>input_sequence_76896
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-----------ATGGCCCGTTGCATTTGGATGAAAGGCTCCAGCTATGGTTACGACTTGACAAATCTGCAACATCTGCAC
CTTCATTCATGCCCAAGCCTCGAGTACGCGCTTCCAGTATGCACAGTCGACAACTCTTTCCCCAGCTTGAAGACCCTCTA
CATCATCCGCTGCGGCGACCTCATGCACGTATTTATGCAAAGCAACCAGGAGGATCCTCCA---AGCAGCGTCAAGTTCC
CAAAGCTGACCACGATCCACCTGTACGACCTGCCGTCGCTGCAGCAGATATGCGAGGACGCCGAGACACTGGCGCCCGCA
CTGGAGAACACCAGGATCAGGGGATGCTGGAGCTTGCGTCGGCTGCCAGCCTTGAAGGGCCGCGAGCCGGACACGAGGAG
GCCCACAGTGGAGATAGAGAAGGACGTGTGGGACGCTCTGGAGTGGGGCGGGGTGGAATCGGGGCACCACCCTTCCCTCT
ACGAGGCGCCCGTGCAGTCGCGGTACTACAAGAGGTCCATGCCCAGGGGCACAGTTCTCAGGTATACTTTC--TAA----
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>chr6D_1_TraesCS6D01G066600
GGCCAGTTAAGCGATGTGTTGTGTACACACTACTCAGATCATGCTTACTCTGTTCTACAGGAAAAACGAAGCAAAGGAAA
GGATAGCTCTATGGATTAGTGTTCCCCTAGTTCTGTAAAGCTTCATTCACTGCTGGGGGCCCGTCAGTTTGACAAGCTCA
CAGATTAGTGCAGTGTTTCGTGAAGAGACTGATAGCATAGTTGCTCGCCACCCATCTATGTGGGACATCGATCCAACACT
GGTTACAGTTTGTTGTCTCTACAGATTGCTAATGCAACACATTTCTCAGAGTAATACTATATTTGCTTGGACTTCAGCTC
ATGCTCCCAACTATTGGATGTACGATGGCATCATTCAAGGGAGTCGAGCAAGGGAGATTACTAATGCATTGCATAAAGAA
ATAAGTTTTTCTGAG---TGTGATGCCGATGATCTCAAGATGGTGTGTGGCAATTTAATGAAAGATTCAAAGATTCCTTT
TTGTGGTGGTTACAGATGACAATATGCCTTTCAGAAAAGGGTCTCCCCGTTGGGTTTCTATCACCTTGAAGCACAAGAAA
CTACATGAGGATACAAAAACTCTGCTGACAAGGGCATCATCAATCTTCGTACAATTTCAAGGAACTAATAGCTCATCTGG
ATTACCAAATGTCTTGTTTCAAGGGTGCAGCAACCTTGCTGTGCTTACTCTGTCTTGTTGTGCCTTCAGTTTTGCATGGC
CTCCTTTCCACCACTGCAATAAATTAAAATTCCTTGGATTAGACCACTGCACAGATCTTGACAAGGCCAAACTTGAAGAA
CAGAGCTGCAGCACCAAGTGGGCATGTCTGCATAGCCTGTATGTGCTTGATCTGCGTTACACATGTTGGGATGAGATTTT
ATCGGGGGAGAATGTGGATGTTATGGCCAACGTCATGGAGCTAAACATAGAGGGAGTCAAGGGTTGGCAGTACACAAATC
TATTACAAAAAAGGCTGCCTTACCTCGAGTACGTTGCATTTG--------------------------------------
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----------GATGGCCCGTTGCATTTGGATGAAAGGCTCCAGCTATGGTTACGACTTGACAAATCTGCAACATCTGCAC
CTTCATTCATGCCCAAGCCTCGAGTACGCGCTTCCAGTATGCACAGTCGACAACTCTTTCCCCAGCTTGAAGACCCTCTA
CATCATCCGCTGCGGCGACCTCATGCACGTATTTATGCAAAGCAACCAGGAGGATCCTCCA---AGCAGCGTCAAGTTCC
CAAAGCTGACCACGATCCACCTGTACGACCTGCCGTCGCTGCAGCAGATATGCGAGGACGCCGAGACACTGGCGCCCGCA
CTGGAGAACACCAGGATCAGGGGATGCTGGAGCTTGCGTCGGCTGCCAGCCTTGAAGGGCCGCGAGCCGGACACGAGGAG
GCCCACAGTGGAGATAGAGAAGGACGTGTGGGACGCTCTGGAGTGGGGCGGGGTGGAATCGGGGCACCACCCTTCCCTCT
ACGAGGCGCCCGTGCAGTCGCGGTACTACAAGAGGTCCATGCCCAGGGGCACAGTTCTCAGGTATACTTTC--TAAGTAG
ACACGCTAAAGGACTAGGCTGTAGCCTAGTGGCAAGGGACGCGGTGGCAAATTTGTGGTGACTCACCCGGTTGGGCCTAT
AAAAATATGTCCATGGTTGCTAGTGCCCATGGATCTTTTTTTTTTATTAGGCACGCTATCATTACTACAGTGTATATCAT
CATGTAGGCATAGTCACTGCATGTAATGTTGTATTATAAACATTGTAGCTAGCTAATTGGTTTGCTTCGCAATCTGCCCA
GGTGAAAATCGTTCTAAACTATGCATCTGCTGCTGCCGTTGGTTATGTCATCAGATTCGGTGGCGTGTTCCCCTCCAAAA
TGAAAACAAGATTCAGTGTGTTGGTGTGACGCGATGGATGCTTGCCGACAATGCTAGCAGGTGTTGGTTGATCAGTTGGT
GTGTGTAGCAAGCGAAGGAATGGAGCTGCTTCAGGCTTGGTTGCTGCCGTGACGGCCGGCCGACTTGGCCTGCATCCGTT
TGCTGTGTGTTTTACCTTTGAAATAAGAAAGGCAACCGGCCGACTTGGCTTGGTTGCTTCCTGCGTGCAAACCTGCCCGT
GGTCGAGGTGCGACCACCGACAGTGTATCTGTGTGTGTTTGGTTTCTGTGGCTTCAGTTCCACAGGTGTTTGTCCGTTGG
TCTGTCTCCCGGCCCGTTTGAGAGCATGGTTAATAGTATAGCCAATTGCTGGCTATAAGCCATTGCCATGTCATCTATAG
CCCATTTTATAGCTAATATGTATAATAGTTGATCAAAAGAGTGTACTATTTTTTATTATATGACCCACATTTCACTCCAC
AAAATGTATAGAAGCACGTGCTAGAGCTGGCTCTTCACCAAGAGCCTGCTTATCTTCTCTCTCCTTTTTTCTTTCCTCCA
ACTAAGCAAGAATATATATACTAGTTTATTTTTTATAACCAGCTGACTCAGCTCTATTGTACTTGCTCTGAGACGGAGCA
GAGTAGCAACTGAAACTGTAATAATCAGCGTGGCTG
>chr6A_137
GGGCCA--------------------------------------------------------------------------
---------------------------------------------------------------TCAATTTGACAAGTTCA
CAGATTTATGCAGTGTTTCGTGAAGAGACTGATAGCATAGTTGCATGCTACCCATGTATGTGGGACATCGACCCAACAGT
GGTTACAGTTTGTTGTCTCTACAGATTACTAATGCAGCACATTTTCCAGAGCAAGACTATATTTGCTTGGACTTCAGCTC
ATGCTCCCAAGTATTGGATGTGTGATGGCATCATTCAAGGGAGTAGAGCAAAGGAGATAAGTAATGTGTTGCAGAAAGAA
ATAAGTTTTTCTGAG---TGTGATGCCTATAGACACAAGGTGGTGTGTGACAAATTCAAGGAAGATCCGAAGAATCCTTT
-AGTGGTGGTTACAGATGACAATATGCCTTTCAGAAAGGGGTCTCCCCGTTGGGTTTCCATCACCTTGAAATACAAGAAA
CTACAGGAGGATACAAAAACTCTACTGGCAAGGGCATCATCCATCTTCATACAATTTCAAGAAACTAATAGCTCGTCTGG
ATTACCAAATGGCTTGTTTCAAGGTTGCAACAACCTTGCAGTGCTTACTCTGTCTTATTGTTCCTTCAGTTTTGCATCAC
CTCCTTTCCTCCACTGTGAAAAATTAAGATTCCTTGGATTAGACCACTGCACAGATCTCAATAAGACTAAGCTTGAAGAA
CAGAACTGCATCACCAATTGGACATGTCTGCATAGCCTGTGTGTGCTTGACCTACACTACACATGTTGGGAAGAGATTTT
ATCGGAGGAAAAGGTGGATCTTATGGCCAACATATTGGAGCTAAACATAGAGGGAGTCAGGGGTTGGCAGTACACGAACA
AATTACAGAAAAGGCTGCCTTACCTTCAAAGGCTCCGAATTATCAAACCTCCATGTCAAGCCAACAAGACATCAATGGAC
ATCAACGAGTCATTTAGAGACAAGACAAAGCTAGAAATACTTGATTTTTCTGGTAACAGTGACATGGAAAACCTACCAAC
AAGCCTGTCAATGGCAAGAAAACTTGAGGCGCTTGTTCTTGATGGTTGTTGTGGGCTAGAAAATGTTGTGCTGGCTAACT
CCTCTCTGAGGTCATTCAGTTTTGATGCTTATGGAGCAGCATCCCAATGGACATCAGCCACTGAGCTACTAGCTCCAGAA
AGTTCTCGCCCAAAGTGTTCATCTGCTAATGTAGATAAGAAGGATGTCAAAACCTCCAAGATATCCCTGGAAGGGTGCGC
ACAGTTGGAAAATTTGTTTTTGCGTGAGCTACCCAATCTAGTGGAGCTAGACCTTTCAGGATGTGTAATCAAGGTATTTG
ACTTCAAAACTATGGTGGTGGATGTTCCAAATCTCAAAAGACTCTTTCTATTGGGTTGTGAGCACCTTTGTTCAATAAGG
TGGGGCTCATTTGCAGATGTGCAAGCACAGAAGCTGGAGTTGCTCTGTATAGACACACGGCCATGTCTTGGGAAGGTACT
TCGGCCATCAATTGTGCAGCATAAATTCCGGTTGCAAGTCCATGCTATTATTGCGGATGCTAGGTTTGCTCGGTCATTGG
CATCTCTGATACTTGGTACACTGCCAATGGCCGGTGCTTACTGTTTTAATATCAGCATCACCTCTCCAAGTGTCTCTGCG
GGGGTTGCTCAACCTGAAGAACCCAACAGTGGAAATATTGTTGTAGCGGCAGCGGCACCCTATGGTGATATCTGCAATGA
GGTTGGCCCGGTGTGGGACTTCCCACAGCCTCCAACATCACAGTTGGACCGTCATATTGAGATTGGTGATGGGAGCTGTG
GTGTGGAGAGTGAATTGCAATTGCATAGATATTATTCGTTACCTTCTGTGATGAGAGAGTTTGCCCAGTCCTTGCATGTG
CATGATTCTTCTATTAGAGGCCATGCCATGCCTGCAGGTTCTATGGAGCGCCTTAGGTGGTGCCGAGTGGAGAGGTGCCC
CAACTTGGACACTGTCTTTCCTCGTGGTGGATATGCCTATGAAATGGTAGGTTGCCCTTATCTGGAGATCATCTGGGCAT
CACATCTCTTGATGGGCCGTTGCATTTGGATGAAAGGCTCCAGCTATGGTTACGACTTCACAAGTCTGCAACATCTGCAC
CTTCATTCATGCCCAAGCCTGGAGTACGCGCTTCCAGTATGCAAGGGTAGCTCC---TTCCCCAGCTTGAAGACCCTCTA
CATCATCCGCTGCGGCGGCCTCGTGCACGTATTTGTGCAAACCAGCAAGGAGCATCCTCCTAGCAGCAGCGTCGAGTTCC
CGAAGCTGACCACGATCCACCTGCACGACCTGCCGTCGCTGCAGCAGGTATGCGAGGCCGCCGAGACACAGGCGCCCGCA
CTGGAGAGCACAAGGATCAGGGGATGCTGGAGCTTGTGCCGGCTGCCGGCCTTGATGGGCCGCGAGCCAGGCATGAGGAG
GCCGGCGGTGGAGATAGAGAAGGACGTGTGGGACGCTCTGGAGTGGGGCGGCGTGGACTCGGGGCACCACCCTTCCCTCT
ACGAGGCGCCCGTGCAGTCGCGGCACTACAAGAGGCCCATGCCCAGGGGCACCGTTCTCAGGTATACACCTCGTAAGTAG
ACACG---------------------------------------------------------------------------
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>chr6B_148
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-------------------------------------------------------------------TTTGCGAAGCTCA
CAGATTAGTGCATTGTTTCGTGAAGAGACTGATAGCATAGTTGCTCGCCACCCATGTATGTCGGACATCGATCCAACACT
GGTTACAGTTTGTTGTCTTTACAGATTGCTAATGCAGTACATTTTTCAGAGCAATACTCTATTTGCTTGGACTTCAGCTC
ATGCTCCCAACTATTGGATGTGCGATGGCATCATTCAAGGGAGTCGAGCAAGGGAGATTAGTAATGCATTGCATAAAGAA
ATAAGTTTTTCTGAGCGGTGTGAAGCCGAAGAGTTCGAGATGGTGTGTGGCAATTTAATGGAAGATCCAAGTACTCCTTT
-TGTGTTGGTTACAGATGGCAATATGCCGTTGAGAAATGGGTCTCCCCGTTGGGTTTCTATCACCTTGAAGTACAAGAAA
CTACAGGAGGATACAAAAACTCTGTTGGCAAGGGCATCATCAGTCTTCATACAACTCAAAGGAAATTATTGGTCATCTGG
ATTACCAAATGGCTTGTTTCAAGGGTGCAACAATCTTGCAGTGCTTACTCTATCTTGTTGTGCCTTCAGTTTTGCATGGC
CACCTTTCCTCCACTGCAATAAATTAAGATTCCTTGGATTAGACCACTGCACAAATCTTGACAAGGCCAAACTTGAAGAA
CTGAGTAGCAGCACCAAGTGGACATGTCTGCATAGCTTGTATGTGCTTGATCTGCGTTACACTTGTTGGGAAGAGATTTT
ATCCGAGGAAAATGTGGATCTTATGGCGAACATCATGGAGCTAAACATAGAGGGAGTTAGGGATTGGCAGTACATAAACA
AATTACAGAAAAGGTTGCCTTGCCT-------------------------------------------------------
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>SNPs
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------
-------------------------------------------------------S------------------------
------------------------------------S-------S------S----------------------------
---------------------S--------------------------------------S-------------------
--------------------------------S---------------------------S-----S------S------
S------------------------------------S---------------------------------S--------
-----S---------------------S--------------------S-------------------------------
-----------S-----------------S---------S----------------------------------------
---------S-----------------S----------------------------------------------------
---------------------S-------------------------------------------------S--------
-----S---S---------S-----------S---------------------------S------------------SS
S------S-----------------SS-SSSSS-SSS-S--S--------------------------------------
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---------------S------------------------------------------S----S----------------
--------------------S----------------------SS-SSSS-SS-SSS-----------------------
-----------------S----S-----------S------S--S-S-----S-------S------------S------
-S---------------------S-----------------------S---------S-----------S----------
-------S---S------------------------S-S--------S-------S------------S-S--S------
---SS-S--------------------------------------------S-----S----------------------
-----------------------S-----------S----------------S--------------SSSS---------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_991
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-----------AGGCTGCCTTACCTCGAGTA-------------------------------------------------
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>reverse_3192
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-----------------------------------------------------------------------GCATCCGTT
TGCTGTGTGTT---------------------------------------------------------------------
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