>input_sequence_76894
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------------ATGGCCATGGAGTACACCTCAAGGCGCTGGCTGGCCGCGGTGGCGGCCATCGTCCTGCTCTCGTGCGC
CCCGGCCCTGGCGGCGGCGGCCGGCCGGAAGCTGCTGCAGATCCAGATCAGCCAGGCGCAGCAGTACGTGGTGCCGCAGA
ACCACATGCGCGCGATCCACGAGCAGCGCCCGCTCAAGTGGAGCAGCGGGCTGGCGGACCAGGCGGAGCGCTGGGCGGCG
CGGTTCAAGGGCAACTGCGCGGCCGCGTCGGCGGCGATGCCGGGCGGCGTCAATGTGTTTCGCGGCTTCGGCGAGGCCGG
GAAGGCGTGGCAGCCCAGCGACGCGGTGGCGGCGTGGGCGGAGCAGGCCAACTACTTCGACTTCGCGTCCGGCGGCTGCG
CCTCCGGGAAGCTGTGCGCGCAGTTCAAGCAGGTGATGTCCAAAGGCAACACAGACGTCGGGTGCGCCACCGTGAAGTGC
ACCGACGGCACCACGCTTATGACCTGCCACTACTCGCCGCTGGGCAACATCTTCGGGGAGAAGCCCTTCTGA--------
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>chr6B_1_TraesCS6B01G379800
GACATGAGTGGGCGCCAACGGTCATTTAGACTATGTTAGAATAGGGTTTGGTCCAAATATGTCGAAAATGTAATGCATGT
GCTCCGATTTAGATGTAAATCATCCGGTTTTATG-AAAAAATTTGTCAAAGTTCCAATGAAAATCGTAGGGTCTGTGTAA
ATTTACATCAAATTTATTTCTTTTCATTAAATTCCATTCAAAATGTCTCCGGACATTTGCGGCTATGGTTGGATGCCTAA
CTCCTACATAAGTGATCGCAGTCTTGTCTCCACTGGTCCACAGACGATACGATGTCCGATTTAAGGGTCAGAGTTGGAGA
TGCCCTAGTAACAGTAGAGCAAACGAACCCTTGGGTGAACGGCTGGAGCGCACGGATCTACTAGCTAGTCCCTTGATCCT
ATATTGTGGCCTCGCACGCGCACCCACATGAAAGCATGTGATGTGTGCCACTGAGAAAGTTCGTGGCACCCCTCGATCCT
AGATGTGGCCGGCCGATTACTTCCGGGGCAGGCAAG------CTCCATCCCGAGTGAATGAAT-GATCCTTTGACCTGCA
GGCACCGTCGGTCGATTTCATTCCCCAGATGTACGTACTGACCTGTTGAAAACCCAAAACAAATCCCGAACGTGAGTACG
TACACTGCTGCCAAGCTAAACTATTCCCAAGTCAAACAAGAAGCCCCTCCCCGAAGCCGCATGGCCCCC---------TC
-----------------ACATGAAATGATTCGATCCGTGGGTCGATCGATCGCCACGGCACCGCGCGATCAGTAA-----
---GTAGATCTCCTAAGTCGTCTAGCTGTTACTAGTTGCATGT-AAAAATATTGTTACAAACTGACAACTCCGTCGTGTA
ATTGACCT-----TGTAGGTTCCAGTTAATTAACTAGCCCCGGTCGATGTGGTTAAAGAGACGCATGTGTATATATAGAG
GCCAGGCTTGAAGCTTTCCAGTTAATTAGTCC-TGGCTGAGTTTAGCAGACT---AGACAGTATAGCTAAGCTAGGGTCG
ACGACACTGGTCATGGCCATGGAGTACACCTCAAGGCGCTGGCTGGCCGCGGTGGCGGCCATCGTCCTGCTCTCGTGCGC
CCCGGCCCTGGCGGCGGCGGCCGGCCGGAAGCTGCTGCAGATCCAGATCAGCCAGGCGCAGCAGTACGTGGTGCCGCAGA
ACCACATGCGCGCGATCCACGAGCAGCGCCCGCTCAAGTGGAGCAGCGGGCTGGCGGACCAGGCGGAGCGCTGGGCGGCG
CGGTTCAAGGGCAACTGCGCGGCCGCGTCGGCGGCGATGCCGGGCGGCGTCAATGTGTTTCGCGGCTTCGGCGAGGCCGG
GAAGGCGTGGCAGCCCAGCGACGCGGTGGCGGCGTGGGCGGAGCAGGCCAACTACTTCGACTTCGCGTCCGGCGGCTGCG
CCTCCGGGAAGCTGTGCGCGCAGTTCAAGCAGGTGATGTCCAAAGGCAACACAGACGTCGGGTGCGCCACCGTGAAGTGC
ACCGACGGCACCACGCTTATGACCTGCCACTACTCGCCGCTGGGCAACATCTTCGGGGAGAAGCCCTTCTGATCCCGTCG
ATCTCGTCCGTCAAGCCGGCCGTCTCGTGCCGCGTGTGTTTCTGGTTG-----AGTCGTCTTGCCATGCTTTGCAGTTTA
CTACTATTACCCACACTTATATTAAACTTCCGGTGAACCAGTGTGTATTTTGGAGTTAATTTTTAGTTCAGACTTTTGAC
GTTGTTGCTTTTGCATTGTCGTGTCACTAACTTTGGCTTGTAGCCCTATTTTTGGGAAACAATGGGCATGTTTGGTTTGT
AGCTCAAGTTTATCAAGCCTAACCTTAGTCATATTACAACAACTTAGGGCATCTCCACGCACACCCACAAAACACACCCA
TACGCGACGGACTGAGCTGTCTGGACATAATTTGTCATCTAACGTGGACCCATATTTGTCCGTGGATGTGCTTGCTTGTC
CGAATTCCCACAAATTGAACGCAAATTGGCCGAGGTTTGCGGGCGCCCGGACCTCTGGTACGTAGGATTTCGACACCCTC
TGCCCACTCAAATCCCCCTCCTGAGTCAGGATTCGTCCCCGACTACATGCCCCCGTCCCCCTGCCGACGCCGTCCATGGC
GGACACCACACCTGAACAAGTGTTCGGCCTAATGTGATTGAGCTTTCTTGTTGAGCTTCTAGTTGTGTCCTAGAGTAAGC
ACGATGGCAGGTTACTCGGTGATGGAGAATGAGTTGTTGTGCGATGCGTGAAAGGTCGTATCTGCAGACTTTGTAGGCAT
GAGGCAAGGAAGCCTGAGCTTTTGGCAAAACGTGCATGCTTCATTTCATAAGCAAAAGCACGATGCGCCCTACGACTCGC
ACGTGATCCATGATCGCAACTTGAAGTCACTAGGCTGTAGGTGGTACACCACCTCCAACTCCATCAGATTTTTTTTGGTG
CGATTGCACAAATGGAGAGAAGGTGGACACGGGCGCGAAAACCATTGAGATCATAAGTTTTGCTTCTTGTTGCTCTAAAT
ATTGGTTAATTCATTCAGTATTGCAATTTGATAATCA
>chr6D_6
-----GAGTGGGCGCCAGCGGTCATTTAGACTGTGTTAGAATAGGGTTTAGTCCAAATATGTCGAAATTGTATTGCATGT
GCTCCGGTTTAGATGTAAATCATCCGGTTTTATGTAAAAAAATTGTCAAAGTTTCAATGAAAATCGTACGGTTTGTGTAA
ATTTGCATCAAATTTATTTCTTTCCATTAAATTCCCTTCAAAATGTCTCCGGACATTTGCGGCTACGGTTGGATGGCTAG
CTCCTACATAAGTGCTCGCAGTCTTGTCTCCACCGGTCCACAGACGATACGGTGTCCGATTTAAGGGTCATCGTTGGAGA
TGCCCTGGTAACAGTAGAGCAAACGAACCCTTGGGTGAACTGCTGGAGCGCACGGATCTACTTGCTAGTCCCTTGATCCT
ATATTGTGGCCTCGCACGCGCACCCACATGAAGGCATGTGATGTGTGCCACTGAGAAAGTTCGTGGCACCCCTCGATCCT
AGATGTGGCCGGCCGTTTACTTCCGGGGCAGGCAGGCAG------CATCCCGAGCGAATGAATGGATCCTTTGACCTGCA
GGCACCGTCGGTCGATTTCATTCCCCAGATGTACGTACTGACCTGTTGAAAACCCAAAACAAATCCC------GAATACG
TACACTGCTGCCAAGCTAAACTATCCCCAAGTCAAACAAGAAGCCCTGCCCCGAAGCCGCATGGCCCCCATGGCCCCATC
-----------------ACATGAAATGATTCGATCCATGGGTCGATCGATCTCCACGGCACCGCGCGATCAGTAATAAGT
ACAGTAGATCTCCTAAGTCTTCTAGCTGTTACTAGTTGCATGTAAAAATAATTGTCACAAACTGACAACTCCGTCGTGTA
ATTGACCT------GTAGGTTCCAGTTAATTAGCTAGCCCCGGTCGATGTG------------------CATATATAGAG
GCCAGGCTTGAAGCTTTCCAGTTAATTAGTCC-TGGCTGAGTTTAGCAGACT---AGACAGTATAGCTAAGCTAGGGTCG
ACGACACTGGTCATGGCAATGGAGTACACCTCAAGGCGCTGGCTGGCCGCGGTGGCGGTCATCGTCCTGCTCTCGTGCGC
CCCGGCCCCGGCTGCGGCGGCCGGCCGGAAGCTACTGCAGATCCAGATCAGCGAGGCGCAGCAGTTCGTGGTGCCGCAGA
GCCACATGCGCGCGATCCACGGCCAGCGCCCGCTCAAGTGGAGCAGCGAGCTGGCGGACCAGGCGGAGCGCTGGGCGGCG
CGGTTCAAGGGCAACTGCGCGGCCGCGTCGGCGGCGATGCCCGGCGGCGTCAACGTGTTCCGCGGCTTCGGCGAGGCCGG
GAAGGCGTGGCAGCCCAGCGACGCGGTGGCGGCGTGGGCGGAGCAGGCGAACTACTTCGACTTCAAGTCCGGCGGCTGCG
CCGCCGGGAAGCTGTGCGCGCAGTTCAAGCAGGTGATGTCCAAGGGCAACACGGACGTCGGGTGCGCCACCGTGCAGTGC
GCCGACGGCACCACGCTCATGACCTGCCACTACTCGCCGCTGGGCAACATCTTTGACGAGAGGCCCTTCTGATCCCGAAC
ATCTCGTCCGTCAAGCCGGCCGTCTCGTGCCGCGTGTGCTTCTGGTTG-----AGTTGCCTTGCCATGTTTTGCAGTTTA
TTACT---------------------------------------------------------------------------
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>chr6A_332
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------------AGTAGAGCAAACGAACCCTTGGGTGAACGGCTGGAGCGCACGGATCTACTAGCAAGTCCCTCGATCCT
AGACAGTGGCCTCGCACGCGCACCCACATGAAGGCATGTGATGTGTGCCACTGAGAAAGTTCGTGGCATCCCTCGATCCT
AGATGTGGCCGGCCGTTTACTTCCGGGGCAGGCAAGCTCCATCTCCATCCCGAGTGAATGAAT-GATCCTTTGACCTGCA
GACACCGTCGGTCGATTTCATTCCTCAGATGTACGTACTGACCTGTTGAAAACTCAAAATAAATCCCGAATGTGAGTACG
TACACTGCTGCCAAGCTAAACTATTCCCAAGTCAAACAAGAAGCCCCGCCCCGAAGCCGCATGGCCCCC---------TC
AATGTACGTGCCCCATCACATGAAATGATTCCATCCATGGGTCGATCGATCTCCACGGCACCGCGCGATCAGTAA-----
---GTAGATCTCCCAAGTCGTCGAGCTGTTACTAGCTGCATGT-AAAAAAATTGTTACAATCTGACAACTGCGTCGTGTA
ATTGACCTGTAGCTGTAGGTTCCAGTTAATTAGC----CCCGGTTGATGTG------------------TATATATAGAG
GCCAGGCTCGCAGCTT-CCAGTTAATTAACCAGTGGCCGAGTTTGCAGACTAGACAGACAGTATAGCTAAGCTAGG-TCG
ACGACACTAGTCATGGCAATGGAGTACACCACAAGGCGCTGGCTGGGCGCGCTCGCCGCCATCGTCCTGCTCTCGTGCGC
CCCGGCCCCGGCGGAGGCGGCCGGACGGAAGCTGCTGCAGATCCAGATCAGCCTGGCGCAGCAGTTCGTGGTGCCGCAGA
ACCACATGCGCGCGATCCAGGAGCAGCGCCCGCTCAAGTGGAGCAGCGGGCTGGCGGACCAGGCGGAGCGCTGGGCGGCG
CGGTTCAAGGGCAACTGCGCGGCCGCGTCGGCGGCGATGCCCGGCGGCGTCAACGTGTTCCGCGGCTTCGGCGAGGCCGG
GAAGGCGTGGCAGCCCAGCGACGCGGTGGCCGCGTGGGCGGAGCAGTCCAACTACTTCGACTTGGCGTCCGGCGCCTGCG
CCGCCGGGAAGCTGTGCGCGCAGTTCAAGCAGGTGATGTCCAAGGGCAACACGGACGTCGGGTGCGCCTCCGTGAAGTGC
GCCGACGGCACCACGCTCATGACCTGCCACTACTCGCCGCTGGGCAACGTCTTTGGCGAGAGGCCCTTCTGATCCCGTCG
ATCTCGCCCGTCAAGCCGGCCGTCTCGTGCCGCGTGTGTTTCTGGTTGAGTGAAGTCGTCTTGCCATGTTTTGCAGTTTA
TTAC----------------------------------------------------------------------------
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>SNPs
SSSSS------------S--------------S----------------S-----------------S----S-------
------S----------------------------------S-----------S--------------S---S-------
----S------------------S-----------S-----------------------------S---------S---S
--------------S------------------S-----------------S------------------SS--------
------S-------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------------------------S---------
-----------------------------------------------S--------------------------------
------------------------------------S--------------S----------------------------
-------------------------------------------------S------------------------------
--------------------------------S------------------SSSSSSSSSSSSSSSSSS-----------
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-----------------S--------------------------------------------------------------
--------S--------------------------------------------------------S--------------
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-----------------------------------------S-----------S-----S--------------------
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--S----------------------------------------S--------S---------------------------
S----------------S-----------------------------------S--S----S------------------
--------------------------------------------------------------------S-----------
S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_937
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-------------------------------------CCCCGGTCGATGTGGTTAAA-----------------------
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>reverse_2074
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-------------------------------------------------------------------------CACCCTC
TGCCCACTCAAAT-------------------------------------------------------------------
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