>input_sequence_76853
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---------ATGGCCATGCCGCCACCACCGCCCGGGGGCATGCCTCCGA---------TGGGCCCGATGGGGCCGATGGG
GCCGATGGGGCCGATGCCTCCGATGGGGCCGATGGGTCCGCCGCCGGCAGCCGACATGCCTGGGATGGGGACGATGCCAG
TGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTCTTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGT
ATGTACGTCCTCTGCCTCCTCATCGTGCTCACGCTCGCCGCGCTCGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTC
CAGCTGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTCCACGCGGTGAAGATGGGGCTGGCGTACCTGGTGATGCTGG
CTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCCGGACACGCGATCGGGTTCCTCCTCGCGCGGAGCGCC
GTGTTCCGCCAAACGACTCCGGGTGACGCGCCACAAAACGGTGCTCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAA--
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>chr2D_1_TraesCS2D01G206800
AAAAATTAGGAATTTTGGTTCTTTCAAAAGATGGAAAAATTTCGAAACTTCCAGATTTTTTACAACCGAAATTTTCAAAA
TGAAAAATCGGATTCAAAAGATCTTAGCTTCAAAACATACAACAATTTTGACTGTATTTGTACACAACCCAGTTGCAGAT
CAACTGGTAAGCCCGCCCATCCTTCATTCAGGAGGTCCCCTGATTGAGCCACCACCCACACACCTCTGTCATAATTTTTG
TGTGG------------AGAGGGTGTTCGACAAGATGCTGGTTACAGTGGACGATTCTGAAAACTGACGTAGCAGCACCC
TTGTGCCGTGATTCGTGCCAGGATATCGAACGACAATCAACACGTTTGCTGCAAGAACGTTATCATTTCCGCAGTCTAAC
GTACTGGGAGTAC---------------------AATATTTGAATGCACATGGTTCAGAATACAACTAGTGATAAAATAC
CCTGTCCAAAAATTTCCAAGATAATAGTAATACCACGTCTGAGAAGTAGC-TTTAGTGCCAATTGAAATCTAGCGCTCAA
ACTTGGAAATCCATCCTAATAATTGTTTTTTAGTTGGAACTCTTTTTTTA--ATGGAAAGTTGGAACTCTTGAAATATAC
TACATGGCATCAGTTCGATAATACTCAGAGTCCTTTTTTTAGCGAGTTCTCCTAGATAATACTCACAATCCGTAGGTCAA
TTTAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGTT-GGAAGAGACAGCTACGCGGGCAGCACCAGCACGC-A
AGACATCCTCTATCTGCTATCCCAAAGCTCACGGTATCTAATGCCCCTATCGCTATCATCTTTTCCTTGTTCTTGTTCCT
ATTTTCCTTCTTGTTTGATAGA----TATGCCTTTATTATGTCTTTCCATTCTCTTGTAGAATTCCTCGCTTTCCAATAG
ACAAGAGTCACTGGGCGAGTTCTTCTTACCTATACTGCCCACTAACTCGTCGACCCGACATTTCCGCTCAGCTCACCGGA
-AA------ATGGCCATGCCGCCACCACCGCCCGGGGGCATGCCTCCGA---------TGGGCCCGATGGGGCCGATGGG
GCCGATGGGGCCGATGCCTCCGATGGGGCCGATGGGTCCGCCGCCGGCAGCCGACATGCCTGGGATGGGGACGATGCCAG
TGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTCTTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGT
ATGTACGTCCTCTGCCTCCTCATCGTGCTCACGCTCGCCGCGCTCGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTC
CAGCTGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTCCACGCGGTGAAGATGGGGCTGGCGTACCTGGTGATGCTGG
CTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCCGGACACGCGATCGGGTTCCTCCTCGCGCGGAGCGCC
GTGTTCCGCCAAACGACTCCGGGTGACGCGCCACAAAACGGTGCTCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAAGC
-TGACATGATTATATGCTGGAAATTGTTTTATTACGACCCGGATGGATACTGAATATGAAAAGCATATGTACGGAGTACG
TTCAAGAGAATTACAAGATTATTATTCTATTACTCCTCCTCCTTGGTTCGGCATAACTCCTCAAGAGTTATAAGAAACGC
GAACCTGACGACGGAATTCTCAAATTTAAATTTGCAAATGAATTGGACCCCACGCGAAGGTCTCTCTCCCTCGTGATTGT
CGAGGATGAGGGTGAAGGGGCAGCGTGCACGCATGATTTCGAGAAACCCGGTGTTGAGGTCTGCCTTCCGGAACAAGAGA
CAGAGAGCACCGCCAACTTTCTAAAAATGCATTGACAACTGCGAGATCAACATATGCATATATGCAACTTATGCATTATC
TTGTGGAGCACATGT-GGGTTCACACTGGAAATCAGTAAGCTTTGCTTTTAATTTATCAATTAAGCACTATGAACAATAT
CTATGTTTGAACTATGTTTGGTTTTTTGATTATTAAGTACAAACAATTTGTATTCATGTGCACAAAACTATGTTTGGCCA
AAATGATAGACATGCATGTGTTTGCATGGATTTAATGTCTTAGAAAATAAAAGCTGTGATTGCCAATGACAAGATTTGAT
ACCCGTTCAGTCACTGTCCGCCGGCGCATCC---GCTGACGTATAGAGGCTCGAATTAGCTCTCCGTGGTTGTAGATGCT
CTTTTGTTTCTGGTTGGGCACCCGATTCTGTTCTTGGTAAGCAGGCACCGGGACGTATAGTATGTTGAATATTGCTCCAC
TGCGAGTTAAAGTTAGTACAATTGGGTCATCTATTTTGGAACGGAGGGAGTACATCTAGACTTACAAACTGCATCATAGT
TTTGTCGAGCTCCTATGCTTCTCTGCTGCTTTTCAGAGTTCATCGAATTTTCCACATGATG----TATAATATAATAAGC
ATTGTTACAAATTCGCTGATTTAACATGGTCGACAGCCAGAGCACAA
>chr2B_1
AAAAAGAAGGAATTTTGCATCCTTCAAAAGATGGAAAACTTTCGAAACTTCCAGATTTTTT-CAACCGAAATTTTCAAAA
TAAAAAATTGGATTCAAAACATCTTAGCTTCAAAACATACAACAAATTTGATTGTATTTTTTCACAACCCAGTTGTAGAT
CAACTGGTAAGCCGCCCC-TCCTTCATTCAGGAGGTCACCGGATTGAGCCACCACCCATGCACCTTTGGCATAATTTTTG
TGTGGGGAGAATAAAGGAGAGGATGTTCTACAAGAAGCTGGTTACAGCGAACAATTCTGAAAACTGACATAGCAGCAGCC
TTGCGCTGCGATTCGTGCTTGGATATTGAATGACAATCAACATGTTTGCTGCGAGAACACTATCATTTCCGTAGTCTAAA
GTACAATATTAGAATACTTTTTTGTGCGGGAAATAATATTAGAATACACATGGTTCAAAATACAACTAGTGATAAAATAC
TCTGTCCAAAAATTCCCAAGATAATAGTAATATCATGTCTGAGAAGTAGCGTC-AGTGCCAATTGAAATATAGCGCTCAA
ACTTGGAAATCCACCCTAATAATTGGTTTTTAGTTGGAACTCATTTTTTGCGATGGAAAGTTGGAACTCTTGAA--ATAC
TACATGGCATCAGTTCGATAATACTCAGTCCTTT--------------------------------AGTCCGTAGGTCAA
TATAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGTT-GGAAGAGACAGCTACACCAGCAGCACCAGCACACTA
AGACATCCTCTATCTGCTATCCCAATGCTCACGGTATCTAATGCCCCTATCGCTATCATCTTTTCCTTGTTCTTGTTCCT
ATTTTCTTTCTTGTTAGATAGA----TATGCCTTTATTATGTCTTTCCATTCTCTTGTAGAATTCCTCGCTTTCCAATAG
ACAAGAGTCACTGGGCGAGTTCTTCTTAACTATACTGCCCACTAACTCGTCGACCCGACATTTCTGCTCAACTCACCGGG
GAA------ATGGCCATGCCGCCACCGCCGCCCACGGGCATGCCTCCGATGGGGCCAATGGGGCCGATGGCTCCGATGGC
TCCGATGGGACCGATGGGA---------CCGATGGGTCCGCCGCCGGCAGCCGACATGCCTGGGATGGGGACGATGCCAG
TGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTCTTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGT
ATGTACGTCCTCTGCCTCCTCATCGTGCTCGCGCTCGCCGCGCTCGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTC
CAGCCGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTGCACGCGGTGAAGATGGCGCTGGCGTACCTGGTGATGCTGG
CTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCCGGACACGCAATCGGGTTCCTCCTCGCGCGGAGCGCC
GTGTTCCGCCAAGCGACTCCGGGTGACGCGCCCCAGAACGGTGCTCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAAGT
TTGACATGATTAGATGCTGGAAATTGTTTTATTAAAACCCGGATGGATACTGAATATGAAAAGCACATGTATGGAGTACA
TTCAAGAGAATTAAAAGATTA--ATTCTATTACTCCTCGTCCTTGGTTCGACATAACTCCTCAAGAGTTATAAGAAACGC
GAACCTAACGATGGAATTCTCAGATTTAAATTTTCAAATGAATTAGTCCCCACGCGAAGGCCTCT-TCCCTCATGATTGT
TGAGGATGAGGGTGAAGGGGCAGCGTGCACGCATGATTTCGAGAAACCCGATGTTCAGGTCCGCCTTCCAGAACAAGAGG
CAGAGAGCATTGCCAACTTTCTGAAAATGCATCAACAACTGCAAGATCAACAGGTGCATATATGCAACTTATGCATTATC
TTGTGGAGTACATATGGGGTTCACACTGAAAATTAGTAAAGTTTGCTTTTATTTTATCAATTATGCACTATGAACAATAT
CTATGTTTGAACTATGTTTAAATTTTGCATTATTAAGTATGAACAATTTGTATTCGTGTGTGTAAAACTATGTTTGGCCA
AAATGGTCGACGTGCATATGTTTGCATGGATTTGATGTCTTAAAAATAGAAACG-GTGATTGCAAATGACAAGATTTGAT
ACCCGTTCAGCCATTATCCGCATACGCATCCGCTGCTGACGTATAGAGGCTCAGATTAGCACTCCGTGGTTGTAGATGCT
CTTTTGTTTCTGGTTGGGCACCCGATTCTATTCTTGGTAAGCAGACACCAGGTCATACAGTATGTTGAATATTGCTCCAC
TGCGAGTTACATCTAGTATATAG--------------------------------------TTACACACTGTATCATAGA
TTCGTGGAGCTCCTATGCTTCTCTGCTGCTTTTCAGAGTTCATCGAATTTTCCACATGACGTATATATAACATAATAAAC
ACTGTTACAAAATCGCTGATTTAACACGGTCGACAGCCAGAGCACAA
>chr2A_469
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---------------------TAGTAGTAATACCATGTCTGAAAAGTAGCTTTTAGTGCCAATTGAAATCTAGCGCTCAA
ACTTGGAAATCCATCCTAATAATTGTTTTTTAGTTGGAACTCTTTTTTTTT-ATGGAAAGTTGGAACTATTGAA--ATAC
---ATGGCACCAGTTCGATAATACTCGTAGTCCTTTTGTTTTTTGCGAGA---AGATAAGACTCACAGTCCGTAGGTCAA
TATAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGTTTGGAAGAGACAGCTACACCGGCAGCAACCAGG----A
AGACATCCTCTATCTGCTATCCCAAAGCTCACGGTATCTAATGCCCCTATCGCTATTATCTCTTCCTTGTTCTTGTTCCT
ATTTTCTTTCTTGTTAGATAGATATGTATGCCTTTATTATGTCTTTCCATTCTCTGGTAGAATTCCTCGCTTTCCAATAG
ACAAGAGTCACTGGGCGAGTTCTTTTTAATTATACTGCCCACCAACTCGTCGACCCGACATTTCTGCTCAACTCACCGGA
-AAATGGCCATGCCGATGCCGCCACCGCCGCCCGCAGGCATGCCTCCG---------ATGGGGCCGATGGGTCCGATGGG
GCCGATGGGGCCGATGGGA---------CCGATGGGTCCGCCGCCGGCAGCCGACATGGCTGGGATGGGGACGATGCCAG
TGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTCTTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGT
ATGTACGTCCTCTGCCTCTTCATCGTCCTCACGCTCGCCGCGCTCGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTC
CAGCCGCCGGCCGGCCGTGGTGCTGGCGCTCACGGGGCTCCACGCGGTGAAGATGGCGCTGGCCTACCTGGTGATGCTGG
CTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCTGCCGTCGCCGGACACGCGATCGGGTTCCTCCTCGCGCGGAGCGCC
GTGTTCCGCCAAGCGACTCCGGGTGACGCGCCACAGAACGGTGCTCTCGTTCCCTCGGAGGCTGAGCCCAAACCTTAAGC
-TGACATGATTAGATGCTGGAAATTGTTTTATTAAGACCCGGATGGATACTGAATATGGGAAGTATATGTACGGAGTACA
TTCTAGAAAATAG-------ATTATTCTAGTACTCCTCCTCCTTGGTTCGACATAACT---------TTATAAAAAACAC
AACCT----GACGGAATTCTCAAATTTAATTTTTCAAACGAATTAGACCCCACATGGAGG--TCTCTCCCTCATGATTGA
CAAGGATGAGGGTGAAGGGGCAACGCACACACATGATTTCGAAAAGTCCGGTGTTCTGATCCGCCTCCCGGAACAAGAGG
CAGAGAGC----------TTCTGGAGATGCACCGACAACCGCGAGATCAA------------------------------
-----------------------------------------------------------------------------TAT
ATATGTTTGAACTATGTTTAAAATTTGTATTATTAAGTGCAAACAATTTGTATTCGTGTGCACAAAACTATGTTTGGCCA
AAATGATCGACGCAAATGTCTT--------------------GAAAATAGGAGCTGTGGTTGCAAATAACAAGATTTGAT
GCCCGTT--------GTCCGCGGGCGCGTCT---GCAGATATTATGT--CTCGGATTAGCTACCTATGGTTGTAGATGCT
TTTCTGTTTCTAATTGGGCACCAGATTCTATTCTTGATAAGCAGGCACCAGGTCGTACAATATGTTGAATATTGCTCCAG
TGCGAGTTA-----------------------------------------------------------------------
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>SNPs
-----SS----------SS--S----------------S----------------------S------------------
-S------S----------S-------------------------S-----S-------S-S-------------S----
-------------SS---S------------------S--S-----------------SS-----S--S-----------
----------------------S-----S------S-----------S-S--S---------------S--------S--
---S--S-S---------SS------S---S-----------S---------S-----SS-----------S-------S
----SSSSSSSSS---------------------------S----S-----------S----------------------
S-------------S--------------------S--------------------------------------------
-------------------------------------------------S------------------------SS----
-------------------------------------S--SSSSSSSSSSSSS------S-------S------------
-S---------------------------------------------------------S-S--------------S---
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------S--------S----------------------------------------------------------------
----------------------------S-----------------------------------S-----S---------
--------------------------S-------S---------------------------S--------S--------
----------------SSSSSSSSSSSS----------------------------------------------------
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----S---------------------------------------------------S-----------------------
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------------S----------------------S--------------------------------------------
------------S---------------------S--------------------------------------------S
-------------S------------------------------------S-----------------------------
------S--------------------------S----------S---------------S-----------S-------
-------------------------------------------------------S-----S-----------------S
---------SS-----------S---------S-------------------SS--------------------------
--------S----S--------------S----S-----SS----------S-----------S----------------
-------------------SSS----SS---------------------------S------------------------
-------S---S---------------------S-----------------------------S----------------
----------S--S-------S-------------------------------S--------------------------
-----------------------------S-------------------S--S----S----------------------
---------S-SS-----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S-------S
--S--S-----------------------------------------------------S----------S-------S-
-S---------S--------------S--------------------
>forward_269
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---------TTGTGTGGAGAGGGTGTTCG---------------------------------------------------
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>reverse_1556
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-----------------------------------AAACGGTGCTCTCATTCCCT-------------------------
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>forward_782
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------------------------------------------TTGGAAGAGACAGCTACGCG------------------
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>reverse_2350
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-----------------------------GTTCTTGGTAAGCAGGCACC-------------------------------
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