>input_sequence_76846
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---------------------------------------------ATGGCCATGCCGCCACCGCCGCCCACGGGCATGCC
TCC---------GATGGGGCCAATGGGGCCGATGGCTCCGATGGCTCCGATGGGACCGATGGGACCGATGGGTCCGCCGC
CGGCAGCCGACATGCCTGGGATGGGGACGATGCCAGTGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTC
TTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGTATGTACGTCCTCTGCCTCCTCATCGTGCTCGCGCTCGCCGCGCT
CGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTCCAGCCGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTGCACG
CGGTGAAGATGGCGCTGGCGTACCTGGTGATGCTGGCTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCC
GGACACGCAATCGGGTTCCTCCTCGCGCGGAGCGCCGTGTTCCGCCAAGCGACTCCGGGTGACGCGCCCCAGAACGGTGC
TCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAA----------------------------------------------
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>chr2B_1_TraesCS2B01G226400
AAAAGAAGGAATTTTGCATCCTTCAAAAGATGGAAAACTTTCGAAACTTCCAGATTTTTT-CAACCGAAATTTTCAAAAT
AAAAAATTGGATTCAAAACATCTTAGCTTCAAAACATACAACAAATTTGATTGTATTTTTTCACAACCCAGTTGTAGATC
AACTGGTAAG-CCGCCCCTCCTTCATTCAGGAGGTCACCGGATTGAGCCACCACCCATGCACCTTTGGCATAATTTTTGT
GTGGGGAGAATAAAGGAGAGGATGTTCTACAAGAAGCTGGTTACAGCGAACAATTCTGAAAACTGACATAGCAGCAGCCT
TGCGCTGCGATTCGTGCTTGGATATTGAATGACAATCAACATGTTTGCTGCGAGAACACTATCATTTCCGTAGTCTAAAG
TACAATATTAGAATACTTTTTTGTGCGGGAAATAATATTAGAATACACATGGTTCAAAATACAACTAGTGATAAAATACT
CTGTCCAAAAATTCCCAAGATAA---------------------------------------------------------
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------------------------------------------------------------TAGTAATATCATGTCTGAGA
AGTAGCGTC-AGTGCCAATTGAAATATAGCGCTCAAACTTGGAAATCCACCCTAATAATTGGTTTTTAGTTGGAACTCAT
TTTTTGCGATGGAAAGTTGGAACTCTTGAA--ATACTACATGGCATCAGTTCGATAATACTCAGTCCTTT----------
----------------------AGTCCGTAGGTCAATATAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGT-T
GGAAGAGACAGCTACACCAGCAGCACCAGCACACTAAGACATCCTCTATCTGCTATCCCAATGCTCACGGTATCTAATGC
CCCTATCGCTATCATCTTTTCCTTGTTCTTGTTCCTATTTTCTTTCTTGTTAGATAGA----TATGCCTTTATTATGTCT
TTCCATTCTCTTGTAGAATTCCTCGCTTTCCAATAGACAAGAGTCACTGGGCGAGTTCTTCTTAACTATACTGCCCACTA
ACTCGTCGACCCGACATTTCTGCTCAACTCACCGGGGAA------ATGGCCATGCCGCCACCGCCGCCCACGGGCATGCC
TCC---------GATGGGGCCAATGGGGCCGATGGCTCCGATGGCTCCGATGGGACCGATGGGACCGATGGGTCCGCCGC
CGGCAGCCGACATGCCTGGGATGGGGACGATGCCAGTGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTC
TTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGTATGTACGTCCTCTGCCTCCTCATCGTGCTCGCGCTCGCCGCGCT
CGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTCCAGCCGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTGCACG
CGGTGAAGATGGCGCTGGCGTACCTGGTGATGCTGGCTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCC
GGACACGCAATCGGGTTCCTCCTCGCGCGGAGCGCCGTGTTCCGCCAAGCGACTCCGGGTGACGCGCCCCAGAACGGTGC
TCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAAGTTTGACATGATTAGATGCTGGAAATTGTTTTATTAAAACCCGGAT
GGATACTGAATATGAAAAGCACATGTATGGAGTACATTCAAGAGAATTAAAAGATTA--ATTCTATTACTCCTCGTCCTT
GGTTCGACATAACTCCTCAAGAGTTATAAGAAACGCGAACCTAACGATGGAATTCTCAGATTTAAATTTTCAAATGAATT
AGTCCCCACGCGAAGGCCTCT-TCCCTCATGATTGTTGAGGATGAGGGTGAAGGGGCAGCGTGCACGCATGATTTCGAGA
AACCCGATGTTCAGGTCCGCCTTCCAGAACAAGAGGCAGAGAGCATTGCCAACTTTCTGAAAATGCATCAACAACTGCAA
GATCAACAGGTGCATATATGCAACTTATGCATTATCTTGTGGAGTACATATGGGGTTCACACTGAAAATTAGTAAAGTTT
GCTTTTATTTTATCAATTATGCACTATGAACAATATCTATGTTTGAACTATGTTTAAATTTTGCATTATTAAGTATGAAC
AATTTGTATTCGTGTGTGTAAAACTATGTTTGGCCAAAATGGTCGACGTGCATATGTTTGCATGGATTTGATGTCTTAAA
AATAGAAACG-GTGATTGCAAATGACAAGATTTGATACCCGTTCAGCCATTATCCGCATACGCATCCGCTGCTGACGTAT
AGAGGCTCAGATTAGCACTCCGTGGTTGTAGATGCTCTTTTGTTTCTGGTTGGGCACCCGATTCTATTCTTGGTAAGCAG
ACACCAGGTCATACAGTATGTTGAATATTGCTCCACTGCGAGTTACATCTAGTATATAG---------------------
-----------------TTACACACTGTATCATAGATTCGTGGAGCTCCTATGCTTCTCTGCTGCTTTTCAGAGTTCATC
GAATTTTCCACATGACGTATATATAACATAATAAACACTGTTACAAAATCGCTGATTTAACACGGTCGACAGCCAGAGCA
CAAGGCCAAAAGAAACTCGTTTACTGGAGTTAGAGA
>chr2D_7
------AGGAATTTTGGTTCTTTCAAAAGATGGAAAAATTTCGAAACTTCCAGATTTTTTACAACCGAAATTTTCAAAAT
GAAAAATCGGATTCAAAAGATCTTAGCTTCAAAACATACAACAATTTTGACTGTATTTGTACACAACCCAGTTGCAGATC
AACTGGTAAGCCCGCCCATCCTTCATTCAGGAGGTCCCCTGATTGAGCCACCACCCACACACCTCTGTCATAATTTTTGT
GTGG------------AGAGGGTGTTCGACAAGATGCTGGTTACAGTGGACGATTCTGAAAACTGACGTAGCAGCACCCT
TGTGCCGTGATTCGTGCCAGGATATCGAACGACAATCAACACGTTTGCTGCAAGAACGTTATCATTTCCGCAGTCTAACG
TACTGGGAGTAC---------------------AATATTTGAATGCACATGGTTCAGAATACAACTAGTGATAAAATACC
CTGTCCAAAAATTTCCAAGATAA---------------------------------------------------------
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------------------------------------------------------------TAGTAATACCACGTCTGAGA
AGTAGC-TTTAGTGCCAATTGAAATCTAGCGCTCAAACTTGGAAATCCATCCTAATAATTGTTTTTTAGTTGGAACTCTT
TTTTTA--ATGGAAAGTTGGAACTCTTGAAATATACTACATGGCATCAGTTCGATAATACTCAGAGTCCTTTTTTTAGCG
AGTTCTCCTAGATAATACTCACAATCCGTAGGTCAATTTAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGT-T
GGAAGAGACAGCTACGCGGGCAGCACCAGCACGC-AAGACATCCTCTATCTGCTATCCCAAAGCTCACGGTATCTAATGC
CCCTATCGCTATCATCTTTTCCTTGTTCTTGTTCCTATTTTCCTTCTTGTTTGATAGA----TATGCCTTTATTATGTCT
TTCCATTCTCTTGTAGAATTCCTCGCTTTCCAATAGACAAGAGTCACTGGGCGAGTTCTTCTTACCTATACTGCCCACTA
ACTCGTCGACCCGACATTTCCGCTCAGCTCACCGGA-AA------ATGGCCATGCCGCCACCACCGCCCGGGGGCATGCC
TCCGATGGGCCCGATGGGGCCGATGGGGCCGATGGGGCCGATGCCTCCGATGGGG---------CCGATGGGTCCGCCGC
CGGCAGCCGACATGCCTGGGATGGGGACGATGCCAGTGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTC
TTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGTATGTACGTCCTCTGCCTCCTCATCGTGCTCACGCTCGCCGCGCT
CGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTCCAGCTGCCGGCCGGCCGCGGTGCTGGCGCTCACGGGGCTCCACG
CGGTGAAGATGGGGCTGGCGTACCTGGTGATGCTGGCTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCCGCCGTCGCC
GGACACGCGATCGGGTTCCTCCTCGCGCGGAGCGCCGTGTTCCGCCAAACGACTCCGGGTGACGCGCCACAAAACGGTGC
TCTCATTCCCTCGGAGGCTGAGCCCAAACCTTAAGC-TGACATGATTATATGCTGGAAATTGTTTTATTACGACCCGGAT
GGATACTGAATATGAAAAGCATATGTACGGAGTACGTTCAAGAGAATTACAAGATTATTATTCTATTACTCCTCCTCCTT
GGTTCGGCATAACTCCTCAAGAGTTATAAGAAACGCGAACCTGACGACGGAATTCTCAAATTTAAATTTGCAAATGAATT
GGACCCCACGCGAAGGTCTCTCTCCCTCGTGATTGTCGAGGATGAGGGTGAAGGGGCAGCGTGCACGCATGATTTCGAGA
AACCCGGTGTTGAGGTCTGCCTTCCGGAACAAGAGACAGAGAGCACCGCCAACTTTCTAAAAATGCATTGACAACTGCGA
GATCAACATATGCATATATGCAACTTATGCATTATCTTGTGGAGCACATGT-GGGTTCACACTGGAAATCAGTAAGCTTT
GCTTTTAATTTATCAATTAAGCACTATGAACAATATCTATGTTTGAACTATGTTTGGTTTTTTGATTATTAAGTACAAAC
AATTTGTATTCATGTGCACAAAACTATGTTTGGCCAAAATGATAGACATGCATGTGTTTGCATGGATTTAATGTCTTAGA
AAATAAAAGCTGTGATTGCCAATGACAAGATTTGATACCCGTTCAGTCACTGTCCGCCGGCGCATCC---GCTGACGTAT
AGAGGCTCGAATTAGCTCTCCGTGGTTGTAGATGCTCTTTTGTTTCTGGTTGGGCACCCGATTCTGTTCTTGGTAAGCAG
GCACCGGGACGTATAGTATGTTGAATATTGCTCCACTGCGAGTTAAAGTTAGTACAATTGGGTCATCTATTTTGGAACGG
AGGGAGTACATCTAGACTTACAAACTGCATCATAGTTTTGTCGAGCTCCTATGCTTCTCTGCTGCTTTTCAGAGTTCATC
GAATTTTCCACATGATG----TATAATATAATAAGCATTGTTACAAATTCGCTGATTTAACATGGTCGACAGCCAGAGCA
CAAGGCCAAAAGAAACTCTTTTACTGGAGTTGAGA-
>chr2A_170
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-----------CCGCCCCTCCTTCATTCAGGAGGTCACCGGATTGAGCCACCACTCACGCGCCTTTGCCATAATTTTTGT
GTGGGGAGAATAAAGGAGGGGATGTTCGACAAGAAGCTGGTTATAGCGATCGATTCTGAGAACCGACGTAACAGCAGCCT
TGCGTTGTGATTCGTGCCAGGATATCAAACGACAACCAACACAATTGCTGAGAGAATGTTATCATTTCCATAGTCTAA--
-------AGTAT---------------------AATATTTGAATACACATGGTTCAAAATACAACTAGTGATAAAATACC
ATGTCCAAAAATTTCCACGATAATCCTCTATAACACTAAGCTCTCTAGTTTTAAAGAGCCCACATTCAATTGATATCTCC
AATTATAATTGGGTCATCCGACTTTGACCGGATCAACAATTTCTTCAAGCTCTCTCATTCAAATATTTTATACTATACAC
TATGCTTCCTAATTTTTAAGGCTCACAATTAATTTTCTATAATCCTAATCTCCCTAGTTTTAAAGAGTCCACATTCAATT
GAGGTCTCCAATTATAATTGGGTCATCCGATTTTGACCGGCTCAACAATTTCTTCAAGCTCTCTCATTCAATTATTTTAT
AATATACACTATGCTTCCTGATTTTTAACGCTCACATTTAATTGATGTATTCAATTTAAAATCATGACATCCGATTTTGA
CCGGGTCAACAATTTCTCGAGCTCTCCCATTCAATTTTTTTAATTCACTATGTTCTCTAATTTTGAAACTCTTTCATTCA
ATTGAGATATTTAATTTTGCATTTGGTTTACGATTTTGACCGGGCCAACGATTTTTCAAATCAACGGGCGACAACCAGCC
TATAAAAACATATCAATCCCGCGCACCCTCCCAGCACCTAGAAAAAAGAAGCGTCGCCATGTGATATTGTAGCACCAATA
TGTTATATGCAACTACCGGTCCAAAAATTTCTTCACATAAATATAGGTTGGTTAGCGGATAACATAGAATCACATCACGA
AAGGTGCACCAAATCAATGCATTATAAAAGAAACATGTTCTATTACTTCCCCGCCCACCAAACTAAATATTCAACCAATT
CCAAAATATAAGGGGTATTAGTTTTTCAGAAAGTCAAATTTCTTTAACTTTGGTCAAGTTCAGAGCAAAACTATCAACAT
CCATAATATTAAACAAAATGACTATGAAAATTCATTTCATGATGAATTTAAAAATATTGATTCGATATTATGGATTTTGA
TAAATTTATCTATAAATTTGATCAAACTTAGAAGGTTTGTCTTTTTAGAAAAGTAATACACCTTATATTTTGAAATATAG
TGTTTTTTTAAGAAATCCAACAACGCCAACGGCGCGGCAAAACGCGCGCAACCCTTTTAGTAGTAATACCATGTCTGAAA
AGTAGCTTTTAGTGCCAATTGAAATCTAGCGCTCAAACTTGGAAATCCATCCTAATAATTGTTTTTTAGTTGGAACTCTT
TTTTTTT-ATGGAAAGTTGGAACTATTGAAATA-----CATGGCACCAGTTCGATAATACTCGTAGTCCTTTTGTTTTTT
GCGAGA---AGATAAGACTCACAGTCCGTAGGTCAATATAAAGGCTGGTTATAGGAAGAATCGGAGCAGCAGCCTTGTTT
GGAAGAGACAGCTACACCGGCAGCAACCAGG----AAGACATCCTCTATCTGCTATCCCAAAGCTCACGGTATCTAATGC
CCCTATCGCTATTATCTCTTCCTTGTTCTTGTTCCTATTTTCTTTCTTGTTAGATAGATATGTATGCCTTTATTATGTCT
TTCCATTCTCTGGTAGAATTCCTCGCTTTCCAATAGACAAGAGTCACTGGGCGAGTTCTTTTTAATTATACTGCCCACCA
ACTCGTCGACCCGACATTTCTGCTCAACTCACCGGA-AAATGGCCATGCCGATGCCGCCACCGCCGCCCGCAGGCATGCC
TCC---------G---------ATGGGGCCGATGGGTCCGATGGGGCCGATGGGGCCGATGGGACCGATGGGTCCGCCGC
CGGCAGCCGACATGGCTGGGATGGGGACGATGCCAGTGATGCACGCGGCCTTCTTCTGGGGGCACCGAGCGCAGGTACTC
TTCCGCGACTGGCCCGGAGACCGTGCCGGCGCAGGTATGTACGTCCTCTGCCTCTTCATCGTCCTCACGCTCGCCGCGCT
CGTGGAGGCCCTCTCCGCGGCGTCGAGGGGGGTCTCCAGCCGCCGGCCGGCCGTGGTGCTGGCGCTCACGGGGCTCCACG
CGGTGAAGATGGCGCTGGCCTACCTGGTGATGCTGGCTGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCTGCCGTCGCC
GGACACGCGATCGGGTTCCTCCTCGCGCGGAGCGCCGTGTTCCGCCAAGCGACTCCGGGTGACGCGCCACAGAACGGTGC
TCTCGTTCCCTCGGAGGCTGAGCCCAAACCTTAAGC-TGACATGATTAGATGCTGGAAATTGTTTTATTAAGACCCGGAT
GGATACTGAATATGGGAAGTATATGTACGGAGTACATTCTAGAAAATAG-------ATTATTCTAGTACTCCTCCTCCTT
GGTTCGACATAACTTTATAAAAAACACAACCT-------------GACGGAATTCTCAAATTTAATTTTTCAAACGAATT
AGACCCCACATGGAGG--TCTCTCCCTCATGATTGACAAGGATGAGGGTGAAGGGGCAACGCACACACATGATTTCGAAA
AGTCCGGTGTTCTGATCCGCCTCCCGGAACAAGAGGCAGAGAGC------------------------------------
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>SNPs
SSSSSS----------SS--S----------------S------------------------------------------
S------S----------S-------------------------S-----S-------S-S-------------S-----
---------------------------------------------------------S---------S------------
---------------------------S-----------------------S---------------S------------
-------S---------SS------S---S-----------S---------------SS-------------------S-
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------------------------------S
-------------S------------------------------------------------------------------
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--------------------------------------------------------------------S-----------
------S-S----------------S-----------------------S-----------S----------------S-
-----SSS--------------------------------------------------------SSSSS-----------
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------------------S-------------S-S--------------------------S------------------
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-----------------------------------SS--------------------------------S----------
---------------------S-------------S------------------S-------------------------
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------------------------------------------------------------------S-------------
---------------------------------------------------------------------------S----
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--------S-----------------------------------------------------------S-----------
-----------------------------------SS----------------------------------S--------
---------------------S-----S---------------------S------------------------S-----
------------------------------------------S----S----------S---------------------
--S-------------S-------------------S-------------------------------------------
------S------------------S-------------------SS-----------S---------SS--------S-
--------SS----------------------------------S----S-S------------S----S-----SS---
-------S-----------S-----------------------------------SSS----SS-----------SS---
-----------S----SSS----------------------S-S---S-----S---------------S--------S-
--SSS---SS---------S--------------------------S--S-S-----SSS-------SSS----------
--------SS------S------------------------------------------------S--------------
S----S--S-S--S-------------------------------S-SS-----S-SSS---------------------
----------------------S----S-------S--S--S--------------------------------------
---------------S-SSSS-----S-------S--S---------S--------------S-----------------
------------------S------------SSSSS
>forward_2116
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----------------TTTCTGCTCAACTCACCGGG--------------------------------------------
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>reverse_3348
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-------------------------------------------------------------------GCTGCTGACGTAT
AGAGGCT-------------------------------------------------------------------------
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