>input_sequence_76914
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----------------------------ATGGCTGTTGCTGTGCCGTCGACGCTGCCGATGAAGCTTAGGAAGGTTGAGC
TCCGCGGCAAGGCGGCGGCGACGGGGGTTGCCGGCCGCGCGCGCGTGCTGGTGACGGTTACCGTCCTCGGAAGCGCTGGC
CCTCTACGGTTCTTGGTCGACGAGGGCGAGTCGGTCTACGGACTAATCCGTGCTGCGCTCCGCTGCTATGCCCGCGAGGG
CCGCATGCCGCTGCTCGGCTCCGACGCTGCCAACTTCCTCCTCTACACAGCCAACGGCAGATCCGACGGTAAACATTGTT
TCGTC---ATAAATAGATAATTTACTCTATTTCTTGGCTAGCGCGTCCCTGAATTCCATCTTCGTTCATTGCAGCTCTCA
AGGCCGACGAGAGGATCAGCTTCAATGGATGCAGGAGCTTCATGCTGTGGCAGAAGACTGTCGCCGACAACAATGGGTCT
GAGCC------------------TAATTCTAGCCCAGGCAGAAAGGGGATCAGCGGCTGGAAATTTGGCCTAAACAAGAT
CCTTCTCAACTTCAGCTTCAAGGTGTGA----------------------------------------------------
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>chr4A_1_TraesCS4A01G166700
TCATTGCCGAGACTCG-TTAACGAATGTGTGAAGAGAAGTCAGATTGCGTGAGGAGG-------TGGGGGTTGTTGCATT
CTTAAGGCAGAGGGAGCAAGAGGAGCAGGTCGCGAGGTGTGTAGGGGCGATGCAATGTGCTTGCTCTTTT--TCTTTTTT
TGCCTGACGACACA-CGGGGAGGCAAAGACTAGGCGAAATACTAGGACA---------------CGAGGGACTAGGCTTT
CTTTTCCTAGCATCAGGTGGCATGATTTTTTTCTTCCTTTTAGAGTGTGCACCGTGAAGCGCTAGCCAACAAACGTTCAT
TGGCTAGACGTGTCTTTATTTTATTGATTGATAATTG---CACATCCAATTAAATGCGCCGGTATCCAGAAAGGAAAACC
TTGCGTGTTGGGGCAGCTTGGGAGCCAAG-GATCGTCCCAACCGCGTGGACGCCCTAAAACGGCATCCACCCGTCCATCC
ACCGCCACCAACCGCCCAGATCGACGCGCTCTCT------TCTGGAAACAAGGAAGACCAGCGCAACCCT------CCAC
GCGGCCGCCGCCTC---AGCCTCAGCGGAGCCGTGCCTTATATTCCGTCCCCTCACGATTCGATCCGTTCTCACAAACGA
AACAGACCCCGTCTCCTCCTCCTCCTTCCC-------CTCGCCGCCGGGAGCCCAGATCTCTTTCTCCGCCGCGCCGCCA
AGACGAGTTCCGCCCCCTCGTGAATGGTGGGAACCCACACGATCGCCGCCTCCCCCTCCTCGCCGCCGCAGACGGAGAGG
GACTCCTCCGCCTCCTTCCGCTGCTTCGGCGCTTGCATGCAGGGCTGGTACCACCGCTGCATCGGCCTCGACCCCTGAGC
GGCCCTCCCTCCGTCAGCGACCA----------ACCTTCTTTTGATTCCCCCCTGAACCATCCCTGGTTATTTTGATCTT
GAGTTTTTCCTTGCGGAGAAGAGAATTCATCAGAAAAGAAAAGAGAGGAA------CAAGCGATTTTGATTGATAGGTTT
CGTTTGATTTGATTGATTGACCGTCGCTATGGCTGTTGCTGTGCCGTCGACGCTGCCGATGAAGCTTAGGAAGGTTGAGC
TCCGCGGCAAGGCGGCGGCGACGGGGGTTGCCGGCCGCGCGCGCGTGCTGGTGACGGTTACCGTCCTCGGAAGCGCTGGC
CCTCTACGGTTCTTGGTCGACGAGGGCGAGTCGGTCTACGGACTAATCCGTGCTGCGCTCCGCTGCTATGCCCGCGAGGG
CCGCATGCCGCTGCTCGGCTCCGACGCTGCCAACTTCCTCCTCTACACAGCCAACGGCAGATCCGACGGTAAACATTGTT
TCGTC---ATAAATAGATAATTTACTCTATTTCTTGGCTAGCGCGTCCCTGAATTCCATCTTCGTTCATTGCAGCTCTCA
AGGCCGACGAGAGGATCAGCTTCAATGGATGCAGGAGCTTCATGCTGTGGCAGAAGACTGTCGCCGACAACAATGGGTCT
GAGCC------------------TAATTCTAGCCCAGGCAGAAAGGGGATCAGCGGCTGGAAATTTGGCCTAAACAAGAT
CCTTCTCAACTTCAGCTTCAAGGTGTGAGCCATCGATGAGTTCGAAACGAATAAGTGCGCTCGATTCAGCGAATCATTGC
TGTAATCGGCCGTCAATTTTACTGCATTGGGAAGTCTGTTGCTTCGGTTTTTTTTTGTTTGGTTCAGTTGCTGTTTCATC
GTCCTCTACATGTAATGAGATTATAGTTCGAAGCATACATTCAGAATTGTCCAGTGTGAAACTTATATGCATTGAAGTTA
CCTTTACTCTGGTTCGATGCTTATGCTGTGTTTGTGTGCATCGAATATAAAAATTGCGTAGCGAACAAAGAAACCTGCTC
AGGGTAATCTCAAAACTACCCGAAGG---------------------------AAACCAAGTGGTTATTTGCAATTTTTT
--GTGATGATTCAGTGCTAATAATATGCTGCCATTTGTGTTT----------GATACATCTAATATGCTGCCATTTGTGA
CAATTCAGTACTTATTACATGCTGCCATCTGTGTAATGAATCAATC----------------------------------
-------------TAGTTCTCAAATAATTCCTTCGGGTAGAATGCCACGCATCACTTGTACTCTTCTAC-----------
--------------------------------------------------------------------------------
--TTCTCAAATCA-----TCAATAAGCAATGACATG----------GACACCTCAATGTTTGGCATACATATTAGGGTTT
CTTTGGTTGTTCGATTCATAGGATTGAATTGTCAGGAATTTTTTCTAACGATTTTT------------------------
--------------TTACTATATCCTGCATCCAATCAAACCTCTTTGAAAGAATCATTTGTTTTTGCTATGATGCG----
--------------------------------------------------------------------------------
--------------------ATCATGTGTTGTGCGTTAAGGTCGTGGCTTCAA---------------------------
-------------------AAAACCACAAATTCAGATAGTGACATGGATCGCCAGAAGTTGACGCAACCCGGAGTTGTGC
TGGTTCTGATTGGGACGTAAAAGGAGAACATGTGCCGTTCATCTTGGCGGCAGGCAGGCCGGCCATACAAATGGCTGATG
ACAACGTGTAGCTGTTGCTGTTTTGCTATCAGCTGGATAATGGCCCCTTTTGAAC-------------------------
--TGTGGCTGTCATCTGTAATAGCGGGCGAATGCATATAAACGGGTTAACACCTTGTTTATGGCATGCCAAAGCGTG
>chr5D_1
TCACTGCCGAGACTCCATTAACAAGTGTGTGAAAAGAAGTCGGATTGGGTGAGGAGGAGGGATGTGGGGGTTGTTGCGTT
CTTAAGGCTGAGGGAGTGAGAGGAGCGGGACGCGCGGTGTGCAGGGACGAGGCAATGTGCTTGCTATTTTTCTCTTCTTT
GGCCTGACGACAACGCGGGGAGGCGAAGACTAGGCGAATGTGCTCATGCCAGACATAGGGGGCGCGAGGGACTAGAGCTT
CTTTTTTGAGTATCAGCTGGTATA--TTTTTTTTCCCTTTTAGCGTGTACAACGTGAAGCGCTAGCCAACAAACCTTCGT
TAGTTAGGCGTGTCTTTATTTTAAAGATAGAGATA-TAATTACACCAAATTAAATGCGCCGGTACCCA-----GAAAACC
TTGCGTGTTGGGGCAGCTTGGGAGCCAAGAGATCGTCCCAACCGCGTGGACGCCCTAAAACGGCATCCACCCGTCCATCC
ACCGCCACCAACCGCCCAGATCGACGCGCTCTC-------TCTGGAAGCAAGGAAGACCAGCGCAACCCT------CCAC
GCGGCCGCCGCCTCATCAGCCTCAGCGGAGCCGTGCCTTATATTCCGTCCCCTCACGATTCGATCCGT--TCACAAACGA
AACAGACCCCGTCTCCTCCTCCT---TCCC-------CTCGCCGCCGGGAGCCCAGATCTCTTTCTCCGCCGCGCAGCCA
AGACGAGTTCCGCCCCCTCGTGAATGGTGGGAACCCACACGATCTCCGCCTCCCCCTCCTCGCCGCCGCAGACGGAGAGG
GACTCCTCCGCCTCCTTCCGCTGCTTCGGCGCTTGCATGCAGGGCTGGTACCACCGCTGCATCGGCCTCGACCCCTGAGC
GGCCCTCCCTCCGTCAGCGACCCGGCGAATCCGACGCTCTTTTGATTCCCCCCTGAACCGTCCCTGGTTATTTTGATCTC
GAGTTTTTCCCTGCCAAGAAGAGAATTCATCAGAAAAGAAA--AGAGGAA------CAAGCGATTTTGATTGATAGGTTT
CGTTTGATTTGATTGATTGACCGTCGCTATGGCTGTTGCTGTGCCGTCGACGCTGCCGATGAAGCTTAGGAAGGTTGAGC
TCCGTGGCAAGGCAGCGGCGACAGGGGTTGCCGGCCGCGCGCGCGTGCTGGTGACGGTTACCGTCCTCGGGAGCGCCGGC
CCGCTACGGTTCTTGGTCGACGAGGGCGAGTCGGTCGACGGACTAATCCGTGCTGCGCTCCGCTGCTATGCCCGCGAGGG
CCGCATGCCGCTGCTCGGCTCCGACGCTGCCAACTTCCTCCTCTACACGGCCAATGGCAGATCCGACGGTAAGCGTGGTT
TCATCATTATAGATAGATAATTTACTCTAGTTCTTGGCTAGCACGTCCCTGAATTCCATCTTCGTTCATTGCAGCTCTCA
AGTCCGATGAGAGGATCAGCTTCAATGGATGCAGGAGCTTCATGCTCTGGCAGAAGACCGTCGCCGACAACCATGGGTCT
GAGCCGGCGGTGGCTACCACGGTTAATTCCTGCCCAGGCAGGAAGGGGATCAGCGGCTGGAAATTTGGCCTGAACAAGAT
CCTTCTCAACTTCAGCTTCAAGGTGTGAGCCATCAATGAGTTTGAATCGAATAAGTGCGCTCGATTCAGCGAATCATTGC
TGTAATCGGCTGTCAATTTTACTGCATCGGGGTGTCTGTTGCTTCGTTTC---TTTGTTTGGTTCAGTTGCTGTTTCATC
ATCCTCTACATCTAATGAGATTATAGTTCAAATCATACATTCAGAATTATCCAATGTGGAACTTATATGCATTGAGGTTA
CATTTACTCTGGTTCGATGCTTATGTTGTGTTTGTGTGCATCGAATATAAAAATTGCGTATCGAACAAAGAAATCTGCTC
ATGGTAATCTCAAAACTACCCG------------------------------------AAGTTGTTATTTGCAATTTTTT
TTGTGATTATCCAGTGCTAATAATATGCTGCCATTTGTGTTTGATACATCTAGATACATCTAATATGCTGCCATTTGTGA
CAATTCAGTACTTATTGCATGCTGCCATCTGTGTTCTGAATCATTTACTCCTCATCCCATAAAAAAACGTCTTGCATTGT
GGGACGGAGGGAGTAGTTCTCAAATCATTCCTTC-GGTAGAATGCCACGCATCACTTGATTACTCCCATCTACTCCCTCT
CATCCAAAATAGATGATTCGACTTTGTATTAACTTTAAGTTAGTACAAAGTCGAGTCATCTATTTTGGAACGGAGGGAGT
AGTTGTCAAATCATCAATTCAATAAGCAATGACATGTGAATTTCCAGACACATCAATGTTTGGCATACATATTAGGGTTC
CTTTGAAATTTTGGCATACATATTAGGGTTCCTTTGAAATTTTGGCATACATATTAGGGTTCCTTTGAAATTTTTATATT
GTCCTATATTGGCCTTACTATACCCTGCATCCAATCAAACCTCTTTGAAAGAAG----------------CCTTTGTTTT
TAGGATCTTGTGAATCAAAGAGGCCCTTACCCAACATTGAGAAAACAATCATGTGTTTTGCGTCAAGGTCGTGGCTTCAG
ACAACCACAAATAAAGAACAATCATGTGTTGTGCGTTAAGGTCGTGGCTTCAGAAAACCACAAATAAAAAACAATTGTGC
GTTAAGGTCGTGGCTTGAGAAAACCACAAATTCAGACAGTGACATGGATCGCCAGAAGTTGACGCAAGCCGGAGTTGTAC
TGGTTCTGATTGGGACGTAAAAGGAGAACATGTGCAGCTCATCTTGGC-------AGGCAGACCATACAAATGGCTGACA
ACAACGTGTAGCTGTTGCTGTTGTGGTGTCAGCTGGATAATGGCCCCTTCTGAAC-------------------------
--TGTAGCTGTCATATGTAATAGGCGGCGAATGCATACAAACGGGTT-ACACCTTGTTTATGGCATGCCAAACGTG-
>chr5A_266
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---------------------------------------------------CCGTGAAGCGCTAGCCAACAAACCTTCGT
TAGTTAGGCGTGTCTTTATTTTATAGATAGATATAATAATCACATCTAATTAAATGCGCCGGTATCGA-----GAAAACC
TTGCGTGTAGGGGCAGCTTGGGAGCCAAG-GATCGTCCCAACCGCGTGGACGCCCTAGAACGGCATCCACCCGTCCATCC
ACCGCCACCAACCGCCCAGATCGACGCGCTCTCTCTGGAGTCTGGAAGCAAGGAAGACCAGCGCAACCCCGTCTCACCAC
GCGGCCGCCGCCTC---AGCCTCAGCGGAGCCGTGCCTTATATTCCGTCCCCTCACGCTTCGTTCCCT--TCACAAACGA
AACAGACCCCGTCTCCTCCTCCTCCTCCCCCTCCTCTCTCGCCGCCGGGAGCCCAGATCTCCTTCCCCGCCGCGCCGCGA
CGACGAGTTCCGCCCCCTCGTGAATGGTGGGAACCCACACGATCTCCGCCTCCCCCTCCTCGCCGCCGCAGACGGAGAGG
GACTCCTCCGCCTCCTTCCGCTGCTTCGGCGCTTGCATGCAGGGCTGGTACCACCGCTGCATCGGCCTCGACCCCTGAGC
GGCCCTCCCTCCGTCAGCGACCCGGCGCGCCGGACCTTCTTTCGATTCCCCCCTCAACCGTCCCTGGTTATTTCGATCTC
GAGTTTTTCCCTGCCAAGAAGAGAATTCATCAGAAAAGAAA--AGAGAGGAACACGCAAGCGATTTTTATTGATAGGTTT
CGTTTGATTTCATTGATTGACCGTCGCTATGGCTGTTGCTGTGCCGTCGACGCTGCCGATGAAGCTTAGGAAGGTTGAGC
CCCGTGGCAAGGCGGCGGCGGCGGGGGTTGCCGGCCGGGCGCGCGTGCTGGTGACGGTCACCGTCCTCGGCAGCGCCGGC
CCGCTACGGTTCCTGGTCGACGAGGGCGAGTCCGTCAACGGACTAATCCGCGCCGCCCTCCGCTGCTATGCCCGCGAGGG
CCGCATGCCGCTGCTCGGCTCCGACGCTGCCAACTTCCTCCTCTACACCGCCAATGGCAGATCCGACGGTAAGCATGGTT
CCATCATTACAGATGGATAATTTACTCTAGTTCTTGGCTAGCACGTCCCTGAATTCCATGTTCGTTCATTGCAGCCCTCA
AGGCCGATGAGAGGATCAGCTTCAATGGATGCAGGAGCTTCATGCTCTGGCAGAAGACCGTCGCCGACAACAATGGGTCT
GAGCCGGTGGTGGCTACGACGGTTAATTCTTCCCCAGGCAGAAAGGGGATCAGCGGCTGGAAATTTGGCCTAAACAAGAT
CCTTCTCAACTTCAGCTTCAAGGTGTGAGCCATCGATGAGTTCAAATACAATAAGTGCGCTTGATTCAGCGAATCATTGC
TGTAATCGGCTGTCAATTTTACTGCATTGGGAAGTCTGTTGCTTCGTTTTTTTTTTTTTTGGTTCAGTTGCTGTTTCATC
GTCCTCTACATGTAATGAGATTATAGTTCGAATCATACATTCAGAATTGTCCAATGTGAAACTTATATGCATTGAAGTTA
CATTTACTCTGGTTTGATGCTTATGCTGTGTTTGTGTGCATCGAATATAAGAATTGCGTATC------------------
---------------CTACCCGAAGGAATGAGTTGTTTTGGCTGCACTTCTATAAACCAAGTGGTTATTTGCAAAAAAA-
TTGTGATGATCCAGTGCTAATAATATGCTGCCATTTGTGTTT----------GATACATCTAATATGCTGCCATCTGTGA
GAACTCAGTACTTATTACATGCTGCCATC--------------ATC----------------------------------
-------------TAGTTCTCGAATCATTCCTTTGGGTAGAATGCCACGCATCACTTACTCATC----------------
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AGTTCTCAAATCA-----ACAACAAGCAATGACATGTGAATTTCCACACACCTCAATGTTTGGCATACATATTAGGGTTC
CTTTGGAATTTTTCCATGTAGATTGATATGAGCATGACATTCC-------------------------------------
---------------------------------------------------AATCGTATGTTTTTTTATTCCTCTGTTTT
TAGAATCCTGTTGAAG----------------AACATTTAAAAAAGAAACTGTGA-------------------------
-------------------AATCATGTGTTGTGCGTTAA-----------------------------------------
----AGGCCGTGGCTTCAGAAAACCACGAATTCTGATAGTGACATGGATCGCCAGAAGTTGACGCAAGCCGGAGTTGTAC
-----------------------------------------------C-------AGGCAGACCATACAAATGGATGACA
ACAACGTGTAGCTGTTGCTGTTGTGGTGTCAGCTGGATAATGGCCCCTTCATAAATGTGGCTTTTTTATTTTAGATCATA
AATGTGGCTGTCATCTGTAATAGCCGGCGAATGCATATAAACGGCTTAACACCTTGTTTATGGCATGCCAAAGCGTG
>SNPs
---S-----------S------S-S--------S-------S-----S-----------------------------S--
--------S-------SS--------S--S----S------S----S---S--------------S----------S---
S-----------SS----------S-------------SSSSSSSSSSS--------------------------SSS--
-----SSS--S-----S---S--SSS------S-S--------S----S-------------------------S---S-
-S-S---S----------------S---S----SSSS---------S---------------------SSSSS-------
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-----------------------------------------------S--------------------------------
--------------------------------------------------------------------SS----------
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--------------------------------------------S-----------------------------------
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----------------------S------------------------------------S-------------------S
----------S---SS-------------------------SS-------------------------------------
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----S-----------------------------------------------------------------S-----S---
--S---------------------------------S-------------------------------------------
------------------------------------------------S-----S-----------------S---S---
--S--------S-----------------S------------S-------------------------------------
-------S--------------------------------------S-----------S---------------------
------------------------------S-------------------------------------------------
----------------------------------------------S---------------------------------
----------S-----------------------------------S---------------------------------
--------------------------------S--------------------S--------------------------
-S----------------------------------------------------------S------------S------
-S------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
----------------------------------SS--------------------------------------------
-------------------------S--------------------------------SS-S--S-S-S-----------
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-------------------------------------------------------------------------------S
------SSS--S-SSSS----SS-S-S---SS--S---S----SSS-SSS--S--S------------------------
----------------------S--------------------------------S-S-------SSSS-SS-SS-----
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----------------------------------------------------S---------------------------
-------------------------------------------------------------------S----------S-
-----------------------------------S-S----------SSSSSSS----S-S----------------SS
----------------------S--S-S---------------------S------------------------------
------------------------S----------------------------------------------------
>forward_629
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-------------------------------------------------CCCTCACGATTCGATCCGTT-----------
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>reverse_2552
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-----------------------------------------------------------------------ATGCGATCA
TGTGTTGTGCG---------------------------------------------------------------------
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