>input_sequence_76940
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-----------------------------------------------------------------------ATGGCGGGC
GTGAGCCGGAGCATGGTGGCGCCGCTGCTGGTGCTGAACCTGGTGATGTACATCGTCGTCATCGGGCTCGCCAGCTGGAA
CCTCAACCACTTCATCAACGGCACCACCAACTACGCCGGCGTGGCCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCG
CCATCCTCGCCGGCGTCGTGGGCGCCGCCTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTC
GCCACCAGCGCCTCCTCGGCCCTCGTCGCCTGGGCCATCACGGCGCTCGCCTTCGGCCTCGCGTGCAAGGAGATCCACGT
CGGCGGGCACCGCGGCTGGCGCCTCCGGGTGCTCGAGGCCTTCATCGTCATACTCGCCTTCACCCAGCTGCTCTACGTCA
TGGCGCTCCACGCCGGGCTCTTCGGCGGCCAGTTCGGTGGCGCAGGTGCGTACGGCGCGGAGCACCAGTACGGCGACCAC
CAC---CACAAGGGCATGGGCACCGCCGCCCCCGCAACCGCCAGGGTCTGA-----------------------------
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>chr1A_1_TraesCS1A01G037200
GCTCGGCAAATCGCTATGTGGAGTAGAAGCTAGTTTCAGGAAGCTGATTTTGAGGAGTTTTGAAAGTTTGGAGAGGATCA
GAACAAACCCTTACAGTAGGCCAATTGGCAATAGCGGCGGCGCG--CGGCAGCCTCCTTGGTCGCCTTCTTATCAGCAGC
AGCCTTCTCGGCAGT--GAGTCTCTCGGCTTCGGTGGACATCGTAATGACAGAAGTGACGCGAATGTAGACGACGTAATG
GATGCAGACGAAT------------TCATGTAGGAGACAGTCCCCAAAAATCTAATCACGCC------------------
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--------------------------------------------------------------------TCTCCTGTCTCG
GATTCATAGAGCGCCTG-------------------------------TTAATCGCACAGGTATGAGCTCTTCTCGGCTC
ATTCCCACGTCCACATCG------------------------------TTGCGGGAACCATTTCTCTTCTCAAACTTCAA
TAGCATGTGGAAAAGAATCCCTTATAAAAAGGTCTAATTCCTCCC-----------------------------------
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--------------------------------------------------CTATTAGCAGGGTGAGA------CTAAACT
GCCCATTATATCCCT-----TGACACGTACAAAGGC--------------------------------------------
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------GCTTAGAGATTT-TCCCACCCTATGTTTC-----------AACATTTTGCCTGC-------CGCTAGAAATGGT
TTACGCACCATAAACCCCAGAATTAAGAAGCTCTGTTTTTTTTAGCAAAGTGGAGTGAACACCGAACTTCGGACTGAAGC
AACCGATAGCGCAGGGTAGTGTGGTAAATGGGCACGAGCGCACGCACATGTAAATGGGCA-----CGACCGTCAGCCCGC
CACGTACGGCCGGGAGCTGAGTTAGGAGTACGTACGAGAAGCGCTGGAACCATCCACCCGGCGTCTCCCGCCAACGGCTA
CCGGAAGCAGCTTGGTGTAAAGCCCCATGCGCGTCTCCGGCCACGCGTCCAACACCTGTAAGCCGCGGATCACACCTGTC
CCGCTTCTCGCTCCCTATATATTTTATCCCACTACACTCCAGATCAAATCACCCACAGGCCACAGCTAAGCTTCC-----
---ATTCTTCCATCCAGC-----GACGTAGTGTACGTGCAAACAAGTTGGACGAAAC----CATCCAG-CAATGGCGGGC
GTGAGCCGGAGCATGGTGGCGCCGCTGCTGGTGCTGAACCTGGTGATGTACATCGTCGTCATCGGGCTCGCCAGCTGGAA
CCTCAACCACTTCATCAACGGCACCACCAACTACGCCGGCGTGGCCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCG
CCATCCTCGCCGGCGTCGTGGGCGCCGCCTCCAAGCTCGCCGGCGTGCACCACGTCCGCACCTGGCGCGGGGACAGCCTC
GCCACCAGCGCCTCCTCGGCCCTCGTCGCCTGGGCCATCACGGCGCTCGCCTTCGGCCTCGCGTGCAAGGAGATCCACGT
CGGCGGGCACCGCGGCTGGCGCCTCCGGGTGCTCGAGGCCTTCATCGTCATACTCGCCTTCACCCAGCTGCTCTACGTCA
TGGCGCTCCACGCCGGGCTCTTCGGCGGCCAGTTCGGTGGCGCAGGTGCGTACGGCGCGGAGCACCAGTACGGCGACCAC
CAC---CACAAGGGCATGGGCACCGCCGCCCCCGCAACCGCCAGGGTCTGACCGTCTTGAGGTTTAATTACTTATTTACT
TTGCTTAATTTCGTGATGGGCGCAGATGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATGTACGTAGCTAGCGTGTATGCATACATGGTGTTTGTGCATGTACTGCAGTTGTTTTTTCAAGG
ACTGTAG-----GTACACGTACTAGTTATGGTCCTGTTCAATTTCCATCTACGTAGTTTAATTTCCATCTACGTAATATC
------------TACTCCCTGTGCATGTGCTGCCG-TTGTCTTTGGAAAGACTGTACGTACATGTACTTCTGGTCCTGTT
TAATTTCCAGCTAGTATCTACTCCCTCCGTTTCAAATCATTTCAGTACAGATGTAGTTCATATTGAAATATCCAAAACAT
CTTATAATTTTTGAGTTTAAGAGAATGTACTAATTCCAAAATTTTCAAATGTAACAAATATTTTTTGAAAATTCACGAAC
ATTTTCTAAAATTGTGATATTTTTGAATTCACGAACATTTGAATCTGTGAGCATTTTTAAATTTTGTATACATTTTCCAA
ATTTATGATATGTTTCGAATCCTCCTAGA
>chr1B_89
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--------CCTTCCAGTCGGCCAATTGGCAGTACCGGTGGCGGTGACGGTAGTCTCCTTGGTCGCCTTCTTGTGAGCAGC
AGCCTTCTCGGCAGT--GAGTCTCTTGGCTTCGGTAGACACGGTGATGACGAAAACGACGCAGACGTAGACGATGTAGTG
GATGCAGAGGAACGGAGGCGAGAAGTCGTGTAGGAGACGATTCCCAAAAATCTAATCCCCCTCTCCCGTACATGTTCTAG
AGAGGTTGGGTTCCAGAGGGCTTCTCTCCCATCAACCATGTACGTCGTGGACGGGAGGGGATCACCGACGGCAACAACCG
CACGACAACAGCCGATGCGCGTTGGTAGAGCATATGCGATCTGTTCTTCTGGTAGCGGCTAGGGTTGCTTACACACCTCC
ACTACATAGGCGCTATCGGGTAGGAGGACATTGGCTGGACCCAAGTTCAAGTCAGTGACAGCCCACGATCTGATGTCTCG
AAGTTGTAGCGCGTATATTACGGACTCTACGTTTCTGACCAACAAAAATTAAGCCCATAGATGTGATCTCGTCTCTGCCC
ATTCCCACGTCCGGCCCCGCGTCATGGCGAGGCCGGCGGCGGAGGAGCGTGCGGGAACCATATCTCTTCTTAAGCTTCAA
TAGCATGTGAAAGAGAGTCCTTTATAAAAATGTC-AGTTCCTCCT-----------------------------------
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--------------------------------------------------TTACCAATAGGGTGAGACTAAATTTCAACT
TCTCACCACATTCCTTGTCATGACACCAACATGACCCCTTAAGGCCTTGTTCGGTTCCACAGGGTTTCAAGGGGTTTGGA
GTAGATTGGCAGGGATTAAATCCCCAGCAAGTCAAAATCCACATCAAACCCCTCCAATCCTTTTGTGATGGGATTAACCG
AACAAGGCCTAAAGATTTTTCTGAAACTGTTAGCCTATATTTTAGTAACATTTTGCCTGCGCAGCTGCGCTAGAACTGGT
TTACGCCTCATAAATCCCAGAATTAAGAAGCTCTGTTCTTTTTAGCAAAGTGGAGTGAACACCGAACTTGGGACTGAAGC
AACCGTGAGCTGATTCGATAGCGGACGC----CACGAACGCACGCACATGTAACCCATCCGTGACCGACCGTCAGCCCGC
CACGTACGGCCGGGAGCTGAGT-------ACGTACGAGAAGCGCTGGAACCATCCATCCGGTGTCTCCCGCCAACGGCTA
CTGGAAGCGGCCTGGTGTAAAG-CCCATGCGCGTCTCCGGCCACGCGTCCAACACCTGTAAGCCCCGAATCACACCTGTC
CCTCCCCTCACTCCCTATATATTTTATCCCACTACACCCCAGATCAAATCACCCATAG-------CTAAGCTTCCAACAC
CCAATTCTTCCATCCAGTAACATAC-------TACGTGCAGACAAGTCCGACTAAAC----CATCGAATCAATGGCGGGC
GTGAGCCGGAGCATGGTGGCGCCGCTGCTGGTGCTGAACCTGGTGATGTACATCGTCGTCATCGGCCTCGCCAGCTGGAA
CCTCAACCACTTCATCAACGGCACCACCAACTACGCCGGCGTGGCCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCG
CCATCCTCGCCGGCGTGGTCGGCGCCGCCTCCAAGCTGGCCGGCGTGCACCACGTCAGGACCTGGCGCGGGGACAGCCTC
TCCACCAGCGCCTCCTCGGCCCTCGTCGCCTGGGCCATCACGGCGCTCGCCTTCGGGCTCGCGTGCAAGGAGATCCACGT
CGGCGGGCACCGCGGCTGGCGGCTCCGGGTGCTCGAGGCCTTCATCATCATACTCGCCTTCACCCAGCTGCTCTACGTCA
TGGCGCTCCACGCCGGGCTCTTCGGCAACCAGTTCGGCGACGGGTACGG---CGGCGCGGAGCACCAGTATGGCGACCAC
CACCATCACAAGGGCATGGGCACCGCCGCC---GCCACAGCCAGGGTCTGACCGTCTTGAGCTTTAATTACT--------
CTGCTTAATTTCGTGATGGGCGCAGATGAACAAGATGTATGTACGTATCAATGTATGCGTGTGTGTGTGTGTGTGGTGTG
AGTGTGAT------------------------------------------------------------------------
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---------------------GTAGCTAGCATGTATGCATACATGGTGCTTGTGCATGTACTGCAGTTGTTTTTTCAAGG
ACTGTAGTGTAGGTACACGTACTAGTTCTGGTCCTG--------------------TTTAATTTCCATCTACGTAGTATC
------------TACTCCCTGTGCATGTGCTGCCG-TTGCCTTTGGAAAGACTGTACGTACATGTACTT-----------
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>chr1D_91
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----------TTACAGTAGGCCAATTGGCAATAGCGGCAGCGGCGACGGCAGCCTCCTCGGTCGCCTTCTTGTCAACAGC
AGCCTTCCCGACAGTGAGAGTCTCTCGGCTTCGGTGGACATGATGATGACGGAAG-------GACGCAGACGACGTTGTG
GATGCAGACGAACGGAGGCGAGCATTCGCGTAGGAGATAGTCCCCAAAAATCTAATTGCCTC------------------
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--------------------------------------------------------------------TCTCCCGTCTCG
GATTCATAGAGCGTCTG-------------------------------TTAAGCACACAGGTGTGAGCTTGTCTCGGCTC
ATTCCCGTGTCCACATCATTGT------GAAGCGGGTGGTAGAGGAACTTGCAGGAATCATTTCTCTTATCAAGCTCCAA
TAACATGTGAAAGCGAATCCTTTATAAGAAGCTCTAATTTCTCCTCTACAGTTTTCCTTCAGCGAGTGGCGGTCAGTTTG
GTTGCACTTGAGCCTCGCCAAACTGCTTTGGGCCTAGCGTGTTGGTGTCTGGCTCCGGCAATGTTCTTTGATGCTGCATT
TGTCTTGTCCCTATCACAAGTTCTAGTGCCTCTTTTTTCCGTTTTCTTTTTTTCCTTCTTATTGGGTTTTATTTCGGCTT
CCCTTGATTAGCTGAGAATGTTAGGTTTTCGGGTTCGATTTTTCTTATAAACTGGACCAACTCTCTTCTTCTTAATGAAA
TGCATGAACCCCTGCCCCTCTTGAGGTGTTTTCGAAAAAAAAAATTCTCTCTACTAGGAGGTTGAGA------TTAAACT
GCGCACCATATCCCTCGTCATGACACATACACGGGC--------------------------------------------
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------GCTTAGAGATTTTTCCCACCCTCTGTTTC-----------AACATTTTGCCTGC-------CGCTAGAAATTGT
TTACGCATCATAAACCCCCGAATTAA---GCTCTGTTTTTTTTAGCGAAGTGGAGTGAACACCGAACTTCGGACTGAAGC
AACCGTGAGCTGATTCGATAGCGCA-----GGCACGAACGCACGCACATGTAACCCATCCGTGACTGACCGTCAGCCCGC
CACGTACGGCCGGGAGCTGAGT-------ACGTACGAGAAGCGCTGGAACCATCGACCCGGTGTCTCTCGCCAACGGCTA
CTGGAAGCAGCTTGGTGTAAAG-CCCACGCGCGTCTCCCGCCACGCGTCCACCACCTGTGAGCCCCGAATCACACCTGTC
CCGCTCCTCACTCCCTATATATTTTATCCCACTACACTCCAGATCAAATCACCCACAG-------CTAAGCTTCCGCCAC
CCAACTCTTCCGTCCATCCAAAAGACGTACGGCACGTGCAAGTTCGATCGAAGAAGGAAAGCATCGAATCAATGGCGGGC
GTGAGCCGGAGCATGGTGGCGCCGCTGCTGGTGCTGAACCTGGTGATGTACGTCGTCGTCATCGGCCTCGCCAGCTGGAA
CCTCAACCACTTCATCAACGGCACCACCAACTACGCCGGCGTGGCCGGCAACGGCGCCACCTTCTACTTCCTCCTCTTCG
CCATCCTCGCCGGCGTGGTGGGAGCCGCCTCCAAGCTCGCCGGCGTGCACCACGTCAGGACCTGGCGCGGGGACAGCCTC
GCCACCAGCGCCTCCTCCGCGCTCGTGGCCTGGGCCATCACGGCGCTCGCCTTCGGGCTCGCGTGCAAGGAGATCCACGT
CGGCGGTCACCGCGGCTGGCGCCTCCGGGTGCTCGAGGCCTTCATCATCATACTCGCCTTCACCCAGCTGCTCTACGTCA
TGGCGCTCCACGCCGGGCTCTTCGGCAACCAGTTCGGCGACGGGTAC------GGCGCGGAGCACCAGTACGGCGACCAC
CA---TCACAAGGGCATGGGCACCGGCGCC---CCCGCCGCCAGGGTCTGACCGTCTTTGAGCTT--TTACT--------
TTGCTTAATTTCTTGATGGGCAA--ATGAACAAGATGTATGTATGTATCAATGTATGCGTGCGTG----TGTGTGTTGTG
TGAGTGAT------------------------------------------------------------------------
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---------------------GTAGCTAGCATGTATGCATACATAGTGTCTGTGCATGTGCTGCCGTTGTTTTTTCATGG
ACTGTA-----GGTACATGTACTAGTTCTGGTCCTG--------------------TTTAATTTCCATCTAGTATCTTTT
TTTTTGACACAGTACTTCCTGTGCATGTGCTGCCGTTTGTCTTTGGAAAGACTGTACGTACATGTACTTCTGGCCCTGTT
TAATTTCCATCTAGTATCTACTCCCTCCGTTTCAAATCATTTCAGTCCATATGTA-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------------------------------SS---------------------------S--------
-----------------------------------------S--S-----S----S-----SS-S------------S--
------------S--------------S-----------------------------S-S--------------------
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-------------S--------------------------------------S-S-------S-------S---------
-----------------S-------------------------------------------------------S------
---------S--S-------S-----------------------S-----------------------------------
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-----------------------------------------------------S---S---------------S------
--S--SS-------------------S----SS-----------------------------------------------
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----------------------------S---------------------------------------------------
-------S------------------------------------------------------------------------
-----SS---SS-SSSS-SS-S--SSSSSS-------S---------------SSSSS-S--------------------
----------------------SSSSSSS--------------------------------S------------------
-S--------------------S-----------------------------------------S--S------------
-----S---S------------------------------------------------SSSSSSS---------------
-----------------------------SS-----------------S----------------S-S------------
-----------------------------------------------------------------S--------------
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----------------S---------------------------------------S-S---------------------
--------------------------------------------------------S-----------------------
----------------------------------------------S---------------------------------
--------------------------SS---------S-S--SSSSS-SSSS----------------------------
------------------------------SSS--S------------------------------------SSSSSSSS
--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------S-------------------------------------------------
---------------------------S--------SSSSSSSSSSSSSSSSSSSS-------------------S----
-------------------------------------------------------------------------S------
---------S------------------------------------S--S-----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_20
GCTCGGCAAATCGCTATGTG------------------------------------------------------------
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>reverse_2207
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----------------------------------------------GTCATACTCGCCTTCACCCA--------------
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>forward_1495
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-----------------------------------GAGCGCACGCACATGTAAAT-------------------------
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>reverse_2900
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-------------------ACGTAGCTAGCGTGTATGCA-----------------------------------------
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