>input_sequence_76970
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-------------------------------------------------------------------ATGTTGCAGCGAA
CGGCGTCGGC------CGCCATGGTGTCCGGCTACCGGCAGAGGGAAGCCGTGGGTGCGTGCACAGAGAGCCTCGGGTCG
GAGAGCGGCGACGTCGGCGGGGATATCGAGCAGCTCCCGGCCGTCATCGGCGCCGGAGCGGACCAGGACGGGCACGGCGC
GGGAATGGTGGAGCATAAGGATTTGGCGGGGAAGAGGCGGCGAGGCAACAGGCGCCTCCCTCCGGCTATGCCAAGGCCGG
CCGAGGCGTTCATGCGCGCGGAGCGGCGTGGCGGGCGGCTCATCCTCACCCGGGTGGTGCGGTCGGTCGAACGGCCGCGG
GAGGTGTTCTGTGCGTCCCGCGCCCACGGGCGCCTGCGCATGCGCTTCGCTGAAGAAGACCCCTTGTACGGTGAGGAGCG
CCAAGCGCCCGAAGCAGCCGAGAAGGAGAGTCGGGCCCTGGTCGGTGGCTGCGGCAACGGGGTGGGGTTTCGCCAGGCGG
CCACCGGCACCGGGAGGCGCGTCGAGATCGGCGCCGTGATGGGGATATGA------------------------------
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>chr4A_1_TraesCS4A01G145800
AGTTGATACTTTCCAGGAGTGGTGGTTGAAGACAATGAGTCACTTTCGACAGCCATACAAGCAAGGATTTGACACATTTT
TCATCGTTGTAGCATGGTTGCTCTGGAAGCAAAGAAATGCAAGGGTCTTCAACAGGCCGAGCAAGTTAGTTCTGCTACTA
GGCTAGCTCCACAAATTCTAGAGGAGATCAAATCTTGGAAGCTTGCGGGTGTGGGTGTGGTAGGATTGAGTAGATTTGTG
AGAGAGTAGTCTCTTCATCTTAGTTGGAGATTGGAGTTGATGTATCCTCATCAATGTCTACATCGTTGTAGGGATTTCGT
AAACTTATATACTTCCTTCTATAAAAATATGGTATTGCTTTTAACGTACTCTAAAAAAAAACATCCACCACGGCACCTCA
CCACCGTCCCCTCCAATCCACCACAGCACCTAACTAGAAACTCGTGCTGCCCTCGTTGGCTCGTTGCATTCCAGCTCTCC
ACCAGCCACGAGCTAGCGCAAAGCCAAAACGGCACTCCCCCTGGCCTGCGGGTCCCACGTGTATCATACCCCACGCGTCG
GTGACTCTGCATCAGGACGTACAGGGCGT-GTTGTTCCTTCTCCTGCC--------------------------------
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---------------------------------------------------------------------AAGCTGGAACC
CTACATGACCAGATATACCTCGTCGTAGGGCTTATCTTCCACCGACAGGTGGGTCTTGGACCGTGCGTGTGTGCAAAACG
ATGAGTACGACTAGCTGGTTGCGTGGAGGCTAGGGTAGCGTGGGCCCCGGTCAAGTGGCGGCGCCCACAGCTGTATCAAC
TAACAACCAGCTTGGCGGCGGTTGGTTGAAACCACAGGCAACTGACAGGTGAACCTCGACAACTGTGGGCCAGCACGTCA
GTTGGAGATCAGCTGCCCACTTGCGTAGGCTGCAGAGACCGTGGTAGTAC-----GTATATAACCCTCACACCATCTCTT
CCGTCCATCCACACCGAGAAAGGAAAAAGATACGGAGAACAGAGGAAGAAACAAGAAATATATATCCATGTTGCAGCGAA
CGGCGTCGGC------CGCCATGGTGTCCGGCTACCGGCAGAGGGAAGCCGTGGGTGCGTGCACAGAGAGCCTCGGGTCG
GAGAGCGGCGACGTCGGCGGGGATATCGAGCAGCTCCCGGCCGTCATCGGCGCCGGAGCGGACCAGGACGGGCACGGCGC
GGGAATGGTGGAGCATAAGGATTTGGCGGGGAAGAGGCGGCGAGGCAACAGGCGCCTCCCTCCGGCTATGCCAAGGCCGG
CCGAGGCGTTCATGCGCGCGGAGCGGCGTGGCGGGCGGCTCATCCTCACCCGGGTGGTGCGGTCGGTCGAACGGCCGCGG
GAGGTGTTCTGTGCGTCCCGCGCCCACGGGCGCCTGCGCATGCGCTTCGCTGAAGAAGACCCCTTGTACGGTGAGGAGCG
CCAAGCGCCCGAAGCAGCCGAGAAGGAGAGTCGGGCCCTGGTCGGTGGCTGCGGCAACGGGGTGGGGTTTCGCCAGGCGG
CCACCGGCACCGGGAGGCGCGTCGAGATCGGCGCCGTGATGGGGATATGATCGAGGCCCTGAGGTCGGTCGACTTGTGCC
TCGATTCGAGTGCGGCCGCGATGCTGCTGGAGCACTAGCTAAGCTGCATTTTTGGTTCTTTTTTTTTCTATTTATTTCCG
AGCGATTTTGCTTCATTGCGGAAGTAGGAAGTAGATGTAGTTTTCAGATCTTATCGTTGTGCAGATTTGTGGGGGAGTGA
TGATTGATTGTTTCTGGATAGTACAACTGATCTTTGTGGACTGTGGTTACCTCCTCAAGATTCAATGACGCATCAGATGA
TGATAATACAGAGATCGATGATAAATAATACAGTAGTAATGCTATTATTATACCTCCTGCATGCTGCAATTTTAGGGGCG
TGCCCCTGTTTGAGCAAGTATAATAGTGGGCTTATATAGCCCGCTTACATATTATTTTTGCCTATATGGAGAAGAGAGAT
GTAAAAAATTAGGGAGAGTGTGCTTCATGAGCCTATGTATATGTGCATTCCTAGGTAAATGCAATAAATTTGAAGAATAA
GATATAGAGAAGATGAAAATATATATACTAATGCAATAGCCAACCTTATAACCCACACTATTGTATGTATGCATATAGGT
GATGGCTATAGATGACATGGTGGTTTCTTATAGCCATCAGCTAGCTATATTATTAACCATGCTCTTTAGCATACCCCATC
AGCGGAGTACATCTTTGCACGAATATCTTGAACTTCGGAATGGCTGGTAATTCTTCTTCTTTGAAAGACGTGTAACTGGT
AATGATAAATGAAGGGAAGTGGTAATTGAGGATTAGGAGGTCCCAGGGAACACCCGCACAACCATTTGATCAAAGATGAC
GCGGATGACAATTTCGGATGGAGTAGCATTTTACGCTGAACGAGACATTCTGGCGGAGAACGTGAAGGCGTGTAGATTCC
TCTCTTCTACCCCGCGACCCCCCTACCAACGGGAAAGCATATCATGTCAACTCTATATGATCATGCAAAGCAAAATGACA
ATGAAACTCT
>chr4D_373
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----------------------------------------------------AAAAAAAAACATCCACCACGGCACCTCA
CCACCGTCCA-TCCAATCCACCACAACAGCTAACTAGAAACTCGTGCTGCC--------CTCGTTGCATTCCAGCTCTCC
ACCAGCCACGAGCGAGCGCAAAACCAAAACGGCACTCCCCCTGGCCTGCGGGTCCCACGTGTATCAGACCCCACGCGTCG
GTGACTCTGCATCAGGACGTACGTGGCATAGTTGTTCCTTCTCCTGCC--------------------------------
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---------------------------------------------------------------------GAGCTGGAACC
CTGCACAACCAGATATACCTCGTCGTAGGGCTTATCTTCCACCGACAGGTGGGTCCTGGACCCCGTGTGTGT--------
--------GACTAGCTGGTTGCGTGGAGGCTAGGGTAGCGTGGGCCCCGGTCAAGTGGCGGCGCCCACAGCTGTATCAAC
--ACAACCAGCTTGGCGGCGGTTGGTTGACACCACAGGCAACTGACAGGTGAACCTCGATAACTGTGGGCCAGCACGTCA
GTTGGAGATCAGCTGCCCACTTGCGGCGGTATTACTGTTGCGCCACCGCTCCGCGGTATATAACCCTCACACCATCTCTT
CCGTCCATCCACACCGAGAAAGGAAAAAGATACGGAGAACAGAGGAAGAAACAAGAAATATATATCCATGTTGCAGCGAA
CGGCCTCGGCGTCGGCCGCCATGGTGTCCGGCTACCGGCAGAGGGAAGCCGTGGGTGCGTGTACAGAGAGCCTCGGGTCG
GAGAGCGGCGACGTCGGCGGGGATATCGAGCAGCTCCCGGCCGTCGTCGGCGCCGGAGCAAACGAGGACGGGCACGGCGC
GGGAATGGTGGAGCATCAGGATTTGGCGGCGAAGAGGCGGCGAGGCGACAGGCTTCTCCCTCCGGTGATGCCGAGGCCGG
CCGAGGCGTTCATGCGCGCGGAGCGGCGTGGCGGGCGGCTCATCCTCACCCAGGTGGTGCGGCCGGTCGAGCGGCCGCGG
GAGGTGTTCTGTGCGTCCCGCGCCGACGGGCGCCTGCGCCTGCGCTTCGCTGAAGAAGACCGCTTGTACGGCGAGGAGCG
CCAAGCGCCCGAATCAGCCGAGACGGAGAGCGGGGCCCTGGTCGGTGGCTGCGGCAACGGCGTGGGGTTGCGCCAGGCGG
CCACCGGCACCGGGAGGCGCGTCGAGATCGGCGCCGTGATGGGGATATGATCGAGGCCATGAGGTCGGCCGAGTCGTGCC
TCGATTCGAATGCGGCCGCGTTGCTGCTGGAG------------------------------------------------
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>chr3B_505
CAAAACCGTACTC-------------------------------------------------------------------
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------------------------------------CCCCCTGGCCTGCGAGTCCCACGTGTATCAGACCCCACGCGTCG
GTGACTCTGCATCAGGACGTACGTGGCATATGTGTAACTTTGTGTGCTCTCGCCGTACCCCCTTTTTTGCAGATAATACA
CGAAATTTCCTCCTCTAGGAAAAACTAGGGTTTGTGCATCTCGCCGGCTCCGCCGCAGGTCCACCCGTGTTTTCAGTGAC
CCTAGGGCCATGGGACGCGGTGGATCCTGGCAAGGACCGGCGGAAGGGCTCCGTTGTTAGTCGTTCCTTTGAGATTTATT
AGGGTTTGTGTCCTGCTCAGGAAGCCGAGACGGCGACGGCTCCCTGAAGATGAAATAAAGGTCTCTTCGCCTAGTTCTCA
TTTCAGTGGTGCGTCTAGCGTCGTTGGTGAGCGTGTGGAGGTGTGTCTCCGGCGGACCCATCCTCGGGTGATTTGCTCGG
ATCTGGTTGTGGTTAGTCTATGTTCGTGTGTCTTCAGATTGGATCCTTTCGAGCTACTTTATTCTTCATCGACGGCGTTT
GCTGTTCTGGTGCGCTGGTCCTACTGGGCCTTAGCACGATGACTTCCCGTCTGTCTACTATAACACGTTGTGCCCGACTC
CGACGAGGGCGTGCCTTCGGCTCGCTTCATTGCTTGTAGTCGGTGCTATGTGGTCTACAGATCTGGGACTTTTTCACTAT
TCTGACTCTTTCAGCAAACTTTGTCACAAAATGAACTCGACATGAAAGTATTTCACGATCTGACCCTTTTTAGCAACGCC
ATAGCCCGCGGCGTTTCTGCCCAACATAGCAACGCCGAGGTAGCTAGCGCTTCTGTCCAACAAAGAAACGCCGAGGTAGG
TCGCGTTTTGGACCATGTAAGAAACGCCATAGGCGTTGGCGTTTCTGACCAAGAAACAAACGCCATAAGTCTTGGCGTTG
TGGCCCTGGTTATCGAGTAGTTTCTTACCTTGGCGTTTCTAAGAAGGTCGGAAACGCCGCTAGCCTTGACGTTTCTGGCC
TGGCGTCTCTGGCAGCTGAGGAGGAAGACCCTGACGAGGCAGCGAGTGGGTTGGGTGCTAGCGAAGAAATGCCAAGGCCT
TTGGCGTTTCTCATCTGGTCCGAAACGCGAGCTACCTTGGCGTTTCTTTGTTAGATAGAAGCGCTAGCTACCTCGGCGTT
GGTATGTTGGGCAGAAACGCCGCGGGCTATGGCGTTTCTAAAAGGGTTAGATCGTGAAATACTTTCATGTCGAGTTCACT
TTGTGACAAAGTTTGCTGAAAGGGTTAAAATAGTGATTTCGGCCACAGATCTGGATGTAATTTTTATTATTTCTTGTATT
TGTTGTACTGCCACGATTGAAATGAATTGCCACGGTTGAAATGAATAGATAGAAAGTTTTCTGGAAAAAAAACTGGGACC
CTGCACGACCAGATATACCTCGTCGTAGGGCTTATCTTCCACCGACAGGTGGGTCCTGGACCCCGTGTGTCTGCAACACG
ATGAGTACGACTAGCTGGTTGCGTGGAGGCTAGGGTAGCGTGGGCCCCGGTCAAGCGGCGGCGCCCACAGCTGTATCAAC
TAACAACCAGCTTGGCGGCGGTTGGTTGACACTACAGGCAACTGACAGGTGAACCTCGATATCTGTGGGCCAGCACGTCA
GTTGGAGATCAGCTGCCCACTTGCGCACGCTGCAGAAACATACGCAAGCGGAGGAATTG----CCCTCACACCATCTCTT
CAGTCCATCCACACCGAGAAAGGAAAAAGATACGGAGAACAGAGGAAGAAACAAGAAATATATATCTATGTTGCGGCGAA
CGGCGTCGGCGTCGGCCGCCATGGTGTCCGGCTACTGGCAGAGGGAAGCCGTGGGTGCGTGCACAGAGAGCCTCGGGTCG
GAGAGCGGCGACGTCGGCGGGGAGATCGAGCAGCTTCCGGCCGGCGCCGGCGCCGGAGTGGACGAGGACGGGCACAACGC
GGGAATGGTGGAGCTTCAGAATTTGGCGGGCAAGAGGCGGCGAGGCGAAAGGCGCCTCCCTCCGGCGATGCCGAGGCCGG
CCGAGGCGTTCATGCGCGCGGAGCGGCGTGGCGGGCGTCTCATCCTCACCCAGGTGGTGCGGCCGGTCGAGCGGCCGCGG
AAGGTGTTCTGTGCGTCCCGCGCCGACGGGCGCCTGCGCCTGCGCTTCGCTGAAGAAGACGCCTTGTACGGCGAAAAGCG
CCAAGCACCTGAATCAGCCGAGACGGAGAGCGGGGCCCTGGTCGGTGGCTGCGGCAACGGCGTGGGGTTTCGCCAGGCAG
CGACCGGCACCGGGAGGCGCGTCGAGATCGGCGCCGTGATGGGGATATGATCGAGGCCATGAGGTCGGTCGAGTCGTGCC
TCGATTCGAATGTGGCCGCGTTGCTGCTGGAG---TAGCTAAGCTGCATTTTTTGTTTTTTTTTCTTATTCTATTTACTA
GC------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
---------SS--------------S--S----------------------SSSSSSSS---------------------
-------------S--------S-------------------------------------------S-------------
----------------------SS---S----------------------------------------------------
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--S--S-------------------------------------------------S------SS-S----------S---
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-----------------------------S-----------------------------S--------------------
-------------------------S-------------SSSS-S-SSSS------------------------------
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---------------------------------------------S-----------------S----------------
----------------S-----------------------------S-------------------S-----S-------
---------------------------------------------------S----------S-------S---------
------------------------S--------------S-------------------------------S--------
-------------S---------S------SS----------------------------S-------------------
----------------------------------------------------------S-------------S-S-----
---------S----------S-----------SSS------------------S---S------S--S-SS-SS--S-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_1926
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------------------------------------------------------------------GCCAAGCTGGAACC
CTACAT--------------------------------------------------------------------------
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>reverse_3678
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-----------------------------------------------------------------------------GAC
GCGGATGACAATTTCGG---------------------------------------------------------------
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