>input_sequence_76887
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-------------------------------------ATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCA
ACCCCATCATGCACGCGCAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTCTTCACCGTGCTGGGCGTCATCTCC
TTCCTCGCTGTCGTCGCCTGCGTCGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCA
CTACTACGGCACTAACACGGTGGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGA
GCTCGCGCGCCGTGGTCCACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCCGCGTGGAAGACC
GACGCCAAGGCCGACAACAGAGGGCGCCCGCAGCAGCAGCAGCACCACCACCAGCATCCCCAGGCCGGCATGCCGAAGGA
GTACGCCGGTTTCAGGTACCCCGCGGCTGCCAACGGCGCGGTCAGGCAAGGGCAAGTAAGGGGCGGAACGTTCGTCTCCG
CAAAGCCCGGTTCATGA---------------------------------------------------------------
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>chr6A_1_TraesCS6A01G274100
GCAGGCTGGCGTAATCTGAAGAGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTCTGTTCCTGTATGTAGGCAAAAGG
GTTATCGATTTCCATCCGTCGAGCATTCCTG-GCGACGCATGCTTCTCGTCTCGTGGCTCAATCAGTAGAATGCATCTGC
TCGAGTGACAACGACGTCCACGTTGCTACGTA-----CCTAGGCAAAATTATTGTGCCTCCTACACGCCGCCAAAATACC
ATCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACCAAACCCTA
CGCCTAACATGTCACCTCACGGAATTTGAGTATATGCGAGGCGTTTTAGATCGGCACGCCCAAGAAAGGTGGCTAGTCAA
GCAGTAGGCGCTCATTCCTC--CGCCCCCACAATCTGCTAAAGCGGAGCGGGGAAAGCAATCAAAGAAGCCAAAGCGATG
TGATGTCCCTGCCTGCTCCTGCTCGCTGCT----------GCTCCTCGCTGCTACGGTTGCTTTGATCCAATGCAATGCA
ACGTCCAAAAGCAAAAGCAGAGA----GC----------------------CAGCAGCACAGCACAGCACAGT-------
-----AGAGCGTGAGGGCGAGGCCAACCCT----------GAGGGA--------GACGTTGTGCCAAGCCCGCGCATTGA
ACTGCTCCAAAGCGCGCGCCTTTCTCGCGGCCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGTAAAAAA
AAAAAGAACGAATGAGTGAAAAGATGGGCGATGC-ACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTT
TGTTCAATTCAAACCCGGGCCTCTGCCTCTGCCTCTGCCCCGCTCCATCTGCCTCTGCCCCGCTCCATCATAAAAGGACC
ACACCACTACCCACGAAGCCAACGCTCCATCGCAAGCCATTTCCTTTGAGCGCAGAGACTCATCAGAGAGTAGTCTTCGA
GAGCACGAGAGGCGCAGAGAGGAGAGGAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCA
ACCCCATCATGCACGCGCAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTCTTCACCGTGCTGGGCGTCATCTCC
TTCCTCGCTGTCGTCGCCTGCGTCGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCA
CTACTACGGCACTAACACGGTGGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGA
GCTCGCGCGCCGTGGTCCACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCCGCGTGGAAGACC
GACGCCAAGGCCGACAACAGAGGGCGCCCGCAGCAGCAGCAGCACCACCACCAGCATCCCCAGGCCGGCATGCCGAAGGA
GTACGCCGGTTTCAGGTACCCCGCGGCTGCCAACGGCGCGGTCAGGCAAGGGCAAGTAAGGGGCGGAACGTTCGTCTCCG
CAAAGCCCGGTTCATGATCATCACAGTAGCTTTTAGGTTCATCACAGCTTGATGCATCTCATCATATGAT-AAAGAGTGT
CTGCTAGGCATTTACTACTAGGCATCCATGATCCATCGGCGATCATAGCGTGTTCGTTCTTCACTCTAGTTTTGGGGCGC
GCTCTGCAAAGTTTGTACCAGTTCCCAGTCACTTCCAGATTGTATTTTGTACATTAATT-CATCGAGCAGTGAAGAACAT
CCCATTCTCAAAGTAACCACGGCTGCACGAAAGCATCAGTCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTT
GATGGTGATGACTGGACACTCGGCGTGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACAC
CGACCGTTTAGTTCAAGCGGAAGTTCTGCTTTGCTTCACCCACAAGAATGGACCACAATATGCTAGTAGTTCAG----AA
AAAAGCCACACGGCATAGTTCAGTGAT-------GTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATACAAAATATAT-
---TGTGGTCACACAGGAAGGAACAAAACGAATGTACCTGAAAACATAAAAAGGAA------------------GTTGCA
TCATAAGGATGCATTCACACATA--ATGATAGAATGCATTTGGATTTGAAAAA-TATTCTGGGAAGATAAAACCCTCACA
CGCCC--TTATTCTGGAAAGACAAGATT-AGGTTGTGGAAAATTCGCATTTGTCACAGCTATTAGGTATGGGTGCAAACG
TAGCATATGGCATCAGTCCATGTGAAGACTTCACCATTTCTCGAAACTAAAGAACAAGTATAACAAAGTAAAAATGCCCT
TGCATCAGTGCTATAAGGTGTTGCAGAGATGTAATGTACTAGATGTAATGTACTCCCTCCGTCTCGTAATGTAAAAACGT
TTTTTGACACTACACTAGATTCAATAAACATCTTACATTATGAGACGGAGGGAGTATGACAGAATTACGTCCCATCATAA
ATATATCTCCTAAACTGG
>chr6D_1
GCAGGCTGGCGTAATCTGAAGGGCTTTACGTTACGCCGTTCAGTAGTCCAGTTCCTCTGTTCCTGTATGTAGGCAAAAGG
GTTATCGATTTCCATCCGTCGAGCATTCCTTTGCGACGCATGCTTCTCGTCTCGTGGCTCAATCAGTAGAATGCATCTGC
TCGAGTGACAACGACGTCCACGTTGCTACGTACAGTGCCTAGGCAGAATTGTTGTGCCTCCTACACGCTGCCAAAATACC
ATCCAGGGCTCCCACACTGAAGATGTCTACCACTAGACCGCATTCGAGCAAATATCATGGAACAGCAAGACCAAACCCTA
CGCCTAAGATGTCACCTAACGGAGTCTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAA
GCAGTAGGCGCTCATTCCTCTGCGCCCCCACAATCTGCTAAAGCGGAG-GGGGAAAGCAATCAAAGAAGCCAAAGCGATG
TGATGTCCCTGCC-------------TGCTCCTGCTCGCCGCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA----
-CGTCCAAAAGCAAAAGCAGAGA----GC----------------------CAGCAGCACAGCACAGTAGTACTGTGCTA
CAGTGAGAGTGTGAGCGCGAGGCCAACCGGGCTGCATGCCGAGGGA--------GACGTTGTGCCAAGCCCGCGCATTGA
ACTGCTCCAAAGCGCGCGCCTTTCTCGCGGTCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGGAAAAAA
AGAAAA---GAATGAGTGAAAAGATGGGCGATGCAACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTT
TGTTCAATTCAAACCCCGGCCTCTGCCTCGGCCTCT--------------------GCCCCGCTCCATCATAAAAGGACC
ACACCACTACCCACGAAGTTAACGCCCCATCGCAAGCCATTTCCTTTGAGCGCAGAGACTCATCAGAGAGTAGTTTTCGA
GAGCACGAGAGGCGCAGAGAGGAGAGGAGAAGCTGCCATGGCTTCCATGACCCAGCCCATGCCGTATTACCCCACCACCA
ACCCCATCATGCACGCGCAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCC
TTCCTCGCCGTCGTCGCCTGCGTGGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCA
CTACTACGGCACCAACGCGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCGA
GCTCCCGCGCGGTGGTCCACGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCGGCGTGGAAGACC
GACGCCAAGGCCGACAACAGAGGGCG---------GCCGCAGCAGCACCACCTCCATCCCCAGGTCGGCATGCCGAAGGA
GTACGCCGGTTTCAGGTACCCCGCGGCCGCGAACGGCGCGGTCAGGCAAGGGCAATTAAGGGGCGGAACATTCGTCTCTG
CGAAGCCCGGTTCATGATCATCACAGTAGCCTTTAGGT---TCACAGCTTGATGCATCTCATCATATGAT-A--GAGTGT
CTGCTAGGCATTTACTACTAGGCATCCATGATCCATCGGCGATCATGGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGC
GCTCTGCAAAGTTTGTACCAGTTCCCAGTCACTTCCAGATTGTATTTTGTATATTAATT-CATCGAGCAGTGAAGAACGT
CCCATTCTCAAAGTAACCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGCGGAGCTTCGTTGGCCTTGCGCTT
GATGGTGATGACTGGACACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACAG
CAGCCGTTTAGTTCAAGCGGAAATTCTGCTTTGCTTTACCCGCAAGAATGGACCACAATATAGGAGCAGTTCAGAATAAA
AAAAGTCACACGGCATAGTTCAGTGAT-------GTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAA----AT-
---TGTGGTCACACAGGAAGGAACAAAACGAATGTACCTGAAAACATAAAAAGGAAACCCTATGTATATACTAGGTTGCA
TCATAAGGATGCATTCACAAACTCTATGATAGAATGCATTTCGATTTGAAAAA-TATTCTGGGAAGGTAAAACCCTCACA
CGTTC--TTATTCTGGAAAGACAAGATTTAGGCTGTGGAAAATTCGCTTTTGTCACAGCTATCAGCTATGGGTGCAAACG
TAGCATATGGCATCAGTCCATGTGGAAAATAGTT-ATTTCTCGAAACTA-------------------------------
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>chr6B_1
GCAGGCTGGCGTAATCTGAAGGGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTATGTTCCTGTATGTAGGCAAAAGG
GTTATCGATTTCCATCCGTCGAGCATTCCT-TGCGACGCATGCTTCTCGTCTCGTGGTTCAATCAGTAGAATGCATCTGC
TCGAGTGACAACGACGTCCACGTTGCTACGTAGTA--CCTAGGCAGAATTATTGTGCCTCCCACACGCCGCCAAAATACC
ATCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACCAAACCCTA
CGCCTAAGATGTCACCTCACGGAATTTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAA
GCAGTAGGCGCTCATTCCTCTGCGCCCCCACAATCTGCTAAAGCGGAG-CGGGAAAGCAATCAAAGAAGCCAAAGCGATG
TGAGGTCCCTGCC-------------TGCT----------GCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA----
-CGTCCAAAAGCAAAAGCAGAGAGCAAGC----------------------CAGCAGCACAGCACAGTAGTACTGTGCTA
CAGTGAGAGCGTGAGCGCGAGGCCAACCGGGCTGCATGCCGAGGGACTGAGGGAGACGTTGTGCCAAGCCCGCGCATTGA
ACTGCTCCAAAGCGCGCGCCTTTCTCGCGGTCCGATGCGTTCAAAGATCTCTGCGGCGAGCGAGAGCGAGAGGGAAAAAA
AAAG-----GAATGAGTGAAAAGATGGGCGATGCAACATCATCATACCGGCGCTTGGAGTGCGAGGGCGAAAAGGAATTT
TGTTCAATTCAAACCCGGGCCTCTGCCTCTGCCTCT--------------------GCCCCGCTCCATCATAAAAGGACC
ACACCACTACTCACGAAGCCAACGCTCCATCGCAAGCCATTTCCATTCCCTTCCTTGAGGAA-CAGAGAGTAGTTCTCGA
GAGCTGAGAGGCAGCA-----GAGAGAAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCA
ACCCCATCATGCACGCGCAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCC
TTCCTCGCCGTCGTCGCCTGCGTCGCGGGGCGGCTGTGCGGCCGTCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCA
CTACTACGGCACCAACGCGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTTAAGTACCCGCCGATGAAGCCCATGCCAA
GCTCCCGCGCGGTGGTCCATGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGGGAAGCCCGCAGCGTGGAAGACC
GACGCCAAGGCCGACAACAGAGGGCGCCAGCAGCAGCAGCACCACCACCACCA------CCAGGCCGGCATGCCGAAGGA
GTACGCCGGTTTCAGGTACCCCGCGGCTGCCAACGGCGCCGTCAGGCAAGGGCAAGTAAGGGGCGGAACATTCGTCTCCG
CAAAGCCCGGTTCATGATCATCACAGTAGC--TTAGGT---TCACAACTTGATGTATCTCATCATATGATAA--GAGTGT
CTGCTAGGCAATT--TACTAGGCATCCATGATCCATCGGCGATCATAGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGC
GCTCTGCAAAGTTTGTACTAGTTCCCAGTCACTTCCAGATTGTATTTTGTACATTAAACCCATCAAGCAGTGAAGAACAT
CCCATTCTCAAAGTAACCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTT
GATGGTGATGACTGGACACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACAC
CAGCCGTTTAGTTCAAGTGTAAATTCTGCTTTGCTTTACCCACAAGAATGGACCACAATATACTAGTTCAG------AAA
AGAAGTTACACGGCATAGTTCAGTGATGTGCACAGTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAA----ATA
TATTGTGGTCACACAGGAAGGAACAAAACGAATGTACCTGAAAACATACAAAGGAAACCTTATGTATATACTAGGTTGCA
TCATAAGGATGCGTTCACAAACA--ATGATAGAATGCATTTGGATTTGAAAATTTATTCTGGGAAGATGAAACCCTCACA
CGCTCTGTTATTCTGGAAAGACATGATT-AGATTGCGGAAAATTCACATTAGTCACAGCTATCAGCTATGGGTGCAAACG
TAGCATATGGCATCAGTCCATGTGAAGACTTCACCATTTCTCGAAACTAAAAAACAAGTATAGCAAAATAAAAATACCCT
TGCATCAGTGCTATAAAGTGTTGCAGAGATGTAATGTA------------------------------------------
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>chr6B_1
GCAGGCTGGCGTAATCTGAAGGGCTCTACATTACGCCGTTCAGTAGTTCAGTTCCTATGTTCCTGTATGTAGGCAAAAGG
GTTATCGATTTCCATCCGTCGAGCATTCCT-TGCGACGCATGCTTCTCGTCTCGTGGTTCAATCAGTAGAATGCATCTGC
TCGAGTGACAACGACGTCCACGTTGCTACGTAGTA--CCTAGGCAGAATTATTGTGCCTCCCACACGCCGCCAAAATACC
ATCCGCAG--CCTACACTGGAGATGTCTACCACTAGACCGTATTCGAGCAAATATCATGGAACAGCAAAACGAAACCCTA
CGCCTAAGATGTCACCTCACGGAATTTGATTATATGCGAGGCGTTTTAGATCGGCATGCCCAAGAAAGGTGGCTAGTCAA
GCAGTAGGCGCTCATTCCTCCGCGCCCCCACAATCTGCTAAAGCGGAG-GGGGAAAGCAATCAAAGAAGCCAAAGCGATG
TGATGTCCCTGCC-------------TGCTCCTGCTCGCTGCTGCTCGCTGCTACGGTTGCTTTGATCCAATGCAA----
-CGTCCAAAAGCAAAAGTAGAGA----GCAAGCCAGCAGCACATCACAACACAGCAGCACAGCACATCA-----------
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------------------------------------------------------------GCGAGGGCGAAAAGGAATTT
TGTTCAATTCAAACCCGGGC------CTCTGCCTCT--------------------GCCCCGCTCCATCATAAAAAGACC
ACACCACTACTCACGGAGCCAACGCTCCATCGCAAGCCATTTCCATTCCCTTCCTTGAGAAA-CAGAGAATAGTTCTCGA
GAGCTGAGAGGCAGCA-----GAGAGAAGAAGCTGCCATGGCTTCCATGACTCAGCCCATGCCGTATTACCCCACCACCA
ACCCCATCATGCACGCGCAGCCGGCCACCACGTCCAGGGGCTCCTTCGCGCCGGTGTTCACCGTGCTGGGCGTCATCTCC
TTCCTCGCCGTCGTCGCCTGCGTCGCGGGGCGGCTGTGCGGCCGCCGGCTCTCCAAGAAGAAGGCCTACGCCGACCAGCA
CTACTACGGCACCAACGCGGTCGGCGGCGACCTGGAGAAGGGCTTCGAGGTCAAGTACCCGCCGATGAAGCCCATGCCAA
GCTCCCGCGCGGTGGTCCATGACATGGACGACGGCTTCGAGATCAAGTTCGCGCCGGAGAAGCCCGCGGCGTGGAAGACC
GACGCCAAGGCCAACAACAGAGGGCGCCAGCAGCAGCAGCAGCACCACCACCA------CCAGGCCGGTATTCCGAAGGA
GTACGCCGGTTTCAGGTACCCCGCGGCTGCCAACGGCGCCGTCAGGCAAGGGCAAGTAAGGGGCGGAACATTCGTCTCCG
CAAAGCCCGGTTCATGATCATCACAGTAGC--TTAGGT---TCACAACTTGATGTATCTCATCATATGATAA--GAGTGT
CTGCTAGGCAATT--TGCTAGGCATCCATGATCCATCGGCGATCATAGCGTTTTCGTTCTTCACTCTAGTTTTGGGGCGC
GCTCTGCAAAGTTTGTACTAGTTCCCAGTCACTTCCAGATAGTATTTTGTACATTAAACCCATCAAGCAGTGAAGAACAT
CCCATTCTCAAAGTAACCACGGCTGCACGAAAGCATCAATCGTCGATGGGGTCCTGGGGAGCTTCGTTGGCCTTGCGCTT
GATGGTGATGACTGGACACTCGGCATGCTTGACGCAGAACTCGCTCACCGTGCCCACGAAAACCCTGCAACGAAAAACAC
CAGCCGTTTAGTTCAAGTGTAAATTCTGCTTTGCTTTACCCACAAGAATGGACCACAATATACTAGTTCAG------AAA
AAAAGTTACACGGCATAGTTCAGTGATGTGCACAGTGCACTTTGTCAGAAGAAGAATCTAAGCTGCATATAAA----ATA
TATTGTGGTCACACAGGAAGGAACAAAACGAATGTACCTGAAAACATACAAAGGAAACCTTATGTATATACTAGGTTGCA
TCATAAGGATGCGTTCACAAACA--ATGATAGAATGCATTTGGATTTGAAAATTTATTCTGGGAAGATGAAACCCTCACA
CGCTCTGTTATTCTGGAAAGACATGATT-AGATTGCGGAAAATTCACATTAGTCACAGCTATCAGCTATGGGTGCAAACG
TAGCATATGGCATCAGTCCATGTGAAGACTTCACCATTTCTCGAAACTAAAAAACAAGTATAGCAAAATAAAAATACCCT
TGCATCAGTGCTATAAAGTGTTGCAGAGATGTAATGTA------------------------------------------
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>SNPs
---------------------S----------------------------------------------------------
------------------------------S-------------------------------------------------
---------------------------------------------S----------------------------------
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-------S---------------------S--------------------------S-----------------------
------------------------------------------------S-------------------------------
-------------SSSSSSSSSSSSS-----------------S--------------------------------SSSS
S--------------------------------------------------------------------SSSS-------
---------------S------------SS--------------------------------------------------
------------------------------S------------------------------------------S------
-----SSSS-----------------------------------------------------------------------
------------------------------------SSSSSSSSSSSSSSSSSSSS------------------------
--------------------------------------------------------------------------S-----
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-------------------------------------------------------S------------------------
--------S-----------------------------------------------------------------------
------------S---S----S----------------------------------------------------------
----S-----S--------------------------------------------------------S------------
----------------------------S------------------------S--------------------------
---------------------------------------------------------------------S----------
------------------------------S-------SSS-------------------------------SS------
---------------------------------------------------S----------------------------
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--------------------------------------S-----------------------------------------
------------------------S-------------------------------------------------------
-SS-------------------S-------------S------------------------S------------------
-----S---------------------------------------------------------------S---SSSS---
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-------------------S-S----------------------------------------------------------
---S----------------------------------------------------------S--S--------------
---------------------------------------------------S----------S----S-------S----
----------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_656
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----------------------------------------------------------------------------CAGC
ACAGTAGAGCGTGAGG----------------------------------------------------------------
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>reverse_2528
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-----------------------------------------------ATGTACTCCCTCCGTCTCGT-------------
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