>input_sequence_76956
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----------------------------------ATGTCGACGGCGTCCGAGCAGCAG---CAGCAGCCGCCGCCGCCGC
A------------CCGGGGGTCGTGGAGCATCGGCGGGACGGTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCG
CTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTACGGTGGAGCGGGCGGGACGGCGTGCACCGGACGGGACCCGA
CCCCGAGGCCGGGCCGGCGACGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCCGCCATGCCGGTGT
TCAGGTTCAAGGCGGAGCCGCGCGGGGC------CGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCCATGCAG
GACGGCGACGCGGTGCGCGCCCTGCCTGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCA
CGCCACCTGCCCCGTCTGCCGCGCGTGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAGGACGGCGGAGACCG
CCGGACGGGAGCCGGACCCGGAGAGCCCGGTATAG---------------------------------------------
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>chr2B_1_TraesCS2B01G499500
CTGGAGTAGGTCTTCCCGTCGCTGCAGCGCTCCCCTTGATCGGATGGGGTGAGAGAATATCGGGAGGGGAGTGAAACCGT
ACGAGAATTGTGATCGCGCAGACTGCCAACCCTCTCCCGTACCCCCTTTTATCTAGCGCTGGCGACAGGGGACCTAAACC
ATCAGTTGGTTTGGGTGCCCCCGAGCCTTAGTTGGGATAAGGCCTTTTTCATTAAGGTTATCTTTCTCTTCTTTTTTTCT
TAAACTAATAGATCTAAGTGCCTGTTTAAGCCGTCAGATCAAAACCAAACATCAATCAGTAGGAAAATCTTCTATATGTG
TAGTGTTACTCCCAGGGCCGTACAACACATGCAACACAAATTTTCAAAAGCTATATATGTGTTGCAAAGATGTAAAATTC
TGAATTCTTATCTACTATTCTAGTAGTATCTTTTAGCTGGAACAAGTGATCCTTCTAGAATTCTTTTATACAGAATCTTG
GAGTTTATCTCCATTAAAATATGTTTTTTTTCCCACGCATAGTTTTGAAGCCCTATGATATCAAATCAGGTA------TA
TATTAGGTTTG-------TGTCAAGTGCCTTTTTAGAAGAATTTCTCTAGGCTAGTGCAACGTTACCCGAACTAGCACTC
ATGACATGGACATGATTCTGAAGATTCTACTTTCACCATTAAATTATAAATAAAGATGCTATTATTCGGCTTCATCCCAA
GTCCTGCCATATTTTTCTGAGAGGGAAGTGCTGCCGCCTGGAAGAAGACTGGAGTGTGGAGCTGGCCGCTGGGTAGATTA
TTATTACTAGTAAATGCTATTGGAACGAACTTGGTTAATCTATTCACTGACAGAACAGTATAG-----------------
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----------------------AACATAACTTGACTCTTGCTCCAGCACCGCCGGCCGTAACCTTACACGCCTACAAAAC
CATCATTGCTCGCACCAAGCCAGCGGG--GAGAGAGCAAAGCAAGAA-CCGCACGGCACG-----ACACTCTGCCAG---
----TGGAGTG----ACATCCATCGAT---CGGCATGTCGACGGCGTCCGAGCAGCAG---CAGCAGCCGCCGCCGCCGC
A------------CCGGGGGTCGTGGAGCATCGGCGGGACGGTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCG
CTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTACGGTGGAGCGGGCGGGACGGCGTGCACCGGACGGGACCCGA
CCCCGAGGCCGGGCCGGCGACGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCCGCCATGCCGGTGT
TCAGGTTCAAGGCGGAGCCGCGCGGGGC------CGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCCATGCAG
GACGGCGACGCGGTGCGCGCCCTGCCTGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCA
CGCCACCTGCCCCGTCTGCCGCGCGTGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAGGACGGCGGAGACCG
CCGGACGGGAGCCGGACCCGGAGAGCCCGGTATAGCATGCGTGCGTGCGCCATCCCCGAGCTGTCAGGCCTGGTACAATG
GGAGGTGCTTAGGGAAGGTGTTTAGAAAAATAAATCAGGTTTTCTTAAGCATCGATGCTTATTTGTACAGGATAGACGCT
TAACTAAGCGCCTCTTCTGTAGAAATAGACATCGGTGCTTTAGAAAAACCCAGTTTATTTTTCTAAGCATCTCTCTAAGC
ACCTCCCATTGCACAAGGCCTCAGTATGGGTTGAGGTACTTCTCTTATTATGAGGTTGAGTACATAATGTTTGTGTTAGC
TTGCTTCTATCGGGGCCGAT--------AATTTTATCTCATGGCTTGTCAGTTGTAATCCTACTTGACTTGTGCATATTG
GTGATGATAAGTGAAGAAGTTCTCCAGACCACTC---------------------------TGTAATTAAGTTCGTACGT
GATGTATTTG----------------------------------------------------------------------
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----------------CAATTGTGGCCAGTCAGATGAGGAAATTGTGGATGGATGACG-CGTATGCACCGCTGAAAAGGA
CATGGCAATTCCTTTCGTGGTGGACAATACATTTTTTTAATCCCATGTTCAAGAATGTCCAGATAAAGATAAGATTAAGG
CTTTATACACTACCACAAC----------------GACACCTGAATGGTTGAGCGACCAAGTGCGCGAAATTTACATTTC
TTTAACCACGAGAGTAAATATCTCTGACGCATGAAGCACCGAGGCTAGCGTCACTGT-CATACCTCGGATCGATCATAAT
CCATTTTGGAGTAAGTCGTGGGCAGTGCCGGCGGTAAAAAAAAACTGCATTTCAACCGCTGGGGACTGGCCAGCTGAGCA
TTTTGTCACGTATACGTGACAGATCACGCACCGGCAAAGCCAAGCTGCAGAAGCTGTGCACTCGTGTCGAGCAGAGGTAG
CACACACAAGGGCATTCCATGGAGACTGAAAGGAGATGACATACGCTATCTGCATAAAACTGTGCACTGCTCCCAATGTT
AACCGCGTACACGTCGAGACCAAAATTCGGTGCACTCTGCGCTCCCTCGGGTAC
>chr2A_292
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---------------------------------------------------TCAATCAGTAGGAAAATCTTATGTAGGTG
TAGTGTTACTCACAGGGCCGTACAACACATGCCACACAATTTTTTAAAAAAC---TATGTGTACCAAAGATGTAAAATTC
TGAATTCTTATCTACTGTTCTAG---AATCTTTTAGCTGGAACACATAATCCTTCTAGAATTCTTTCATACAGAATCTTC
GAGTTTATCTCCATTAAAATATATTCTT----CCATGCAGGATTTTTAAGCCCTGTGATATCAAATTAGGTAGTAGTATA
TATTAAGTTTG-------TGTCAAGCGCCTTTTTAGAAGCATTTCTTTAGGCTAGTGCAACATTACCCGAACTAGCACTT
CTGACATGGATATGAGTTCGAAGATTCTACTTTCACCATTAAATTATAAACAAACAT-----------------------
--------ATATTTTTTTGAGAGGCAAGTGCTGCCACCTGGAAGAAGACTGGAGTGTGGAGTTGGCCACTGGGTAGATTC
------CTGGTAAATGCTCTTGGAACGAACTTGGCTAATCCATTCACTGACACAACATTGTACAGTATAACATAATTTAT
GCCATGTTTGGTTTCAATAAGTCACTTGACTTATAAGTCAGGTAACTTAAAACCAGTGACTTATAAGTCACGCCTGTTTG
GTTGCCATCTAACTTATAAGTCATTTGAGCACATCTTCCCATCTTGTTTTTTACGTAAAGATGGTGGGATCCATGCAAAA
GGGGGTGACTTATAAGTTTTAAGTTGGGGTGTAGCAACTTATGACTTATAAGTTAGGGTGACTTATAAGTTGGGTCCGTT
TGGCAAAATAAGTTACTTTTTGCACTTTTTGACTTATAAGTTGGTGACTTATTTGGAACCAAACAGGGCCTTAACTCTTG
CTCACCCCCGCAAAAAAAAAGTAAAATAGCTTAACTCTTGCTCCAGCACCACTGGCCGTAACATTACACGCCAACAAAAC
CATCATTGCTCGCACCAAGCCAGCAGAGAGAGAGAGCAAAGCAAGAA-CCGCACGGCACGGCACGACACTCTGCCAG---
----TGGAGTGACTGACATCCATCGATCGGCGGCATGTCGACGGCGTC---------G---GAGCAGCCGCCGCCGCCGC
A------------CCGGGGGCTGTGGAGCCTCGGCGGGACGGTGGAGCTCGTGGCGGCGTTCACAGCGGTGTGCCTCGCG
CTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTGCGCCGGACGGGGCCCGG
CCCCGAGGCCGGGCCGGCGACGGGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCGGCCATGCCGGTGT
TCAGGTTCAAGGCGGAGCCGCGCGGGGGCGGCGGCGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCTATGCAG
GACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCA
CGCCACCTGCCCCGTCTGCCGCGCTCGCCCTGC---------TCCGGCAGCGAAGGACGGCTCCAAGACGGCAGAGACCG
CCGGACGGGGGCCGGACCTGGAGAGCACGGTATAGCATGCTTG-------------------------------------
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---------------------------------AGGTACTTATCTTATGGGGT--TTGAGTACAGAATGTTTGTGTTAGC
TTACTCCGATTGGGAGTCTGGGACCGACAATTTTGTCTCATGGCTTGTAAATTGTAATCCTACTTGACT--------TTG
GTGATGATAAATAAAGAAGTTCTCCAGATCACTCCGTAACTAAGTTTCTTTTAGAAAGCTTTGTAATTAAGTTCATATGT
GATGTATCCGTAGATACTGACACCCTTTTTCCTAGTTTCAGGAGTAGCAATGTGGACACGTTATTACATAACAGCAGACT
TGTGCTAATTTGAAGGATTGTGATATTGGAATATATTGACCGCACCTCTTCATCTGTTCGAACTTTTGGATGAATTGATT
AAAACATGAGTTCAATACTCGAGACAAGTGGTTTTTTATTGTAGTTTCCGGTATATATTGCACTGTTAATTAATCAATCA
ACCAAACTGCTAATTCCAATTGTGACCAGTCAGGTGAGGAAATTGTGGATGGATGAC-CCGTATGCACCGCTGAAAGGAA
CATGACAC-------------------TACATGTTTTCAGTCCCATGTTCAAGAGTAGTCAGATAAGGATAAGATTAAGG
CTTTATCCACTACCACAAC----------------GACACCTG-ATGTTTGAGCGAGCAAGTGCGCGAAAA--ACATTTC
TTTAGCCACGAGAGTAAATATCTCTGACGCATGAAGCACCGAGGCTAGCGTCA---------------------------
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>chr2D_307
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------------------------------------------------------------------ATCTTCTACAGGCG
TAGTGTTACTCCCAGGGCCGTACAACACATGCAACACAATTTTTCAAAAA-C---TATGTGTTGCAAAGATGTAAAATTC
CGAATTCTTATCT-CTATTCTAG---TATCTTTTAGCTAAAACAAGTAATCCCTGTGTAATTTTTTTATACAGAATCTTC
CAGTATATCTCCATTAAAACATATA---TTTTCCACGCATAG-TTTTAAGCCCTATGATGTCAAATCAGGTA------TA
TGTTAGGTTTGTGTCAACTGTCAAGTGCCTTTTCAGAAGAATTTCTCTAGGCTAGTGCAACATTACCCGAACTAGCACTT
ATGACATGGATACGAGTTTGAAGATTCTACTTTCAACATTAGATCATAAACAAACTTT----------------------
-----------TTTTTTTGAGAGGGAGGTGCTGCCACCTGGAAGAAGACTGGAGTGTGGAGTTGGCCACTGGGTAGATTC
------CTAGTAAATGCTCTTGGAACA---TTGGCTAATCTATTCACTGACAGAACATTGTAGT----------------
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-------------------AGTAAAATAACTTAACTCTTGCTTCAGCACCACAGGCCATTACATGGCACACCAACAAAAC
CATCATTGCTCGCACCAAGCCA----ACAGAGAGAGCAAAGCAAGAA-CCGCACGGCACG-----ACACTCTGCGAG---
----TGGAGT-----ACACCCATCGAT---CGGCATGTCGACGGCGTC---------GTCGGAGCAGCAGCAGCCACCGC
A------------CCGAGGGTTGTGGAGCCTCGGCGGGACGGTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCG
CTGTACGGGGCGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTGCGCCGGACGGGGTCCGG
CCCCGAGGCCGGGCCGGCGGCGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCGGCCATGCCGGTGT
TCAGGTTCAAGGCGGAGCCGCGCGGGGC------CGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCCATGCAG
GACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGCTGCGTCGACGTCTGGCTGGGCGCGCA
CGCCACCTGCCCCGTCTGCCGCGCGCGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGGC-----------GGAGACCG
CCGGACGGGAGCTTGACCTGGAGAGCCCGGTATAGCATGCGTGCGTGCGCCATCCCCGAGCTGTCAGTG-----------
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--------------------------TGGCTTGAGGCACTTCTCTTATGGGTT--TGAGTAC----ATGTTTGTGTTAGC
TTGCTTCGATTGGG-CCGAT--------AATTTTGTCTCATGGCTTATCAGTTGTAATCCTACTTGACTTGTGCATATTG
GTGATGATAAGTGAAGAA-----------------------------------------------ATTAAGTTCGTACGT
GGTGTATT-G----------------------------------------------------------------------
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----------------CAATTGTGGCCAGCCAGGTGACGAAATTGTGGATGGATGAAACCGTATGCACCGCTGAAAGAGA
CATA-CAATTCCTTTTGTGGTGGACAATACAT-TTTTCAATCCCATGTTCAAGAGTGGCCAGATAAGGATAAGATTAAGG
CTTTATACACTGCCACAACCAGTACTGGCCACAACGACACCTGAATGGTTGAGTGACCAAGTGCGCGAAATATACATTTC
TTTAACCACGAGAGTAAATATCTCTGACGTGTGAAGCACCGAGGCTAGCGTCACTGTTCATACCTCGG-TCGATCCTAAT
CCATTTTGGAGCAAGCCGTGGGCA--------------------------------------------------------
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>chr4D_868
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---------------------------------------GCGCCAGCACCACCGGCCGTTACACTACAAACCAAGAAAAC
CATCATTGTTCGCACCAACCCACCCAACACACAGAGCAAAGCAAGAAACCGCACGGCACG-----CCACTGCCAGTTCCC
TGCTTGAAGTG----GTGTCCATAGAT---CGGCATGTCGACGGCGGGAGGCCCGGCG---GGGACGACGGTGTCGCAGC
ACGGGGGCGGCGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCA
CTCTACGGGGTGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTGCATCGGACGGGATCCAG
CACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCTGGCAGCCATGCCGGTGG
TCAGATTCAAGGCGGAGGCGCGT---GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGGTGTGCCTGAGCGCCATGCAG
GACGGCGACGCGGTGCGCGCCCTGCCCGGGTGCAGGCACGCGTTCCATGTCGGCTGCGTCGACGTCTGGCTGTGCGCGCG
CGCCACCTGTCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAGGAGGGCGGAGACGG
CCGGACGGGAGCCGGTCCTGGAGAGCCCGGTATAGCATGCGTGCG-----------------------------------
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>chr4A_871
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------------------------------------------CCAGCACCACCGGCCGTTACACTACAAACCAAGAAAAC
CATCATTGTTCGCACCAACCCACCCAACACACAGAGCAAAGCAAGAAACCGCACGGCACA-----ACACTGCCAGTTCCC
TGCTTGAAGTG----GCGTCCACAGAT---CGGCATGTCGATGGCGGGAGGCCCGTCG---GGGACGACGGCGTCGCAGC
ATGGGGGCGGCGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCA
CTCTACGGGGTGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTGCATCGGACGGGATCCAG
CACGGCAGCCGGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCTGGCAGCCATGCCGGTGG
TCCGATTCAAGGCGGAGGCGCGT---GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGGTGTGCCTGAGCGCCATGCAG
GACGGCGACGCGGTGCGCGCCTTGCCCGGGTGCAGGCACGCGTTCCATGTCGGGTGCGTCGACGTCTGGCTGTGCGCGCA
GGCCACCTGCCCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAAGAGGGCGGAGACCG
CCGGACGGGAGCCGGACCTGGAGAGCCCGGTATAGCATGCGTGCGTCGC----CCCCGAGCTG-----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S---
---------------------------------------S---------SSSSSS-------------------------
-----------------------SSS---------------------S-------------------------------S
----------------------S--S-----S--------------S---------------------------------
-------------------------------------------------------------S-----------------S
----------S----S-S--------------------------------S---S--SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--------S------------------S-------------------------S-----S-----------S
SSSSSS------------S---------------S----------------------S-S--------------------
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------------------------S-------S-----------------S-----------S---------S-------
------------------------S-S-----------------------------------------------------
------------------------------------------------S-SS-S-SS----S------------------
---------------------S-------S--------------------------------------------------
-------------------------------------------------------------------------------S
------------------------------------------------------------------S-------------
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--------------------------S-----------------------------------------------------
-------------------------S------------------------------------------------------
------------------S------------------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------SSS-SSS---------S---------------
-------S--S---S-------------------S---------------------------------------------
----------------------------S---------------------------------------------------
--------S-----------------------------------------------------------------------
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---------------------------------S-----------------------S------------------S---
----S----------S----------------S----S----------------S--S--------S-------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------S------S----
-----------S---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_724
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----------------------------------------------------------------TTCGGCTTCATCCCAA
GTCC----------------------------------------------------------------------------
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>reverse_2170
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---------TGCACAAGGCCTCAGTATGG---------------------------------------------------
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