>input_sequence_76954
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-------------------------------------------------------------------------------A
TGGCCGGGAGCGCGAGGTCGGCGGCCGCGAAGCACGCGTACCGGATGTTCACGCCGTCCCGGAGCGCGGCGTCGCGGGGC
AGCCCCGGCAGCGCGGCGGACGAGTTCGACGAGTCGGACGTCTGGGGGTCGTTCGGTGCGGCGGACTCCGGCCCCGCGGA
CCTCGCGCGCGCTCGCACGATCCCGTCGTCCGCCCGCGCCAGCGGCCGGAAGAAGCCGCTGGACCATGCCACCGCGGGCG
C------CGGCGCCGTGCCCGGGTCGCTGCCGATGAGCATCCCGGACTGGCAGAAGATCCTGGGGGTCGAGTACAGGGAC
CACCACGCCGGCGAGTGGGAGCTCTACGGCGACGATGACGACGACTACGGCAAGGTGGGCGCCGGCTGCCGGAGCGGCTC
GGTGGTGCCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCCGCGTCCCTGTCGGTGCACGAGGGGATCGGCAGGACGCTCA
AGGGGCGCGACCTCAGCCGCGTCCGGGACGCCGTCTGGAAGAGGACCGGCTTCGAGGACTGA------------------
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>chr2B_1_TraesCS2B01G397000
ATCCCCAACAGTTGGTGTGTACATATTTTGTTCATTTGCTTGTGTGTTTTAGCTCGAAAAACACCGCCACAGATTT-GCT
AGTGCAGCCTAA-AAAATATTGCTCGCTCGGTACTACGAGA------TGTTTTGGAGCGACGAATCGAGTTGGCACACAA
TTCCGTAATATTGGCGACACGAGCTATGTCAAGGTTAGTGGCAGCATGATCATTCATTGGCATTGTGCAAGATGTCAAGT
GCGTCAAAGATTGACGTTAC--GGGGCGGTGTTTGAGGCAGAGGTTTATGTCGGCCCTTCGATCATCCATGTCCACCTAC
ACCT---------TGTAAGTCCGCCTTAGCTTCTGCCTCTATATTCCACGTGGCATGTGTCATCGACCCGTCGGGTGAGC
CCTTTTAGAGGCGATTTGATATGAGTACATGGTATAACGAAACATTCTAAATATACCACACAATGTTCACAAGTTTACTA
AAATTGCCACACTCATGATAATTTTCTTAATTGTTTTAGTCCATTCCATGACAAGTAATTTGGTACGGAGATGGTATATG
TTTCCTACAAATCAAATGCATACTGAGGAAACTTTCCTTTGGGTCATATTCATTATGTTTTTCTCATGAAAATCCTCCAA
ACCGAGGCCTTGGAGAAATGCAATTAAAAGGTCTTATTGTCCCCTAAAAAAGGTCATATTGTACTTGCGGGGAAAATGTG
TGTACAACCATCATGCCGGACAAGTGTGAGCGTATGGCACAGCCACGCTACGGTGCACCCTGCGGAAGGCACGCGAGGCT
AGAACCGTCATTCTAAGCACAAGTCTTATCTGCTTCCGGTCCCT------CTCTCACTGCTGCGCGGACCCGCACACTAG
GCCATGCTCCTATAAAATCCAACCTGG-CGAACCAACCCACACAAACT-CCAAAACCATTGCCCTCCTCACAACCCCGCA
CCCTTCCCTCCGCCAAAGACCGGTGGTTGAGGCGTCACGGT-------AAGCGCGAGGCACAAACGA-----GAGCGCCA
TGGCCGGGAGCGCGAGGTCGGCGGCCGCGAAGCACGCGTACCGGATGTTCACGCCGTCCCGGAGCGCGGCGTCGCGGGGC
AGCCCCGGCAGCGCGGCGGACGAGTTCGACGAGTCGGACGTCTGGGGGTCGTTCGGTGCGGCGGACTCCGGCCCCGCGGA
CCTCGCGCGCGCTCGCACGATCCCGTCGTCCGCCCGCGCCAGCGGCCGGAAGAAGCCGCTGGACCATGCCACCGCGGGCG
C------CGGCGCCGTGCCCGGGTCGCTGCCGATGAGCATCCCGGACTGGCAGAAGATCCTGGGGGTCGAGTACAGGGAC
CACCACGCCGGCGAGTGGGAGCTCTACGGCGACGATGACGACGACTACGGCAAGGTGGGCGCCGGCTGCCGGAGCGGCTC
GGTGGTGCCGCCGCACGAGCTGGCGTGGCGCGGCCGCGCCGCGTCCCTGTCGGTGCACGAGGGGATCGGCAGGACGCTCA
AGGGGCGCGACCTCAGCCGCGTCCGGGACGCCGTCTGGAAGAGGACCGGCTTCGAGGACTGACCGGA--------GAGCA
TGCATGGCATCGGCATGGCTCGATCGCCCGCTGCTGGTCTAGCAAATATGCGCCGCAGTATAGGCCTGAAGCGAGATCAT
CACTAGCAATTGTTTGTCTCGTTTCGGGCCCTCCTTTTTGGCATGCGTAGCAAAAGCAAACCGTAGTAGCGAAGGCATGC
GATCCTGACGGAAGGAGAGCGGGTGGGTGTTCGTT--------CATGGCGTGGCAAATTTCAGGGGAAAAG---------
-----GCTAGGTTGGTTGGTCAGGTGTCGGCGTGCGTATTTTATTTCTTCCTTTCGAGTATGGGTAGTCTAAGCTTTTTG
CAGTGGGCTGTACTGCTGTTTGTGCGCGAAGTTGCAGAACAGAGAAGAAATGCTTGCCTTCGCCGGCCATCCCGTTCTCA
TCATACATGAGCATAAATGGT-AAAGAAATTGCTTTTTGTTGAGCGTTACACCTTTATGATGTGACAAAATTACTCATAA
TTTTTTGTTAGAAACAACACAGACGCTCATATAGACGCACATATCCTTACCATATTACCCTATGAATGTACACCCTGCAT
CGCGTTATCAACGGATACATCGTCTTCCATTGTACCAAACCAACTCAGTTACAATCATCCCAATCCTCCATTATATCAAA
CTCACCCTGATGGGCTGAGGATACAACTATCCTCCTATAATCATCGAATAACAGGTTGTTTCTTAGATTTCTTTCTCCAA
AATAAAGTTATAAA-----------CGACACCGTGGCCCTACTG--CAGTGAGCATGCACTGACATAATTGACCACTAAT
AATATAGAACAAAAGTAGACTC----------------------------------------------------------
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--------------------------AATTATGGGAAGTATAGCTTCTGTAGTCTACAATCTCTTTTTTTTTTAATCTCG
TACGTGCTAGCTAG---------------------------------------------------TAGAGGTCCCGAACC
-----AAAAGTTGATGGAGAGCGCCAGCTCGATTTTAAATTTCTATCTAATCGGGGCAGGAGGTTGGGAGTCTCCGCGCA
AGAGTAGG----ATCGATCGATCAATAATTGATTATCCCGTTAGTAGTAT
>chr2A_11
----------GTTGGTGTGTACATATTTTGTTCGTTTGTTTGCGTGTTTTAGCTCGCAAAACACCGCCACGGAATT-GCT
AGTGCAACCTAACAAAATGTTGCTGGCTCGGTACTACGAGACGGATCTGTTTTGGAGCGATAGATCAAGCTGGCACACAA
TTCCGTAATATTGACGGCATGAGCTATGTCAAGGTTAGTGCCAACATGATCACTCATTGACATTGTGCAAGGTGTCAAGT
GCGTCAAAGATTGACGTTGCGTGGGGCGGTGTTTGAGGCAGTGGTTTATGTTGGCCGTTCGATCACCCATGTCCACCTAC
ACCGAAGCGCCCGTGTAGGTCCGCCTTAGCTTCTGCCTCTATATTCCATGTGGCATGTGTCATCGACTTGACGGGTGAGC
CCTTTTAGAGGCGATTTGATATGAGTACATGGTATAATGAAACATTCCAAATATACCACACAATGTTTACAAGTTTTCTA
AAATTGCCACACTCTGG-TAATTTTCTGAATTGTGTTAGTCATTTTCGCGACAGGTAATTTGAGATGGAGGGAGTATACG
TTTCCTACAAATCAAATGCATATATAGGAAACTTTCAATCGGGTCATATTCATTAGGTTTTTCTCAGGAAAATCCTCCAA
ACCAAGGCCTTAGAGAAATGCAATTAAAAGGTCATATTGTCCCCTAAAAAAGGTCATATTGTATTTGCGGGGAAAATGTG
TGTACAGCCATCATGCCGGACAAGTGTGAGCGTATGGCACAGCGACGCAACCGTGCACCCTGCGGAAGGCACGCGAGGCT
AGAACCGTCATTCCAAGCACAAGTCTTATCTGCTTCCGGTCCAT------GTCTCGCTGCGGCGTGGACCCACCCACTAG
GCTATGCTCCTATAAAATCCAACCTGGACGAACCAACCCACACAAACT-CCAAAACCATTGCCCTCCTCACAACCCCGCA
CTCTTCCCTCCGCCAAAGACCGGTGGTTGAGGCGTCACGGT-------AAGCTCGAGGCACAGACGA-----GAGCGCCA
TGGCCGGGAGCGCGAGGTCGGCGGCCGCGAAGCACGCGTACCGGATGTTCACGCCGTCCCGGAGCGCGGCGGCGCGGGGC
AGCCCCGGCAGCGCGGCGGACGAGTTCGACGAGTCGGACGTCTGGGGCTCGTTCGGCGGGGCGGACTCCGGCCCCGCGGA
GCTCGCGCGCGCCCGCACGATCCCGTCGTCCGCCCGCGCCAGCGGCCGGAAGAAGCCGCTGGACCATGCCCATGCCGGCC
C------CGGCGCCGTGCCCGGGTCGCTGCCGATGAGCATCCCAGACTGGCAGAAGATCCTGGGGGTCGAGTACAGGGGC
CACCACGCCGGCGAGTGGGAGCTCTACGGCGACGACGACGACGACTACGGCAAGCTGGGCGCCGGCTGCCGGAGCGGCGC
GGTGGTGCCGCCGCACGAGCTGGCGTGGCGCAGCCGCGCCGCGTCCCTGTCGGTGCACGAGGGGGTCGGCAGGACGCTCA
AGGGGCGCGACCTCAGCCGCGTCCGCGACGCCGTCTGGAAGAGGACCGGCTTCGAGGACTGACTGACCGGAGACGGAGCA
TGCATGGCATCGGCATGGCTCGATCGCCGGCGGCTGGTCCAG----TATGCGCCGCAGTATAGCCTCGAAGCGAGATCAT
TACTACTAATTGTTTCGCTCGTTTCGGGCCCTCCTTTTTGGCATGCGTAGCAAAAACAAACCGTAGTAGCGAAGACATGC
GATCCTGACGGAAGGGGAGCGGGTGGGTGTTCGTTCGTTCGTTCATGGCGTGACAAATTTCAGGGGCACCTGGAGGAAAA
GGCTAGCTAGGTTGGTTGGTCAGGCGTCGGCGTGCGTATTTTATTTCTTTCTTTCGTGTAGTCT-----TAAGCTTTTTG
CAGTGGGTTGTACTGCTGTTTTTGGGCGAAGTTGCTGAACAGAGAAGAAATGCCTGTCTTT----GCCAACCCGATCTCA
TGATACAGGAGCATAAATGGTAAAAGAAATTGCTTTCGGTTGAGTGTTACACCTTTCTGAAGTGACAAGATTACTCACAT
TTTTCTTCCAATAT------------------------------------------------------------------
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------------AA-----------CGACACTGTGGCCCTACTGAACAGTGAGCACGCACTGACATAATTGACCATTAAT
AATATCTATCGGATGTGTCTAGCTCTCATCTATACTAGATAAAGTCTACTCTAACTCCTACACCGCCGAATTCTACGC--
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-----------------------------------GGAGATTCATAGGTTTTTCCCCATTGATTTTGCTTGGTTAATCAG
CAGTGTAGGAGTTAGATGAGACATTGTAGATGAGAATTAGCAAATTCGCT-ATCTGAAAAATACACATATTGAATTATGG
GAAGTTTCCCCGCAAAAAAAAAAAAGAATTATGGGAAGTTTAGCTTCTGTAGTCTACATCTGGTAACA------------
------CTAGCTAG---------------------------------------------------TAGGGTCCCAGTTCC
AAAAGAAAAGCTGATGGAAAGCGGCAGCTGGATTTTAAATTTCC----AATCGGGGCAGGAGGTTGGGAGTCTCCGCGCA
AGAGTAGGATCGATAGATCGATCAATAATTGATCATCC------------
>chr2D_11
----------GTTGGTGTGTACATATTTT--TCATTTGTTTGCGTGTTTTAGCTCACAAAACACTGCCACGGAATTGGCT
AGTGCAACCTAACAAAATATTGCTCGCTCAGTACTACGAGACAGAACTGCTTTGGAGTGACAGATCAAGCTGGCACACCA
TTCTGTAATATTGGCGGCACGAGCTATGTCAAGGTTAGTGGCAACGTGATCATTCGTTGGCATTGTGCAAGGTGTCAAGT
GCGTCAACGATT-ACGTTGTGTGGGGCGGTGTTTGAGGCAGTGGTATACATCGGCCCTTTGAT-ACCCATGCCCACCTAT
ACCAAAGTGCCTGTGTAGGTCAGCCTTAGCTTCTACCACTATATTCCACGTGGCATGTGTCATCGACCTGACGGGTGAGC
CCTTTTAGAGGGGATTTGAGATGGGTACATGGTATATTGAAACATTCTAAATATAGCACATAATGTTCACAAGTTTTCTA
AAATTGCCACACTCCTCATAATTTTCTTAATTGTGTTAGTC---------------------------------------
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>chr2D_669
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-----------------------------------------------AAAAGGTCATATTGTACTTGCGGGGAAAATGTG
TGCGCTACCATCATGTCGGACAAGTGTGAGCGTATGGCACAGCCACGCAACCGTGCACCATGCGGAAGGCACGCGAGGCT
AGAACCGTCATTCCAAGCAC-AGTCTTATCTGCTTCCCGTTTCTCTCTCACTCTCACTGCTGCGCGGGCCCGCCCACTAG
GCTGTGCTCCTATAAAATCCAACCTGGACGAACCAACCCACACAAACTCCCAAAGCCATTGCCCTCCTCACAACCCGCAC
TCTTTCCCTCCGCCAAAGACCGGTGGTTGAGGCGTCACGGCAAGCGCGAAGCGCGAAGCACAGCGGAAACGGGAGCGCCA
TGGCCGGGAGCGCGAGGTCGGCGGCCGCGAAGCACGCGTACCGGATGTTCACGCCGTCCCGGAGCGCGGCGTCGCGGGGC
AGCCCCGGCAGCGCGGCGGACGAGTTCGACGAGTCGGACGTCTGGGGCTCGTTCGGCGGGGCGGACTCCGGCCCCGCGGA
CCTCGCGCGCGCCCGCACGATCCCGTCGTCCGCCCGCGCCAGCGGCCGGAAGAAGCCGCTGGACCATGCCCATGCCGGCC
CCGGCGCCGGCGCCGTGCCCGGGTCGCTGCCGATGAGCATCCCGGACTGGCAGAAGATCCTGGGGGCCGAGTACAGGGAC
CACCACGCCGGCGAGTGGGAGCTCTACG---------ACGACGACTACGGCAAGGTGGGCTCCGGCTGCCGGAGCGGCTC
CGTGGTGCCGCCGCACGAGCTGGCGTGGCGCAGCCGCGCCGCGTCCCTGTCGGTGCACGAGGGGGTCGGCAGGACGCTCA
AGGGGCGCGACCTCAGCCGCGTCCGCGACGCCGTCTGGAAGAGGACCGGCTTCGAGGACTGACCCGA--------GAGCA
TGCATGGCATCGGCATGGCTCGATCTCCGGCTGCTGGT--------------CCGCAGTATAGGCTCGAAGCGAGATCAT
TACTA---ATTGTTTCGCTCGTTTCGGGCCCTCCTTTTTGGCATGCGTAGCAAAAACAGACCGTGGTAGCGAAGACATGC
GATCCTGACAGAAGGAGAGCGGGTGGGTGTTCGTTCGTTCGTTCATGGCGTGACAAATTTCAGGGGCACCTGGAGGAAAA
GG---------TTGGTTGGTCAGGCGTCGGCGTGCGTATTTTATTTCTTTCTTTTGTGTAGTATGTGT---AGCTTTTTG
CAGTGGGCTGTACTGCTGTTTTTGGGCGAAGTTGCTGAACAGAGAAGAAATGCTTGCCTTT----GCCATCCCGATCTCA
TGATACAGGAGCATAAATGGTAAAAGAAATTGCTTTCGGTTGAGCGTTACACCTTTCTGATGTGACAAGATTACTCACAT
TTTTCTTCCAATAT------------------------------------------------------------------
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------------AAAGTTACATAAACGACACCGTGGCCCTACTGAACAGTGAGCACGCACTGACATAATTGACCATTAAT
AATATCTATCGGAGTAGATTAGAAATAACTACG----------------TCTAACTCCTACACCGTCGAGTTCTACGCTC
TCGTCTACTCCCTCGCTTTCTAAATATAAATCCTTTTAGATATTTTAATATGAAGTACATGCCAATAAAAAAATGATCTA
CACGCTAAAATATATCTCATCTATATTAAAATCTATGTAATCTATATTAAAATATGTAAAAAGACTTATATTTAGAAATG
AAAGAAGTAGATAAGAAATAAAGTCGAATTATATGGGAGATTCATAGTTTTTTTTTCTTTCATTTTGTTTGGTCAATCAG
CAGTGTAGGAGTTATACGAGACATTGTAGATGAAAATTACCAAATTCGCTTATCTGAAAAATTTATAGATTGAATTATGG
GA-------------------------------GGAAGTTTAGCTTCTGTAGTCTACATCTCGTAACA------------
------CTAGCTAGTACTCCCTCCGCTCTTATATTTATGTGATTCACAGAGGGAGTACTAGGGTCTAGGGTCCCAATTCC
AAAAGAAAAGCTGATGGAGAGCGGCAGCTCGATTTTAAATTTCT----AATCAGGACAGGAGGTTGGGAGTCTCCGCGCA
AGAGTGGCATCAATTGAT--------------------------------
>SNPs
SSSSSSSSSS----------------------------S---S-------------S-------------S--S------
------S------------------------------------------------------SS---S--S----------
----------------S--------------------------S---------------------------S--------
------------------S----------------------S-----------------------S--------------
---S-------------S--------------------------------------------------S-S---------
-------------------------------------S--------------------------------------S---
--------------S-------------------S------SS--S-SS----S--------SS-S----SSS-----S-
----------------------SSS-----------SS-S---------------S----------S-------------
---S-------S---------------------S----------------------------------------------
------------------------------------------------S--S----------------------------
-------------S-----------------------------------------------------------S------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
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-----------------------------------------------S--------S-S---------------------
------------S---------------------------------------------------------SSS--S---S
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-----------------------------------S--------------------------------------------
-------------------------------S--------------------------------S---------------
-------------------------S------------------------------------------------------
----------------------------S----------S--SSSS-------------------SS-------------
S----SS--------SS--------------------------------------S------------------S-----
----------------------------------------------------S-------------S-SSS---------
------------------------S------------------------S------S---SSSSSS--S-----------
---------------------S--S----------S------------------------SSSSS---------S-----
-S-----S----------------------------SS------------------S-----------S--------S-S
----S-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------------------------------------------S-------------------S----
-----SS-S-SS-S--SSSSSS----------------------------------------------------------
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---------------------------------------S------------------SSSSS-SSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------S-SS--S-SS--
----------S------------S--------------------SSSS--------------------------------
--------------S------------------S----SSSSSSSSSSSS
>forward_142
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------------------------------------------CGAGATGTTTTGGAGCGACG------------------
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>reverse_2152
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-----------------------------------------------------------------------ACCCTGCAT
CGCGTTATCAA---------------------------------------------------------------------
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