGTGGTGGTGTGCCT
GGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCGTCGCTCGCCGGGAAGCGGCTGG
TCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGTTCCCCGGCCCGTCCAAGGCC
ACGCGCGCGTACCTCCACTCGGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGGCGCGTCAAGAACAAGGGCTT
CATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGCCTCGTCGTAGCAAATGCGTTCAT
CATAGACCGGGATTTTTAT--TCTTGTAGAGTGTAGCTAATACA----TGTATCAGTAAACTCT-------------AAT
CTCTCGGTGGTTCAAGCATGACTCGTTCTTGTTGTCATCGTGCTGCGTCAAAGCTCGGCATTGTGCCATGAGTTTCTTCT
TGGATAATGGAGGAATGCCATCACCATGAATGGACATCCT--------------------------AGCATTGCTCAGCT
CTGGTCTGGATGCCAGTGGACTCAGAGTCAGTGAGAACTGAGGAGATGTGGAGCAGAGCGG-CTGCAGAT----AAAACG
GAGTGCTCTGCTTATAGTCGAGCGCGCGCGCGCGCCCTAGCGGCTA------TGCTGAAGATAATGCAGGGCGCCACCAG
TATCCATCGATGTGCGATGCTCTCCACCGCACGCTGCAGTGTCCTCCCCGTCCGTCCGCAACCTTGCGTCGCCGTCCCCG
TCCCCCGCGGGCGCGCGCGGGCGGTCACCGCCGTCTCGGTGAGGCCGCGCCGCCGAGGCGCGCGCCGGGACCGCTCGTGG
GAGGACGACGGCGGCGGCGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGGGACGCGCGAGAC---GAGGA
AGACGAGCCGGAGGAGGAGGAG---------------------CCGGGGCGACGGGCGGCCGGCTCGCCGGAGTCGGCCG
CGGGGCAGCTGCGCGGGTCCGACGTGCTGCGGGCGCTGCAGCGGGCGGCGGCGGCGAAGGAGGCCAAGAAGAGGAGCAGA
AGGAGCGCGGGCGGGGCGCGGCTGGCTGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAGGCCGCGGAGGAGGCCGTGGC
GGGGGAGGCGAGGCCGATAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGAGCTCAGGGTGCAGCAGCTCC
TCCACAAGCACCAGTAGCAACCACAAAATCATGGTCGTTGGTTAAAGAGCTCTGTTGATTAAAAATGGCC----------
--------AATCCATGTTTGTGCCGGCGAAGAAGCGTGCTCTGAATCTGTTGAATTTTGATTCTTGGAACACAGACAGCT
CTGCTTTT-TATGCATTCCCTTCTCATTCTGAGATTTGGTCACGAGTGC---------GCGCATTTTAGAGCCAGGGTGC
AAGGGT----------GCAAGATCAACTCGGCGACGCGGCAAACACACGGCAAACCCACCC-ATCAAGGCTTCAAGAGAG
CGGCGCGCAGGCGGGGGCGACGCCAAGGTGCTGCAAAGGGTGGGGACACTGGGCCTCGCCGGAGTAATATC---------
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---------------------------------------------------------AGCCACCCTACTTCTACGCCGCC
AAACAGCCCGGACGGCATTCCCCGGCCTCCGCCATCGGGTGCGTGTCGTATTGTGTCGACATCTATGCGGCGGTGCTCCA
TTTCACCGACTCGGCATCGCCGCAGCTTGTCTAGCTATGGACGCCAGGCGTGGATCAGCTCGGCGCCCGCTCTCTGTTCG
ACAATATGTCTCAAACGGGCGAAATGCCATATGAC---------------------------------GACAGAGGCGGA
GACGACTTCGAGGAAGTCCAAGTAGATGACTCCAAGCCGGAGGTGTACGCCCAGT---------------------AGCC
GAAGCAAAATAGCGGCGAGACGGACCTTAATCCGGTGGATTGGCTAGCCGATCCAAAGAAGAGGGGTAGAGGAGAAAGTT
TTAACATGTGGGCGGACAAATTATTATGCGATGTGTGATTGGCCACTAGCATCGATCCGCCCATGGCGCAGAACAAA-AG
GCGCAATATTCTTGTCCAACAGTGGCGAAGCCATACTTCAGCTGGGTAGTCAATTGACTACACAGCTTTTTGCATAAACA
AAATAAATCAAGTTGAAATTATGCCAAAAAATCTAACAAATGCATACATATGACTACACAACATTCAGTTGACCACACAT
GTTTCGATTGCTGGCACCGCCACTGTTGTCCAACATTCATCCTTGGTTCCATGGGAG
>chr7A_1
CGCGTGCAGCTGGACATCCGCGAGGGCCACGCGCAGACGGTGGCCGCCACTCTTGCCATGCTGCGGGACGCCCCCGACGT
GCCCCTCGCCGGCGCCACGGTGTGCGACGCCGGGTGCGGGACCGGGTCGCTGTCCATCCCGCTGGCCTCCGCGGGGGCCT
CCGTGCTGGCCTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGC------AGGCCGCTCTCGCCGCCGGGTCA
TCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGGGACCTGGAGAGCCTGGAGGGGCGGTACGACGTGGTGGTGTGCCT
GGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCCTCCCTCGCCGAGAAGCGGCTCG
TCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGTTCCCCGGCCCGTCCAAGGCC
ACGCGCGCCTACCTCCACTCGGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGGCGCGTCAAGAACAAGGGCTT
CATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGGCTCGTCGTAGCAAATGTGTCCAT
CATAGACCGGGATTTGTAT--TCTTGTAGAGTGTAGCTAATACA----TGTATCTGTAAACTCT-------------AAT
CTCTCGGTGGTTCAAGCATGATTCGTT---GTTGTCATCGTGCTGCGTCGAAGCTAGGCATTGCGCCATGAGTTTCTTCT
TGGATAAAGGAGGAATGCCATTGCCATGAATGGATCGGCGGAGTTGCAAGCTGCATATGGACATCGAGCATCGCTCTGCT
CTGGTCTGAATGCCAGTGCACTCAGAGTCGGT-------GAGGACATGTGGAGCAGAGCAGACTGCAGAT----AAAACA
GAGAGCTCTGCTTATAGTCGAGTGCGCGCGCG--CCCTAGGGGCTAAGCTACTGCTGAAGATAATGCAGGGCGCCACCAG
CATCCATCGATGCGCGATGTTCCCCACCGCACGCTGCAGTGTCCTCCCCGTCCACCAAAAGCCGCGCGTCGCCGTCGCCG
TCCCCCGCCGGCGCGCGCGGGCGCTCACGGCCGTCTCTGTCAGGCCGCGCCGCGGAGGTGCGCGCCGTGACCGCTCGTGG
GACGACGACGGCGGCGGGGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGGGACGCGCGTGACGAGGAGGA
AGACGAGCCGGAGGAGGAGGAGGAGT------CGCCTTTGGGGCCGGGGCGACGGGCGGCCGTCTCGCCGGAGTCGCCCG
GGGGGCAGCTGCGCGGGTCCGACGTGCTGCGGGCGCTGCAGCGGGCGGCGGCCGCGAAGGAGGCCAAGAAGAGGAGCAAA
CGGAGCGCGGGC------------GCGGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAGGCCGCGGAGGAGGTCGTGGC
GGGGGAGGCGAGGCCGGTAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGAGCTCAGGGTGCGGCAGCTGC
TCCACAAGCACCAGTAGGCACCGCAAG-TCATGATCTTTGGTTGAAGAGCTCTGTTGATTAAAAATGGCC----------
--------AATCCATGTTTGTGCCGGCGAAGAAGCGTGCTTTGAGTCTGTTGAATTTTGATTCTTGGAACACAGACAGCT
CTGCTTGTATACGCACTCCCTTCTCATTCTGAGATTTTCTCATGAGTCTTTCTGTGAGGCGCATTTTGGAGCCAGGGTGC
AAGAGGCGGGATTCGA-CAAGATCAACTCGGCGAT-----------ACGGCAAACCCGCCC-ATCAAGGCTTCAAGAGAG
CGGCACGCAGGCGGGGGCGAGGCCAAGGTGC---AAAGGGCGGGGATGTTGGGCCTCGCCGGAGTAACATT---------
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---------------------------------------------------------AGCT-------------------
--------CGGTCGGCATTCCCTGGCCTCCGCCGTCGGGTGCGTGTCATATTGCGTCGACATCTATGCGG-GGTGCTCCA
TTTCACCGACTCGGCATCGCCACAGCTTGTCTGGTTGTGGACGCCGGACGTGGATCAGCTCGGTGCCCGCTCTCTGTTCG
ACGATATGTCTCAAAGGGCAAAAC--------------------------------------------------------
----------------GCCAAGTAGATGACTCCAAGCCTGAGGTGTACGCCCAGT---------------------AGCC
GAAGCAAAATAGCGACGAGACGGGCCTTAATCCGGTGGATTGGCTGGCCGATCCAAAAAAGAGGGGTAGAGGAAAAAGAT
TTAACATGTGGGCGGACAAATTATTATGCGATGTGTGATTGGCCACTAGCATCGATCCGCCCATGACGCAGAGCAAAGAG
GCGCAATATTCTTGTCCAACA-----------------------------------------------------------
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>chr7D_1
CGCGTGCAGCTGGACATCCGGGAGGGCCACGCGCAGACGGTGGCCGCCACGCTGGCCATGCTGCGGGACGCCCCGGACGT
GCCCCTGTCCGGCGCCACGGTGTGCGACGCCGGGTGCGGGACCGGGTCGCTCTCCATCCCGCTGGCCTCCGCGGGGGCCT
CCGTGCTCGCGTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGCAGGCGCAGGCGGCCGCGTCGT------CG
TCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGGGACCTGGAGAGCCTGGAGGGGCGGTACGACGTGGTGGTGTGCCT
GGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCCTCCCTCGCCGGGAAGCGGCTGG
TCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGTTCCCCGGCCCGTCCAAGGCC
ACGCGCGCCTACCTCCACTCCGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGGCGCGTCAAGAACAAGGGCTT
CATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGGCTCGTCGTAGCAAATGTGT---T
CATAGACCGACTGTGGTTGTATCTTGCAGAGTGTAGCTAATACGTACGTGTATCTCTAATCTCTCGGTGGTATCTCTAAT
CTCTCGGTGGTTCAAGCATGATTCGTT---CTTGTCATCGTGCTGCGTCAAAGCTAGGCATTGCGCCATGAGTTTCTTCT
TCG---------------------------------------------------ATATGGACATCGAGCATCGCTCTGCT
CTGGTCTGAATGCCAGTGGACTCAGAGTCAGT-------GAGGAGACGTCGAGCAGAGCAG-CTGCTGCAGATAAAAACA
GAGAGCTCTGTTTATAGTCGAGCGCGCGCGCG--CCCTAGGGGCTA------TGCTGAAGATAATGCAGGGCGCCACCAG
CAACCCTCGATGTGCGATGTTCTCCACCGCACGCTGCAGTGTCCTCCCCGTCCACCCACAGCCGCGCGTCGCCGTCCCCG
TGCCACGCCGGCGCGCGCGGGCGCTTACCGCCGTCTCGGCGAGGCCGCGCCGCGGAGGCGCGCGCCGGGACCGCTCGTGG
GACGACGACGGAAGCGGCGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGGGACGCGCGTGACGAGGAGGA
AGACGAGCCGGAGGAGGAGGAGGAGTCGCCGCCGCCTTTGGGGCCGGGGCGACGGGCGGCCGGCTCGCCGGAGTCGCCCG
GGGGGCAGCTGCGCGGGTCGGACGTGCTGCGGGCGCTGCAGCGGGCGGCCGCGGCGAAGGAGGCCAAGAAGAAGAGCAAG
CGGAGTGCGGGCGCCGCGCGGCCGGCGGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAGGCCGCGGATGAGGTCGTGGC
GGGGGAGGCGAGGCCGATAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGAGCTCAGGGTGCAGCAGCTCC
TCCACAAACACCAGTAGGA----------------------TTAAAGAGCTTTGTTGGTTATCATGGCTCGTAGTTTGTC
GAGCGACTAATCCATGATTGCGCCGGCGAAGAAGCGTGCTTTGAATCTGTTGAATTTTGATTCTTGGAACACAGACAGCT
CTGCATGTATATGCACTCCCTTCTGATTCTGATTTTTTTTAGTTTTGAAAA----------CATTTTGGAGTGCTGATTT
TGTTGTTTTTGCCATGGCAATATCAACTTGGCGAC-----------ACCGCAAACCCGCCGTATCAAAGCTTCAAGAGGG
CGGCGTGCAGGCGGGGGCGGGGCCAGGGTGC---AAGGGGCGGGGATGCTGGGCGTCGCCATCGTAAAAAAAAATTAGAC
CAACCCAAGGGTTAACTCTTGTTGGCATTTTTTTATAGGAGAAACTCCGCGAGCACCGCGCGTCCGAGCCGAGACTCGAA
CTCGGGTGGGCTGGCAGCAACCTCAGCTGCCCAGCCAACGGGTCGACGCCCCGTCCTCAGGGCGTCGCCATCGTCATCCA
TGCACACGCCGCCCTGGCCGGGGTAATACCAGCCGCCCTACTTTTACGTCGCTAAGCAGCT-------------------
--------CGGTCGGCAGTCGCCGGCCTCCGCCGTCGGTTGCGTGTCGTATTGCGTCGACATATACGCGGCGGTGCTCCA
TTTCACCGACTCGGCATCGCTGCAGCTTGTCCAGCTGTGGACGCCAGGCGTGGATTAGCTCGGTGCCCGCTTGCTTTTCA
TCAGTATGTCTCAAACGGGCGAAACGCCATATGACAACGCATATAGGGAGTTGTTGGATATTATCCAGGACGGAGGTGAA
GACGATGTCGAGGGAGGCCAAGTAGATGACTCCAAGCTGGAGGTGTACGCCCAACAGCCAGGCATGTACACCGGGCAGCC
GGAGTAGAACATCGACGAGATGGTCCTTGATCTGGATGATTTGCTGGCCGATCCAAAGAAGAGGGGTAGAGGAGAAAGTT
TTAACATGTGGGAGGACAAATTGTTATGCGATGTGTGGTTGGCCACTAGCATCGATCCGTCCATGACGCAGAGCAAAG-G
GCACAATATTTGGTCCAACA------------------------------------------------------------
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>SNPs
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---S-----S--------------------------------S-----------------S------S------------
-----------------------------------------------------------------------------S--
-----------------------------------S--------------------------------------------
---------------------------------------------------------S--S-------------------
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--------S-----------------------------------------------------------------------
--------------------------------------------------------S----------------S--S---
---------------S--------------------------------------S-------------------------
---------------------S-----SSS-------------------------S-------S----------------
-------S-------------SS-----------SSSS-S-------------------------------S----S---
--------S-----------------------SSSSSSS--------------------S-------------------S
---S----------------------------SS------S---------------------------------------
S------------------S---------------------------------SS--S--S--SS---------------
--------S--------------S-----------------------------S--------------------------
--S-----------------------------------------------------------------S-----------
----------------------------------------------------------------------------S---
S-----------------------------------------------------------------------------S-
S------------SS-------S---S----------------------------------------------S------
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-----------------S----S---SS-----S--S-------------------------------------------
----------------------------------------S---------------------------------------
------S--------S---------------------SS---S----SS------------------S------------
---S-------------------------------SSSSSSSSSSS-----------S----------------------
--------------------S----------SSS------S-----SS-------------------S--S---------
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------------------------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSS---S---------------------S-------------------S--------------------------
------------------------------------S--------------------------S----------------
------------------------S----------------------------------------------S----S-S-
-----SS------S--S---------------------------------------------------------------
--------------S--------S---------------------S----------------------------------
-----------------------------------------------------------------S------S-------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_960
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------------------------------------------------------------GAGCGGCTGCAGATAAAACG
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>reverse_2477
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----------------------------------------------------------------------------CGGA
GACGACTTCGAGGAAG----------------------------------------------------------------
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