>input_sequence_76878
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---GACGGCCTGCTCTGCTACACCGAAATGGCCGGGGAGCTCATGAGCCTCGGTGTCCTTGAGAAGCACTTCGGTGTGGA
CGAGGCCGGCGGCGTTGGTCCTGACGAGCTCGCGAAGCTCTACCGCGGCCTGTTCGCACGCT------------------
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-----------------------------------TCGACCACGACGGCAACGGCACAGTGGACCGCGAGGAGTTCCGGG
CGGAGATGAAGGAGGTCATGCTCGCCGTGGCCAACGGGCTCGAGTTCCTGCCGGTGCAGATGGTCGTGGAGGAAGGGAGC
TTTCTCAAGGTGGCGGTGGACAGGGAGCTGGCCAGAGCTACGTGACCGA-TTTTGCTTGTGCTTGTACGGTTACGAGTGT
ATGCTGCAGAGC------ATGAGCCAGGCATCGTTAAGTGAGTGCTAGTGTTTTTTTTCTCCATTCGAAACGAGGACTAC
TAATGCGGAATGGCATTAGGCTATCTAAGTGTGATTGCGTATTTACAGTGGCAGTCATTTTTTTTTGAACCGGGCGTACC
CTTTTTCATTTGCATTAAACGGAAATACAATAGTTCCAGATAT-------------------------------------
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---
>chr5D_1_TraesCS5D01G269500
ACAGCAGGAAGAGAGGGGTTCACCTCGGCCGGCGACGGAAGCCACCACGCCGCGCACGCCTGCTCTCCCTTCCCCCTTCC
CCCTTTCTTTTCTCCGGTCTGCAGTGTCGCGCCTCTCCCTGTTCATCTCTGTCCTGTGGCAGCGGAGCTAGGGCGCGGCC
GGCAGCCAGCGACGGCGGCAAAAGACACCACACCGCGTGAGCTCCGTCACTTTTCCTTTCTTCTTTCCTCCGTCCATCTC
TCCCTCCGATTCCAGCAACAGAGAGAGA-AAGGGACGAGCGGTCAAGACCTCCTCTGCTCCCCTTCGCGCCCGAGGGCGG
CGGAG----CGGCTGCGGCGCCGTGGTATTCTCCCTCACCAGCTGTGCGTCCACCT-CGCGGTGAGCGCGCCGCCGTCGA
GCGGTTTGGTCGCGGTGCC----CTTT-GCCCCAT----GGGGTG----GTTCTTCTTCCCGAA-TCCTCGGCTTGCCGA
TGCGATTCGGGATCGAGAGGAACAG-CGCGGCCATGTGCGGCGGCGCAACTTTTCTTT-GAGA------TTTCTTTGCCC
TGTC---------------------TAGGGTTCTTGGGGAAAGGGGA-------TTT----C-TTTCTGTGA--------
--------TTT--CTTTTCAACTGAAAA-AA-TCTAACCCGATCTGG----CTGATACCATTGATAGAT---GCACTTTG
GATCG-GATAGGTTAGATC-AATCCGGTA-ACCTATCTTCTGCCTTGCCTTGCGAGCTTGAACCAGCAGCCATGGTGATG
TTGTGGT-GCCTGTGATGGCAGTGGGATGGCGGCGGTGGT----GTGCTTCTCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGGGATTGTTGGTGGGGATTGTGCCAGCAA-TGAACTTCGTGACATGTG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
ATG--CAAGGGCCCATCGAACGGGAGAGAGATCAACCTAACAAAGGGCGCCTTCAACGCCTCGCGGCCCTCGACGCCAAG
CACGACGGCCTGCTCTGCTACACCGAAATGGCCGGGGAGCTCATGAGCCTCGGTGTCCTTGAGAAGCACTTCGGTGTGGA
CGAGGCCGGCGGCGTTGGTCCTGACGAGCTCGCGAAGCTCTACCGCGGCCTGTTCGCACGCT------------------
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-----------------------------------TCGACCACGACGGCAACGGCACAGTGGACCGCGAGGAGTTCCGGG
CGGAGATGAAGGAGGTCATGCTCGCCGTGGCCAACGGGCTCGAGTTCCTGCCGGTGCAGATGGTCGTGGAGGAAGGGAGC
TTTCTCAAGGTGGCGGTGGACAGGGAGCTGGCCAGAGCTACGTGACCGA-TTTTGCTTGTGCTTGTACGGTTACGAGTGT
ATGCTGCAGAGC------ATGAGCCAGGCATCGTTAAGTGAGTGCTAGTGTTTTTTTTCTCCATTCGAAACGAGGACTAC
TAATGCGGAATGGCATTAGGCTATCTAAGTGTGATTGCGTATTTACAGTGGCAGTCATTTTTTTTTGAACCGGGCGTACC
CTTTTTCATTTGCATTAAACGGAAATACAATAGTTCCAGATATAACCAGGAAGAAGGGAAAGAGGGTAGCGAGTAGTCAT
GATTATTACTTAAAGATCAGGCAGTTCATTTGGTGGTTTTGTGAAGCTTTTCTTTCAGTTTTGCTAAACATTAGGTACCC
GAAATTTTCATTTGATGGTTTTGTGAAGCTTTTCTTTCAGTTTTGCTAAACATTAGGTACCCGAATTTTTCATTGTGTCG
TGGTCACTGCTTCACCCTAAGGTCGAGACGTGAAGGTTGTGGACGGACGTAGATTCCACGGCAGTGTGAGCCGTGAACGA
GCGGGAGTCGGCGACTCTGCGGCACGCCGCAGTCTTGACGGCAGAGTGAGTCCTAAATTTGATTGCTTAGATGAGGTGCT
AAGGACATTAAAGCTTAGCAACTAAACTCCATAATGCATAGATGCTTAGTTTTTGGTTGCTAAGCTCTCTTCATTTAATT
AGGTATAGACTCATATTTGTGTTTCCACCTAGATACACACGCTTAACATTGTTTTTTTCTGGGTCATCATGCTGCTCTCT
CTCTCTCTCTCTCTCTTCTTAATTGACATGTCACATCATATTTTTGCTTAGTTCGCAAGCTTAGCACATGTATAAGGTGA
AACATTGGGAGAGGCTTGAGGAGATACTCAGGCTTAGGTGATACCATGACGTGGGCTCCTGTGAGCCGTTGGATCTCAGA
TCCGACGACTCCTAAGAGCTCTTGAATATTTTGCATAAAAATCATCCGAGTCTTGAAATTGCGCGAAGGTGTAATAGCTC
CTTAGATGCCGTTGGATCTTAGATCCAACAGTCCACGAGCCCGTATCATGGTATGATCTAAGTCTTGGTATCACCTGAAA
CTTTCCCCTATAGATTAGGAGGGGGGAGGGGGTCTTAGCTGGATGGCCTTGAGTGCTGCTGGCTTGTGGTGAGGGATGGA
ACGGGGGGGTGGCCTTAGGTGGTGGTGGCTTGTGGCGAGGGTTGGATGGGGGGGAGGGTCACAGACACACCGCAGGCCCG
CAG
>chr7D_26
CGGCGGCGG--------------------------CGGAAGCCACCGCGCCCCGCGCGCCTGCTCTCCCTTCCCCCTTTT
CCCTTTCTTTTCTCCGGTCCGCAGCGCCGCGCCTCTCCTTGTTCATCTCTGCCCAGTGGCAGCGGAGCTAGGGCGCGGCC
GGCCGCCGGCGACCGCGGCAAAAACCACCACACCGCGCGAGCCCCGTCACTTTTCCTTTCTTCTTTCCTCCGTCCATCTC
TCCCTCCGATTCTAGCAACAGAGAGAGA-AAGGGACGAGCAGTCAAGACCTCCTCTGCTCCCCTTCGCGCCCGAGGGCGG
CGGAGCGGACGGCTGCGGCGCCGTGGCCTTCCCCCTCGCCGGCTGTGCGTCCACCT-TGCGGTGAGCGCGCCGCCGTCAA
GCGGTTTGGTCGCGGTGCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGAA-TCCTCGGCTTGCCGA
TGCGATTCGGGATCGAGAGGAACGG-CGCGGCCATGTGCAGCGGCACAACTTTTCTTT-GAAA------TTTCTTTGCCC
TGTC---------------------TGGGGTTCTTGGGAAAAGGGGA-------TTT----TTTTTCTGTGA--------
--------TTT--CTTTTCAACCGAAAA-AA-TCTAACCCGATCTGG----CTGATACCATTGATAGAGTG-CTTTG--G
ATCGG-G-ACGGTTAGATC-ATTCCTGTGAACCTACCTTCTCCTTGTCCAGATGAGGAACTCCCGGTGCCGGCCATAGTG
AC--GGTGGCCGGTGATGCCAGAGAGTGGATGGCGGCGGAGGTGGTGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAAATCGGTAGGGC---GTAGGTGGGGTTTGTGGCAGCGA-TGAACTTCATCACTTGTG-CCGCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGC-CACCAACCATATAAGGGTTGGGCGCCCCCGATCAGGGCACA
GAT--CTAAGGGCC------------------------------------------------------------------
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---
>chr4A_41
----------------------------------------GCCACCGCGCCGCGCGCGCGCACTCTCCCTTCC---TTTT
CCCTTC---TTCTCCGTTTCGCAGCGCCGCGCCTCTCCCTGTTCATCGCTGTCTCGTGGCAGCGGAGCTAGGGCGCGGCC
GGCCGCCGGCGACGGCGGCAAAAACCACCACACCGCGCGAGCCCAGTCACTTTTCCTTTGTTCTTTCCTCTGTCCTTCTC
TCCCTCCGATTCCAACAACAGAGAGAGAAAAGGGACGAGCGGTCAAGACCTCCTCTGCTCCCCTTCGCGCCCGAGGGCAG
TGGAGCGAATAGCTGCGGCGCCGTGGCCTTCCCCCTCGCCGGCTGTGCGTCCACCT-TGCGGTGAGCGCGCCGCCGTCGA
GCGGTTTGGTCGCGGTGCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGAA-TCCTCGGCTTGCCGA
TGCGATTCGGGATCGAGAGGAACGA-CGCGGCCATGTGCGGCGGCGCAACTTTTCTTT-GAGG------TTTCTTTGTCC
TGTC---------------------TAGGGTTCATGGGAAAAGGGATTTCT---------------TTCTGTTTCTTTGA
TG------TAT--TCTTTTACCGAAAAT-CT-TCTAGCCCGATCTGGCTACCTGATACCATTGATAGAT---CCTTA--G
ATCGG-AGTGGGCTAG--TAGATCCGGTGAACCTACCTTCT---------------------------------------
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---
>chrUn_81
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CCCTTTCCTTTCTCCGTTTCGCAGCGCCGCGCCTCTCCCTGTTCATCATTGTCCCGTGGTAGCGGAGCTAGGGCGCGGCC
GGCCGCCGGCGACGATGGCAAAAACTACCACACCGCGCGAGCCTCGTCACTTTTCCTTTCTTCTTTCCTCCGTCCAGCTC
TCCCTCCGATTCCAACAACAGAGAGAG-AAAGGGATGAGCGGTCAAGACCTCCTCTGCTCCCCTTCGTGCCCGAGGGCAG
TGGAGCGGACGGCTGCGGCGCCGTGGCCTTCCCCCTCGCCGGCTATGCGTCCACCT-TGCGGTGAGCGTGCCGCCGTCGA
GCGGTTTGGTCGCGGTGCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGAA-TCCTCGGCTTGCCGA
TGCGATTCGGGATCGAGAGGAACGG-CGCGGCCATGTGCGGCGGTGCAACTTTTCTTT-GAGG------TTTCTTTGCCC
TG-G---------------------TAGGGTTCTTTGGGGGAGGGATATCTCTTTTT----C-TTTCTCTGT--------
--------TTTAGCTTTTTACTGAAAAT-CT-TCTAGCCCGATCTGGCTACCTGATACCATTGATAGAA---CCTTA--G
ATCGG-AGTGGGCTAG--GAGATCCGGTGAACCTACCTTGTCCTGGTGCAGATGAGGAACTCCCGGTGCCGGCCATGGTG
AC--GGTGGCCGGTGATGGCAGTGAGTGGATGGTGGCGGT----GTGCAGGCAGTGGCGGCGGCGGAGCTTCCCGTCACT
GTCAGCGCTAGACCTAGATCGGGTCGGGGTTTTCGGTGGGGAGCCTGGCAACACGTGAACCTCGTACTGCGTGCCGCCGA
CCCCCACCTCTTTATGTAGC-GC-TGCGTGACAGGGGCCCGTCAACCATATTGTGGTTGGGCGCCCCCGATCAAGGCGCG
A-------------------------------------------------------------------------------
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---
>chr6B_90
--------------------------------------------------------------------------------
---------TTCTCCATTTTGCAGCACCGCGCCTCTCCCTGTTCATCGCTGTCCCGTGGCAGCGGAGCTAGGGCGCGGCC
GCCCACCGGCGACGGCGGCAAAAACCACCACACCGCGCGAGCCCCGTCACTTTTCCTTG----TTTCCTCCGTCCATCTC
TCCCTCCGATTCCAACAACAGAGAGAG-AAAGGGACGTGCGGTCATGACCTCCTCTGCTCCCCTTCGCGCCCGAGGGCAG
TGGAGCGGACAGCTGCGGTGCCGTGGCCTTCCCCCTCGCCGGCTGTGCGTCCACCT-TGCAGTGAGCGCACCGCCGTCGA
GCGGTTTGGTCGCGGTGCC----CTTT-GCCCCGT----GGGGTG----ATTCTTCTTCCCGAA-TCCTCGGCTTGCCGA
TGCTATTCGGGATCGAGAGGAACGG-CGCGGCCATGTGCGGCGGCACAACTTTTCTTT-GAGG------TTTCTTTGCCC
TG-C---------------------TAGGGTTCTTTGGGGGAGGGATATCTCTTTTT----C-TTTCTCTGT--------
--------TTA--ACTTTTTACCGAAAA-TCATCTAACCAAG-ATGG---CCTGATACCATTGATAGAT---CTTGA--T
GATCG-GAGTAGCTAGATC-TTTCCGGTACACCTACCTTCTGCTGGTGCAGACGAACTCGATCCAGCGCCGGCCATGGTG
AAGTAGGGGCCGGTGATGGCAGAGAGACGGCAGC---GTAGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGAAGGG-AGTGTCGGTGGGGATTGTGGCAGCGA-TAAACCTCGTAAGTCGTG-CCCCGG
CCCCCACCTCTGTTAATATA-GCATGGGTCACAGGGGCCCACCAACCATAAT-GGGTTGGGCGCCCCCGATCAGGGCGCA
TTGACCAAGGGCC-------------------------------------------------------------------
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---
>chr1B_212
TTTCT---------------------------------------------------------------------------
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---------------------------------------------------------TTCTCCTTTCCTCCGTCCATCTC
TCCCTCCGATTCCAGCAACAGAGAGAG-AAAGGGACGAGCGGTCAAGACCTCCTCTGCTCCCG-TCGTGCACGACCGCGG
CGAAGCGGACGGCTGCGGTGACGTGGCCTTCCCCCTCTCCGGTTGTGCGTCCACCT-TGCGGTGAGCACGA--CCATCGA
GCGGTTTGGTCGCGGTGCC----TTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCTGGA-TCCTCGGCATGCCGA
TGCAATTTGGGATCGAGAGGAACGG-CACGGCCATGTGCGGTGGCGAAACTTTTCTTT-GAGA------TTTCTTTGCTC
TGTC---------------------TAGGGTTCTTGGGGAAAGGGGA-------TTT----C-TTTCTGTGA--------
--------TTT--CTTTTCAACCGAAAA-AA-TCTAACCCGGTCTGG----CTGATACCATTAATAAATTCACTTTG--G
CTCGG-A-TAGGTTAGATC-AATCTGGTAAACCTACCTTCTGCCTTGCCTTGCGAGCTCAAACCAACAGCCATGGTGATG
TTGTGGC-GGCGGTGATGGCAATGAGATGGTGGTGGTGGT----GTACTTCCCGTGAGCA--------------------
--CCGCGGTAACCCTAGATCGGTAGGGGATTGTTGGTGGGGATTGTGGAAGCGA-TGAACTTCGTCAGTCATG-CCCCGG
CCCCCACCTCTGTTTATATATGCGCGGGTTACAGGGGCCCACCAACCAGAAGAGGGTTGGGCTCCCCCGATCAGGGCGCG
GAT--CTAAGGGCCC-----------------------------------------------------------------
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>chr3D_319
GCGGA---------------------------------------------------------------------------
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---------CGGCGGCGGCACTGTGGCCTTCCCCCTCGCCGGCTGTGCGTCCACCT-TGCGGTGAGGGCGCCTCCGTCGA
GCGGTTTGGTCGCGGGTCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGGA-TCCTCGGCATGCCGA
TACGATTCAGGATCGAGAGGAACGG-CGCGGCCATGTGCGGCGGCGCAACTTTTCTTT-GAGA------TTTCTTTGCCC
TGTC---------------------TAGGGTTCTTGGGGGAAGGGGA-------TTTCTTTC-TGTGA---TTTCTTTT-
------------------CAACCGAA---AA-AATAACCCGATCTGG----CTGATACCATTGATAGAC---CTTGA--G
GATCG-AGTAGGCTAGATTAGATCCAGTAGTCCTACCTTCTCCTGTTGTTGAAGAGCTCGAGCCGGTGCCAGCCATGGTG
AAGTAGCGGCCGGTGATGGCAAAGAGATGGCGGCGGTGGT----GTGCTTCCCATGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGA-AGTGTCGGTGGGGATTGTGGCAGCGA-TTAACCTCGCATTGCATG-CCCCGG
CCCCCACCTCTGTTTATATA-G----------------------------------------------------------
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>chr5D_329
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-------------TGCGGCGCCGTGGCCATCCCCCTCGCCGGCTGCGCGTCCCCCT-TGCGGTGGGCGCGCCGCCGTCGA
GCGGTTTGGCTGCAGTGTA----CTTT-GCCCCTTTC--GGGGTG----GTTCTTCGTCTGA--CGCCTCGGCTTGCCGA
TGCGTGTCCGAATCGAGAGGAACAGGTGCGACCATG-ACGGCGGCACAACTTTTCTTT-TAGA------TTTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGGGGAGGGA--------TT----C-TTTCTGTGA--------
--------TTT--CTTTTCAACCGAAAA-AAGTCTAACCCGATCTGG----CTGATACCATTGATAGATTG-CTTTG--G
ATCGG-A-TAGGTTAGATC-ATTCCGGTACACCTACCTTCTCCTTGTCCAGACGAGCTCGATCCAGCGCCGGCCATGGTG
AAGTAGGGGCCGGTGATGGCAGAGAGATGGCGGCGGCGGT----GTGCTTCCCGTGAGCA--------------------
--CCACGCTAACCCTAGATTGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTCGTGAGTCGTG-CCCTGG
CCCCCACCTCTGTTTATATA-GCGCAGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
AGT--CAGGGGCCC------------------------------------------------------------------
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>chr4D_332
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----------------GGCGCCGTTGCCATTCCCTTCGCCGGCTGCGCGTTCCCCTCTGTGGTGAGCGCGCCGCCGTCGA
ACGTATCGGCCGCGGTGCA----CTTT-GCCCCTCGC--GGGGTG----GTTCTTCGTCCCCGC-ACCTCGGCTTGCCGA
TGCGTGGGGGGATCAAGAGGAACGGGCGCGGCCTT--ACGGCGGCGCT-CTTTTC---------------TTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGGAAGGGGA-------TC-----------------TCTTTTT
CTGTTTTTGTT--TCTTTGTACCGAAAT-CA-ACTAGCCCGATCTGG----CTGATACCATTGATAGAC---CTTTG--G
ATCGG-AGTAGGCTAG--TAGATCCGGTGAACCTACCTTGTGCAGCAGCGGATGAACTCGAGCCGGAGGCCATCGTGATG
CTAGGGCACACGGCGATGGCAGAGAGTAGGTGAT---GGTGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-A-------------TTGTGGCAGCGA-TTAACCTCGTGAATAGCG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
A-------------------------------------------------------------------------------
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>chr3D_334
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------------------CGCCGTTGCCATTCCCTTCGCCGGCTGTGCGTTCCCCTCTGTGGTGAGCGCGTCGCCGTCGA
ACGGATCGGCCGCGGTGCA----CTTT-GCCCCTCGC--GGGGTG----GTTCTTCGTCCCCGC-ACCTCAGCTTGCCGA
TGCGTGTGGGGATCGAGAGGAACGG-CGCAGCCGGA-GCGGCGGCGCAACTTTGCTGT-TAGG------GTTCTTTG---
-------------------------------------GGGAGGGGAA-------CTT------T-------TTTCTTTTT
CTGTTTTTGTT--TCTTTGTACCGAAAT-CA-ACTAGCCCGATCTGG----CTGATACCATTGATAGGAA--CTTTG--G
ATCGG-AGTATGCTAG--TAGATCTGGTGAACCTACCTTGTCCAGCAGTGGATGAACTCGAGCCGGAGGCCATCGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTGGGCGA----GGTGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCACTAACCCTAG---------------TAGGTGGGGATTGTGGTAGCGA-TTAACCTCGTGAGTCGTG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGTCCCCGATCAGGGCGCG
A-------------------------------------------------------------------------------
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>chr3D_362
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----------------------------------------------GCGTTCCCCT-TGTGGGGAGCGCGCCGCCATCGA
ATGGGTCGGTGGTGGTGTT----CTTT-GCCCCTGAAAAGGGGTG--GTGTTCTTCTTCTCGAT-GCCTCGGCTTGCCGA
TGCGCATCGAGATCGAGAGGAACGG-CGCGGCCTTG--CGGCGGCACAACTTTTC---------------TTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGGAAGGGGA-------TCT----C-TTTTCCTGTTTCTTTTT
CTGATTTTGTT--TCTTTGTACCGAAAT-CA-ACTAGCCCGATCTGG----CTGATACCATTGATAGAA---CTTTG--G
ATCGG-AGTAGGCTAG--TAGATCCGGTGAACCTACCTTGTCCGGCAGTGGATGAACTCGAGCCGGAGGCCATCGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTTGGCGAC---GGTGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTCGTGAGTCGTG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCATAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
A-------------------------------------------------------------------------------
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>chr5D_367
CACCTCGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------AGGTGAATGCGCCGCCGTCAA
ACGGCTCGGTAGTGGTGCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGGA-TCCTTGGCATGCCGA
TGCGATTCGGGATCGAGAGGAATGA-CGCGGCCATG-ACGGCGGCGCTACTTTTCTCCGTTGAGGGATTTTTCTTTGCCC
TGTCAG-------------------TGGGGTTCTTTGGGGGAGGGAA-------AAA----C-TTTTTCT------TTGA
---------TT--TCTTTCTACCGAAAA-GC-CTAAACCCAATCTGG----CTGATACCATTGTTAAAT---CCATG--G
ATCGG-G-TAGGTTAGATC-AATCCGGTAGTCCTACCTTCTCTTGGTGTTTAAGAGCTTGAGCCGGTGCCGGCCATGGCG
AGGTAGTGGTCGGTGATGGCAGAGAGATGGCGGCGATGGT----GTGCTTCCCGTGAGCA--------------------
--CCGTGCTAACCCTAGATCGGTAGGG-AGTGTCGGTGCGGTTCATGGTAGCGA-TTAACCTCGTGACTCGTA-CCGCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCATAGGGGCCCACTAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
ATG--CAAGGGCCC------------------------------------------------------------------
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>chr7D_367
CACCTCGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TGGTGAACGCGCCGCCGTCAA
ACGGCTCGGTGGTGGTGCCTGTACTTT-GCCCCTGTGGGGGGTTG----GTTCTTTGTCCCTGTCGCCTCGGCTTGCCGA
TGCGCGACGGGATCGAGAGGAACAGGCGCGGCCTT--ACGGCGGCGCT-CTTTTC---------------TTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGGAAGGGGGG------TCT----C-TTTTTCTGTTTCTTTTT
CTGTTTTTGTT--TCTTTGTACCGAAAT-CA-ACTAGCCCGATCTGG----CTGATACCATTGATAGATTG-CTTTG--G
ATCGG-AGTAGGCTAG--TAGATCCGGTGAACCTACCTTGTCCGGCAGTGGATGAACTCGAGCCGAAGACCATCGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTGGGCGA----GGTGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTAGTAAGTCGTG-CCCTGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGAGCGCG
AGT--CAAGGGCCC------------------------------------------------------------------
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---
>chr5D_373
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----------------------------------------------------------GCGGTGAGCGCGCCGCCGTCGA
ATGGATCGGTGGTGGTGCT----CTTT-GCCCCTGTG--GGGTGA----GTTCTTCGTCCGA--CGCCTCGGCTTGCCGA
TGCGCGTCCGGATCGAGAGGAACAGGTGCGGCCATG-ACGGCGGCACAACTTTTCTTTTGAGA------TTTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGAGAAGGGA-------TTT----C-TTTCTGTGA--------
--------TTT--CTTTTCAACCGAAAA-AA-TCTAACCCGATCTGG----CTGATACCATTGATAGTAC--CTTTG--G
ATCGG-A-TAGGTTAGATC-ATTCCGGTGAACCTACCTTGTCCGGCAGTGGATGAACTCGAGCCAGAGGCCATCGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTGGGCGA----GGTGGTGGAGCTTCCTGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTCGTAATTAGCG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGAGCGCCCCCGATCAGGGCGCG
AGT--CAAGGGCC-------------------------------------------------------------------
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---
>chr7D_373
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----------------------------------------------------------GCGGTGAGCGCGCCGCCGTCGA
ATGGATCGGTGGTGGTGCT----CTTT-GCCCCTGTG--GGGTGA----GTTCTTCGTCCGA--CGCCACGGCTTGCAGA
TGCGCGTCCGGATCGAGAGGAACAGGTGCGGCCATG-ACGGCGGCACAACTTTTCTTT-GAGA------TTTCTTTGCCC
TT-C---------------------TAGGGTTCTTTGGGAGAAGGGA-------TTT----C-TTTCTGTGA--------
--------TTT--ATTTTCAACCGAAAA-AA-TCTAACCCGATCTGG----CTGATACCATTGTTAGAC---CCAC-TTG
GATTG-TGTAGGCTAG--ATATTCCGGTACACCTACCTTCTCCTTGTCCAGACGAGCTCGAACCAGTGCCGGCCATGGTG
AAGTAGTGGCCGGTGATGGCAGAGAGATGGCGGCGGTGGT----GTGCTTCCCGTGAGCA--------------------
--CCGCGCTAGCCCTAGATCGGTAGGG-ATTGTAGGTGGAGATTGTGGCAGCGA-TTAACCTCGTTAATCGTG-CCCCGG
CCCCCATCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCTCCCGATCAGGGCGCG
AGT--CAGGGGCCC------------------------------------------------------------------
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>chr6D_375
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------------------------------------------------------------GGTGAACGCGCCGCCGTCAA
ACGGCTCGGTGGTGGTGCC----CTTT-GCCCCGT----GGGGTG----GTTCTTCTTCCCGCA-TCCTCGGCATGCCGA
TGCGATTCGGGATCGAGAGGAACGG-CGCGGCCATGTGCGGCGGCGCAACATTTCTTT-GAGA------TTTCTTTGCCC
TGTC---------------------TAGGGTTCTGGTGGGAAGGAGG-------GATCTTTC-TTTCTCT------GTTT
---------GT--TCTTTGTACCGAAAA-TC-TTAGCCTA-GCATGG---CCTGATACCATTGATAGATT--CTCTC--G
ATCGG-GGTAGGCTAG--AGACTCCGGTAGACCTACCTTCTGGCTGGGCTTGCGAGCTCGAACCAACAGCCATGGTGATG
TTGTGGTG-GCCGTGATGGCAGTGCGACGGCGGCGGTGGT----GTGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTCGGTGGGGTTTGTCGCAGCGA-TTAACCTCGTGACTCGTG-CCGCGG
TACCCACCTCTGTTTGTATA-GCGCGGGTCACAGGGGCCCACCAACCATATGAGGGTTGGGCGCCCCCGATCAAGGCGCA
GAT--CTAAGGGCCC-----------------------------------------------------------------
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---
>chr3D_378
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---------------------------------------------------------------GAGCGCGCCGCCGTCAA
GCGGTGCGGTGGTGGTGCC----CTTTTGCCCCCTTG--GGGAGGCTGTGTTCTTCTTCCCCGC-ACCTCGGCTTGCCGA
TGCGTGTGGGGATCGAGAGGAACGG-CGCGGCCTTG--CGGCGGCGC--------------GA------TTTCTTTGCCC
TTTGCCCCTATTGTTCTTTTAGGGTTAGGGTTCTTTGGGGGGGGGAT-------CTCTTTTC-TTTTTCT------TTTT
CTGTTGTTGTT--TCTTTGTACCGAAATCAA-ACTAGCCCGATCTGG----CTGATACCATTGATAGTT---CTTTA--G
ATCGG-AGTAGGCTAG--TAGATCCGGTGAACCTACCTTGTCCAGCAGCAGATGAACTCGAGCTGGAGGCCATTGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTGGGCGA----GGCGATGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTCGTGAATAGCA-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
AGT--CAAGGGCCC------------------------------------------------------------------
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>chr2D_378
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---------------------------------------------------------------GAGCGCGTCGCCGTCAA
GCGGTGCATTTGTGGTGCC----CTTT-GCCCCTTTC--GGGGTA--ATGTTCTTCGTCCCGGA-TCCTCGGCGTGCCGA
TGCGATTCGGGATCGAGAGGAACGG-CGCGGCCGGA-GCGGCGGCACAACTTTTCTTT-GAGA------TGTCTTTGCCC
TCTTTTTGCTT-------------TTAGGGTTCTTGGGGAAGGGGAT-------TTC----C-T-------TTTCTTTTT
CTGTTTTTGTT--TCTTTGTACCGAAAT-CA-ACTAGCCCGATCTGG----CTGATACCATTGATTGAA---CT--G--G
ATTGG-AGTAGGCTAG--TAGATCCGGTGAACCCACCTTCTCCGGCAGTGGATGAACTCGAGCCGGAGGCCATCGTGGTG
CTGGGGCGCACGGCGATGGCGGAGAGTGGGCGA----GGTGGTGGAGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-ATTGTAGGTGGGGATTGTGGCAGCGA-TTAACCTCGTAAGTCGTG-CCCCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACCAACCATGGTTTGGTTGGGCGCCCCCGA-CAGGGCGCG
AGT--CAAGGGCCC------------------------------------------------------------------
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>chr5A_427
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-----------------------------------------GGTA----GTTCTTCGTCCGA--CGCCTCGGCTTGCCGA
TGCGCGTCCGGATCGAGAGGAACAGGCGCGGCCATGTGCGGCGGCACTACTTTT-TCCGTTGAGGATTCATTCTTTGCCC
TGTG---------------------TAGGATTCTTGGTGGGAGGGGG-------TT-----C-T-------TTTCTTTCT
CTGGTTTCTTT--TCTTTGTACCGAAAA-TC-TTAGCCTATGCATGG---CCTGATACCATTGATAGAC---CTTAG--G
ATCGGGGGTAGGCTAGATC-AATCCGGTAG-CCTACCTTCTGCCTTGCCTTGCGAGCTTGAACCAGCAGCCATGGTGATG
TTGTGGCG-GTTGTGATGGCAGTGAGATGGCGGCAGTGGT----GTGCTTCCCGTGAGCA--------------------
--CCGCGCTAACCCTAGATCGGTAGGG-AGTGTTGGTGGGGATTATGGCAGCGA-TTAACCTCGTCTAACGTG-CCTCGG
CCCCCACCTCTGTTTATATA-GCGCGGGTCACAGGGGCCCACTAACCATGGTTTGGTTGGGCGCCCCCGATCAGGGCGCG
AGT--TAAGGGCCCATTCGA------------------------------------------------------------
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>chr5A_974
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--------------------------------------------------------CGCTTCGCGGCGCTCGATGCCAAC
CACGACGGTCTCCTCTCCTACACCGAGATGGCCGGGGAGATCATGAGCCTCCGGGTTCTCGAGAAGCACTTCGGTGTGGA
CGAGGCCGGCGCCGTTGGTCCCGACGAGCTCGCGAAGCTCTACCGCGGTCTGTTCGCGCGCTTTGACCGCGACGGAGACG
GCGCGGTGGACCGCGACGAGTTCCGGGCAGAGATGAAGGAGGTCATGCTCGCCGTGGCCAACGGGCTCGGCTTCATGCCG
GTGCAGATGGTGGTCGAGGAGGGGAGCTTTCTCAAGGTGGCCGTGGACCGGGAGCTGGCCAGAGCTGCCTGACCGATTTT
GTTTGTACTACTACGTGTGTATGCGAGTAAGGATAATGTTTTTGTTTTATCTTCAAAACGAGAAGTGAGTACTAATGCTG
AAGCCTCTATGGCATTCAGCTATATCTACGTGATTGTGTATTTCATAGACGAATTTGTCCCATTAATAAGTTAATTTGTC
GATTAATCCCTACTAATAGGGCCACCGATAGCCAATAAAATAGATAAATCATCCGATTAATTGATAAATTAAAGATTAAT
TTATCGATTAGCTTATTAATCTTCTGCTCGCCCGCCAGCCCAGAAGCTAGCAATTAATGATTTCCTCACCAATGGGTTTA
TGTACTATTTTCATACGAGTTAAAGGTCGGGCATATGATAAAATAACGACTGCTCAATAATTAGTTAGAACCATGACATT
TGTTCCAAAGGGCATCTCCAATGTTCATTCTCAAATCGTCTGCATTTTATTGGGACCTATTTTACCATTTAATGCGGTAT
TTCATCTATCTGCCAACCGGTATGTCCGCTTTTCTACAAAACGAGGATCATGAGGCTTAGTGAACATTCGGACCGTTCCC
ACGTCCGCGACAGACAACTCGAACCCACCCAAAACTCTCTCCCTTGCCCGCGCCCCTTCTAAAGCGAAGCAGTTGCCATG
TAGCGCCGCATACATGCCGACACAGAGCGGACGCGACTTCTCACTGGTGTCGGCACTGAAGCGGTGTGTCCACCGAGAGT
GCCGCCCATGCCGCATCCCGGTGCCCGCACCTATTCAATACCGAATAGATGTGACTAGACGGGATGGATATTTGCCGCAT
TTAAATGGGTTGCCCGCCATTCGCCGTCCGTCATTAAACATACACGCCAGCGGAGAAACCAACTTCGGCATGCGCATTGA
CACACCGCGCCGCTTGGCATGGTTGGCGTCCGCTATTTAAATGAGGCCTCGCCCAGCACAAAGCATACTACACCTAGTCT
TGATTCACATCCTCCACTGTGCACCACTTCTGCCATGACCACATGGTCTAGCGCGTTATGGGAGAGCCTTTCCACGAAGT
AGAAGCACAAGCTGGCTACCCTTGCGGGCAACTGGCAGAGCCATTGTTTGAGGCGGACAGAGGCTGGCATGTGGGCCGGC
TCCCCGAAGTTCTTCGACGACGACCCGGCGATGGAAATGGCCTCCGACGATGACTCGGCGCCCCTGCGTGCGCCGTTCCA
CACCGACTTGACCATGGAGCAAGCGCATGCACATTTCATCGCCGCCATGGCGAAGGAGCAGCTGGAATCATAACTAGTGT
CGGTGTTCCGGCCGGCGTAACCGGATCCGCTGCCTCGACAGAGAGCTCACCAAGATTGGCAAGGAATGGCGCTAAGCCAC
ATCTCCACCAATGTTGGCTGGGCCAAGGCCGTTGCCGGCAGGGCACCACGGCCGGGGTCGGCAACGGCTCCTCCGCGAGC
GCCAGGCCGCGACCGGGCAAGGCTTTCACGGCCCGCGTCCTTCCATAGCTAGAAGAACGACGATGGTAACACGAACGACG
ACGACGGAACGACTGCCAGGGCAGCCAAGTGTACGATGTTGTTCGCCCGCTACAAGTTAGACACCTAGGGTGTTTTTCTT
TATTTTTTGTTATACGAGTTTTTATGTAAATTATTATGTCTGAACTTTGCTGAAATCCGTCATGTTTGATAAAAAAATTC
AAGTTCGTGTCACCATCGTACGGAGCTGTTCAAGAGGATTCGCCCATCACGTGTTTGACGAAATGTCGGGGCGAACATGT
CAAAACATGCGCCCGTTCTTGTTGGACGCATCGGTCGACCCAAATCAAAAGAAAAACACGCACAGGCGGACGAGTGATCC
AAACAGATAAAAAACAAACAAAATGGGTGTCCGTTTGGTTAGAGTTGCTCTAACACTCGCAGGATCCAGATCCCACAGCT
GCAGCAAGCTTGTAAACCGTGTGAGGACAAGAAACAGGGGCCTTGAGCTAGGGGACGACTCGTAGTCGGCCGTCGTTACT
CTTTTGACCGATGACCGATCAGTGTCAATGTCATGGCCTTTGCTTGGAGGGCTTTTCCATGTCGTCGCACCTACGCATAT
TCCGCGCGTATTAAAATTCTTGGGCACGAGACGCCGGCGTTGCTGTCAAACACCCTTCTGCGACGCGGCCGACACCAGCC
AACACCACACGATTCTGTGGGGAAGACAAAATAGTATACTACTTTGGAGAGACTTTGCTTACATCTGAAGCGAGTCTCGT
CAACCTCGGCGCATCCCACAGCGATATTGCCGACCACCGTAAACCAAATGAAGCATCGCCAGCTATAAATACCGGCCAAG
GGCCAACACCTCTTCCCCACGTCCACAAACCGGCCGAGATCACAACACACAACACGAGAAACTCCCGAAACTCCAACATC
AGTTGCAGCAGAGAGATTTCTTTTCAAGATGAGCGTGGAGATCCTGGACGGGAAGACGGTGCAGAGCTTCGTGGAGGACG
AGGGCGCCTTCAACGCCTCCGTCGACGGCCGCTTCGCGGCGCTCGACGCCAACCACGACGGCCTGCTCTCCTACGCCGAG
ATGGCCGGGGAGCTCATGAGCCTCCGGGTCCTGGAGAAGCACTTCGGCGTCGACGAGGCCGGCGCCCTGGGGCCCGACGA
GCTCGCGGGGCTCTACCGCGGCCTGTTCGCGCGCTTCGACCACGACGGCAACGGCACCGTGGACCGCGACGAGTTCAGGG
CTGAGATGAAGGAGGTCATGCTCGCCGTGGCCAGCGGGCTCGGGTTCGTGCCGGTGCAGATGGTGGTCGAGGAGGGAAGC
TTTCTCAAGGTGGCCGTGGACAGGGAGCTGGCCAGAGCTGACTGACCGATTTTTGCTTCTGCTTGTACGAGCAC--GTGT
ATGCTGCAGAGTAGTAGTATGAACCAGGCATCGTTAAGTCAGT-------------------------------------
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---
>SNPs
S-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------S----------------------SS
------------------------S-S---------------------------S-------------------------
---S---S---------------SS------------S----S-------------------------------------
--------------------------------------------------------------------------------
--------------------------SS---S-----S--S----------------S----------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-------------------------------------------------S---S---
-----------------------------------S--------------------------------------------
------------------------S--------------------------S----------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S-----S-----S
--------S--S----S---------S------------S-----------S-S--S--S--------------------
-----------S---------S--------------------------S--------S----------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------S-----------S------S---
-S-------------------------------S--------S----S----------------S--S-----S--S---
--------------S------------------------SSS----------------S----------SSS--SS----
-----------S----------S----------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_23
---GCAGGAAGAGAGGGGTTCAC---------------------------------------------------------
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---
>reverse_4743
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----------------------TCGAGACGTGAAGGTTGTGG--------------------------------------
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---
