>input_sequence_76848
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--------------------------------------------------------------------------ATGAAG
GTAATAAATAGCTTCTTCAGCTTCTGCCTGATTTTGAGC----ACTTGCTAGCTCTTGAGCTGAACCTTCTTCTTGTTGT
T---------GCAGCAAAAGATTGTGATCAAGGTGAGCATGTCGTGCGACAAGAGCCGGTCGAAAGCCATGACGATGGCC
GCGAGAGCGAACGGTATGCATGCATGCATGC----GCTAATTCTTCACGTACACGTATGTTTACCCTTGAGATTTTGTGC
GTCAGCGACGCTAACATGG-CCGCAAGCGTTGT----------GGTGCAGGGGTGAGCTCCGTGGGGATAACCGGCGACA
GCAAGGACATGCTGGAGGTGGTAGGCAACGGCGTCGACCCGGTGTGCCTCGTCGGCTGCCTCCGCAAGAAGTACCACGAC
GTTCACATCGTCAAGGTGGAGGAAGTGAAGGACGAC---AAGAAGGATGAGAAGAAGGAGGACCCGCCGCCGTACTGGTA
CCACGGCTACCACCACCCATATGGGCCATACCCGCCGCCCATGGTCGTGTGCGACGAGCCCACCACCCCCTGCGCCATCA
TGTAA---------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G349100
ACTTCAACCTTCGGTTTCTCTCATGTCTGATCGTCGGTAT-GCTCATGTTGTTTGTGATGCTACCACTATGACTGAGGGG
GGGTGT--------------------------------------------------------------------------
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-----------------------------------------------TAGAGTATA-----TTGACATATTTATATGTAT
TTTATGGGAATATATTTGTAATCGGACTACCATAATTATTTATCCATATTCATTCTGAGTAATATCTGACCACTGTCAAC
AAGTCTTCCGTATATAAACAAAAAAAATGACCTCTGTCAACAAGTCTTTCGTAGCAAGACCCGGA----GTGGACTAGTT
GTGTTCTCACGATATATAGCCACCGAAATCTTCAAGCTTATATATTTCAATGTTCTGCCAGGCACACTTCGACTATTCTA
GGTTTGACAGAGTCCAGCAAGGAGGGGCACCGTGAAATCCTTTGTCGGTAGGGTTGCGCCCATACGACATACTGTATCAC
TTAGTTGCTTGCCTCGTTCTCACACTTAATATGGTTTTGCTTAGGCAGTTATT-AGCACTGAGCACTG--------TCGA
TGGAACAACAGATCTCGGCCCGTTCTACGTACGTACGTGCATCCGCAGAGCCGCGGCTTCGCAGAAGT-----GCGCCGT
GGCCAACAGCCCAACAGGCAATTACTACAATTGATGGCTCGCTCA------GACATATCATTCGAGGAGTCATTTTCTAA
TGTATTCTGTCCATGACCGGAAAAATCAACCGAGAGAGCTCGTGCTCAGGACGCGTTTACTTACTTTTGGATCCTTGTTG
TTCACTAACCGGAAGCTTAGCTGCTGCCGCTGCTGGGAATCTTCTTACAACAAAGCTGGTGGCTTAGATTGGTCTCCAGT
CTTCACTAGTACCAGGTCTACTATCTCCCTCA-------------------------------------------CCCGG
ACCCCACGTAACTGCCCTGTACTATACTCTATATAACAAACAGCAGTGGCCATTGCTGTGCTCTCCACAGACATCATAAG
ACGCCTCGATCGAACACAAGCCTTTCCAAATATTCTCTTTGATCGGCATCTAATCAACAAACCAGCGCCGCCCAATGAAG
GTAATAAATAGCTTCTTCAGCTTCTGCCTGATTTTGAGC----ACTTGCTAGCTCTTGAGCTGAACCTTCTTCTTGTTGT
T---------GCAGCAAAAGATTGTGATCAAGGTGAGCATGTCGTGCGACAAGAGCCGGTCGAAAGCCATGACGATGGCC
GCGAGAGCGAACGGTATGCATGCATGCATGC----GCTAATTCTTCACGTACACGTATGTTTACCCTTGAGATTTTGTGC
GTCAGCGACGCTAACATGG-CCGCAAGCGTTGT----------GGTGCAGGGGTGAGCTCCGTGGGGATAACCGGCGACA
GCAAGGACATGCTGGAGGTGGTAGGCAACGGCGTCGACCCGGTGTGCCTCGTCGGCTGCCTCCGCAAGAAGTACCACGAC
GTTCACATCGTCAAGGTGGAGGAAGTGAAGGACGAC---AAGAAGGATGAGAAGAAGGAGGACCCGCCGCCGTACTGGTA
CCACGGCTACCACCACCCATATGGGCCATACCCGCCGCCCATGGTCGTGTGCGACGAGCCCACCACCCCCTGCGCCATCA
TGTAATTGCCAAATAACCAGATGCCGAGTTCGCCATATGGAGAGGCCGCAAGTTTATCCACCATTTCGGACTATTGGTAA
ATTGGAAGAAAGAAAGAGACATATGTATAC-----ATATACGTCGTCCTTGGTCTCCAGTTAGATAGAGTAATAGTATGT
CGAGAAAAAGCAATCACGCATACCCCAGATCTGAATTCCTCGCCT-CTTCGCGATGTTCGTACTACGTGCTGCCTCTCTG
ATCTGGGCTTCCGAATGTGCCAA-----TCTGTAATGA-------TGG--TCACTGGAATGGTTTGCGTCTGAAGACGTT
GGAGTCACACAGCGCGCGCGCATGTAACGGTCAATGCGTCAAACGGCAAGAAAAATGTAAAACGTCACACCACTATGCCC
TCGGCGCCAGGTCGTTGCGTCTTATGTGGTCTCCCACTCTAGCATTTTCGATCTTTTTTCTAGAGAAAATTCATAAACTT
TTAGCATCTACAGCCAGTCCTGGCAAATCCGGCTCCCAAAACGTCCGCGGACGCGACCAAGATTGACCGGTCATACCTCA
TACTTAGTGCTATGCATCCGAGACTCTCATATTTCATCCTCTAGATCCATACTTGGTGCT-----ATGCGCATGTGTCGG
AAGGGTTTTTTTT----GACCGGTTATTGGCCGGACAGTCCGCCCGGACGTTTGATGGGGGTTTGAAGAGCCTGGCTATA
GATGCTCTTAGAGTAAGTCTAACAGACGCGTCATATTTATATCCTCTTATATCATTTTGGAGGTGTTTGCAATTTTGTGA
AAGCTATGGAGGCCATGTGCCAACTTAAAGTCGTCATAATCCAAGCTCTATATTTTGCGGACTCGCATGTCTATATTTAT
GTTCTTTTTCAAATAAAGAAATTGTAAAAAAAAA---------------------TCCACCAACGAAACTTGCTCTCAAC
ATCACATAATTACCAAAATTGAAATAACCTAAAACATAAATAGAAATTGAACAACGGTTTTAGTTCAGCCTACTCTTCCA
TTTGAAAGTGACCTC
>chr2A_3
TTG--AACCTTCGGTTTCTCTCATGTCTGATCGTTGGCGACGCTCATGTTGTTTGTGATGCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGAGTATA-----TTGGCATATTTATATGTAT
TTTGTGGGAATATATTTGTAATCAGACTACCATAA--------CCATATTCATTCTGAGTAATATTTGACCGCTGTCAAC
AAGTCTTCTGTATATAAACAAAAAAA-TGACCTCTGTCAACAAGTCTTCAGTAGCAAGACCCGATCGACGTCGACTACTT
GTGTTATCACGATATATAACCACTGAAATCTTCAAGCT--TATATTTCAATGTTCTGCCAGGTACACATGGACTATTCTA
GGTTTGACAGAGTCCAGCAAGGAGGGGCACCGTGAAATCCTTTGTCGGTAGGGTTGCGCCCATACGACATA-----TCAC
TGAGTTGCTTGCCTAGTTCTCACACTTAATATGGTTTTGCTTAGGCAGTTATTTACCACTGGGCACTGACAGATTTTCGA
CGGAACAACAGATATCGGCCCGTTCTACGTAAGTA----CATCCGCAGAGCCGCGGCTTCGCAGAAGGGAAGCGCACCGT
GGCCAACAGGCAGT-----------TACAATTGATGGCTCGCTCA------GACATATCATTGGAGGAGTCATTTTCTAA
TGTATCCCGTCCATGACCGGAAAAATCAACCGAGAGAGCTCGTGCTCAGGACGCGTTTACTTACTTTTGGATCCTTGTTG
TTCACTAACCGTGAGCTTGGCCGCTGCCGCTGCCGGGAATCTTCTTACAACAAAGCTGGTTGCTTAGATCAGTCTCCAGT
CTTCACTAGTGCCAGGTCTACTATCCCACGTAGTTGGTCTTCTTACAACAAAGCTAGTGGCTAGTGGCTTGGAGTCCCCG
ACCCCACGTAACTGCCCTGTA-------CTATATAACAAACAGCAGTGGCCATTGCTGTGCTCTCCACAGACATCATAAG
ACGCCTCGATCGAACACAAGC-TTTCCAAATATTCTCCTTGGCCGGCATCTAAACAACAAACCAGCGGCACCCAATGAAG
G---TAAATAGCTTCTTCAGCTTCTGCCTGATTTTGAGCTCTTACTAGCTAGCTCTTGAGCTGAACCTTGCTGTTGTTGT
CGTCGTCGTCGCAGCAAAAGATTGTGATCAAGGTGAGCATGTCGTGCGACAAGAGCCGGTCGAAAGCCATGACGATGGTC
GCCAGAGCGAACGGTATGCATGCATGCATGCATGCGCTAGTCCTTCACGTACACGCATGTTCTCCCTTGAGATTTGTACT
GGT-GCGATGCTAACATGG-CCGCAAGCGTTC-------TCTGGGTGCAGGGGTGAGCTCGGTGGGGATAACCGGCGACA
GCAAGGACATGCTGGAGGTGGTCGGCAACGGCGTCGACCCGGTGTGCCTCGTCGGCTGCCTCCGCAAGAAGTACCACGAC
GTTCACCTCGTCAAGGTGGAGGAAGTGAAGGACGACAAGAAGAAGGATGAGAAGAAGGAGGACCCGCCGCCGTACTGGTG
GTGCCACGGCT---ACCCATATGGGCCATACCCGCCGCCCATGGTCGTGTGCGACGAGCCCACCACCCCCTGCGCCATCA
TGTAATTGCCAAATAGCCAGATGCCGAGTTCGCCATATGGAGAGGCCGCAAGTTTATCCACCGTTTCGGACTATTGGTAA
ATTGGAAGAAATAAAGAGACGTACTGTATGTATATATATACGTCGTTCTTGGTCTCCAGTTAGATAGAGTAATATA---T
CGAGAGAAAGCAATCACGTATGCCTCAGATCTGAATTCCGTGCCT-CTTTGCGATGTTCGTGCTACGTGCTGCCTCTGTG
ATCTGGGCTTCTGAATGTGCCAG-----TCTGTAAGAGAATGACCTGG--TCACTGGAATGGTTTGCGTCTGAAGGCGTT
GGAGTCAAACAGCGCGCATGCATCTAACGGTCAATGCGTC-AACGGCAAGAAAAATGTAAAACGTCACACCACTATGCCC
TCGGCACCAGGTCGTTGCGTCTTCTGTGGTCTCCCACTCTAGCATTTTCGATCTTTTCTCTAGAGAAAATTCATAAAATT
ATAGCATCTATAGCCAGATTTGACAAATCTGACTCCCCAAACGGCCGCAGACGCGATCAGCACTAACTGATCACACCTCA
TACTTGGTGCTATGCATCCGAGTCTCTCATATTTCATTCTCTAGATCCATACTTGATGCT-----ATGCGTCCATGTGGG
AA-GGGTTTTTTT----GACCGCTTATTGATCGGACTGTCCGTCCGAGCGTTTGAGGGCGGTTTGGGGTGCCTGGCTATA
GATGCTCTTAGAGTAAGTCTAACAGACGCGTCATATTCATATCCTCTTATATCATTTTGGAGGTGTTTGCAATTTTTTGA
AAGCTACCAAGGCCGTGCGCAAAGTTAAAGTCATCATAATCCGAGCTCTATATTTTGCGGACTCGTTTGTCTATATTTAT
GTTCTTTA--AAAAAAAGAAATTGTACAGTACTTTTTCACATTGGCATTTCAATTTCCACCAGCAAAATTTGCTCTCGAC
ATCACATAATAGCCAAAACTGAAATAACCTAAAACA--AACACAAATTGAACAACGTTTTTAGTTCAGCCTACTCTTCCG
TTTG-AAGTGACCTC
>chr2D_6
-----AACCTTCGGTTTCTCTCATGTCTGATCGTGAGCGACGCTCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------
-----------------------------------------------TAGAGTATATTGGCTTGGCATATTTATATGTAT
TTTGTGGGAATATATTTGTAATCGGACTACCATAA--------CCATATTCATTCTGAGTAATATCTGTCCGCTGTCAAC
AAGTCTTCCGTATATAAACAAAAAA--TGACCTCTGTCAACAAGTCTTCAGTAGCAAGACCCGATCGACGTTGACTAGTC
GTGTTCTAAAGATATA--ACCACTGAAATCTTCAAGCT--TATATTTCAATGTTCTGCCAGGCACACATCGACTATTCTA
GGTTTGACAGAGTCCAACAAGGAGGGGCACCGTGAAATCCTTTGCCGGTAGGGTTGCGCCCATACGACATA-----TCAC
TGACTTTCTTGCCTAGTTCTCACACTTAATATGGTTTTGCTTAGGCAGTTAATTAGCACTGAGCACTGATA-------GA
CGCAACAACCGATCTCGGCCCGTTCTATCTACGTACGTGCATCCGCAGAGCCGCGGCTTCGCAGAAGGGAAGCGCACCGT
GGCCAACAGGCAAT-----------TGCAATTGATGGCTCGCTCACGCTCAGACATATCATC---GGAGTCATTTTCTAA
TGTATTCTGGCCATGACCGGAAAAATCAACCGGGAGAGCTCGTGCTCAGGACGCGTTTACTTACTTTTGGATCCTTGTTG
TTCACTAACCGGGAGCTTATCTGCTGCCGCTGCTGGGAATGTTCTTACAACAAAGCTGGTGGCTCATATTAGTCTTCAGT
CTTCACTAGTACCAGGTCCACTATCCCCCTCA-------------------------------------------CCCCG
ACCCCACGTAACTGCCCTGTA-------CTATATAAACAACAGCAGTGGCCATTGCTGTGCTCTCCACAGACATCATAAG
ACGCCTCGATCGAACACGAACCTTTCCAAAGATTCTCCTTGATCGGCATCTAAACAACAAACCAGCGGCACCCAATGAAG
G---TAAAGAGCTGCTTCAGTTTCTGCCTGGTTTTGAGCACTTA----CTAGCTCTTGAGCTGAACCTTCTTGTTGTTGT
T---------GCAGCAAAAGATTGTGATCAAGGTGAGCATGTCATGCGACAAGAGCCGGTCGAAAGCCATGACGATGGTC
GCCAAAGCGAACGGTAT----GCATGCATGC----GCTAATTCTTCACGTACACGTATGTTTACCCTTGATATTTTATGG
GTCAGCGATGCTAACATGGGCCGCAAGCGTTCTCTCTTCTCTGGGTGCAGGGGTGAGCTCGGTGGGGATAACCGGCGACA
GCAAGGACATGCTGGAGGTGGTCGGCAACGGCGTCGACCCGGTGTGCCTCGTCGGCTGCCTCCGCAAGAAGTACCACGAC
GTTCACCTCGTCAAGGTGGAGGAGGTGAAGGACGACAAGAAGAAGGATGAGAAGAAGGAGGACCCGCCGCCGTACTGGTA
CCAC---------CACCCATATGGGCCATACCCGCCTCACATGGTCGTGTGCGACGAGCCCACCACCCCCTGCGCCATCA
TGTAATTGCCAAATAGCCAGATGCCCAGTTCGCCATTTGGAGAGGCCGCAAGTTTATCCACCATTTCGGGCTATTGGCAA
ATTGGAAGAAATAAAGAA--------------------------------------------------------------
---------------ACGTATACCCCAGATCTGAATTCCTTGCCCCCTTCGCGATGTTCGTACTACGTGCTGCCTCTGTG
ATCTGGGCTTCCGAATGTGCCAAGCCAATCTGTAATGACCTGGTCACTACTCACTAGAATGGTTTGCGTCTGAAGACGTT
GGAGTCAAACAGCG----TGCATGTAACAGTCAATGCGTC-AACTGCAAGAAAAATGTAAAACGTCACACCACTATGCCC
TCGGCGCCAGGTCGTTGCGTCTGGTGTGGTCTCCCACTCTAGCATTTTCGATCTTTTCTCTAGAGAAATTTCATAAAATT
ATAGCATCTACAGCCAGACCTGACAAATCCGGCTCCTCAAACGTCCGCGGACGCGACCGGCACTAACCGATCACACCTCA
TACTTGGTGCTGTGCATCCGAGTCTCTCATATTTCATCCCCTAAATCCATACTTGTGCTATGCGCATGCGCCCGTGTGGG
AA-GGGTTTTTTTTTTTGACCAGTTACTGACCGGACCGTCCGCCCGGGCGTTTGAGGGGGGTTTGGGGAGCCTGGCTATA
TATGCTCTTAGAGTAAGTCTAACATACGTGTCATATTCATATCCTCCTATATCATTTCGGAGGTGTTTGTAATTTTTTGA
AAGCTATGGAGGCCGTGTGCAAACTTAAAGTCGTCATAATCCGAGCTCTATATTTTGCGGACTCGCCTATCTATATTTAT
GTTCTTTTCCAAATAAAGAAATTGTACAATACTTTTTCACATTGGCTTTTCAATTTCCACCAGCGAAACTTGCTCTCAAC
ATCACATAATAACCAAAATTGAAATAACCTAAAACATAAACAGAAATTGAACAACATTTTTACTTCAGCCTACTCTTCCA
TTTGAAAGTGACCTC
>SNPs
SSSSS-----------------------------S--SSS----------------------SSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
---S-------------------------------SSSSSSSS----------------------------S--------
--------------------------S---------------------SS-------------SS------S--------
------------------S----S--------------SS---------------------------S------------
-----------------------------------------------------------------------SSSSS----
-S------------S-----------------------------------------------------------------
S------------------------------------------------------------------S-------S----
---------S-S-SSSSSSSSSSSS-------------------------------------S-----------------
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------------S---------------------------------------------------------S---------
-------------------------S----------------------------------------------------S-
---------------------SSSSSSS----------------------------------------------------
-------------------------------------S---------------S-------------S-S----------
-SSS------------------------------------------S-------------------------S-------
------------------------------------------------------------------------------S-
--S-------------------------------------------------------------------------S--S
--------S----------------------S----------------------------S-------------------
----------------------S---------------------------------------------------------
------S-------------------------------------------------------------------------
----SS-SS-SSS-------------------------------------------------------------------
---------------S----------------------------------------------------------------
-----------S--------S--SSSSSSS----------------S---------------------------SSSSS-
-----S------------S---------------------S------------------------------------S--
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-------S---------SS---------------------S---------------------------------------
-----------------------S---------------------------------S-------------------S--
S----------------S----S--------------S---------------------SS-S-S----S---S------
-----S----------------S--------------------------------S---------------SS----S--
--S--S-----------------------S------S----------S-------S---------SS-------------
-------------------------------------S--------------------------------------S---
--------------S-----S---------------------S-----------------------S-------------
--------S-----------------S--S-SSS----------------------------S-----------------
----------S-----------------------------S---------------S-----------------------
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>forward_628
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------------------------------------------------AATGTTCTGCCAGGCACACT------------
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>reverse_1845
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----GGCTACCACCACCCATATGG--------------------------------------------------------
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>forward_714
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------------------------------------------------------TGCGCCCATACGACATACTG------
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>reverse_2423
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----------------------GCAAATCCGGCTCCCAAAAC--------------------------------------
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