>input_sequence_76842
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----------------------------------------ATGCTGACGGCTGTGTTTCGGCTACCTGAAGTAGTCAAGT
TGCGTACAATATGTCTTCTTTGGGCATGGTGGTCTGAACGTAACAAGGCAAATCATAACCAATCACGTTTATCAGTAGAA
GCTTTTGAAGCAAAGGTTGGGCATACCATTACTGAATGGCGTGAGTTCTTGGGGCATAATTGTGGAGAAAAGCCAACGGT
GGTTCAGACGTGGTCTAGGCCTCCTGCAGATTTCATTAAGCTCAACTTTGATGCTGCTTTTAATGCCAACTCAGGGACTG
GGGGTTGGGGTGTCATTGCTAGAGATGTCGAC---GGCGAGGTTGTACTGGCTGATTCAGGGGCTCTGCATCATATGGGT
TCTGCACTTCAAGCTGAAGCTCATGCCCTGTTGAATGCCATCCGGCTAGCCGAGCAACTTGGTATGGGTCGTGCTATTTT
TGAGACCGACTGCTTGGCTTTGAAGCGGGCAATTGATACTGATTCAGCTGATCGGGGCCCTCTTGGCGTTTTGTTTTGTT
TCGGAAGCAAGATTTCAGCTTAA---------------------------------------------------------
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>chr2B_1_TraesCS2B01G066600
GCAAGGCGCAAACCCTAAGCAGCGTCGGGTGCATTCGTTCGCCAGGGGAGGCACATATGAGTCGGGGTGCTCTGTAGTGG
GCTTGGGCTGCTCATGTAGGCTGGCTGCTGTTGCTAGACAATGGGCTGAAAATTATCTAAAGAAACTTAACTGGGCTGCG
AAACGAGCCACCGAGCTGGACCGAGCAAAAACCGGCTCGGCTCGGTCGTCGAACGGGCCGAAATATGCAGCTCGGCTCGG
CCTATATTCTTGTCGGGCCGAGCTGAGTCGGGCCGAGCTGGAGCGAGTTTCGGGCCGAGCCGAAAAGCTCGCTCGAGCGC
CCAGTCCTAGATGCCACATCGCAGCCGGGTATGAGCTATGTGTGGCGGAGTATTCTGCAAGGGGTGGAAGTGGTAAAAGC
CGGTATGATTTGGCGTGTTGGTTCGGGTAACAACATTAGAATATGGGAGGATCCCTGGATCCCATCTGTTGACACTAGGC
GTCCGGGCACACTCCAAGGGAATCACCTTCTGACCACTGTGAATGAGCTCATCGATCCGGACAGGAATGATTGGGATTCT
CAGCTTGTTCATCAGACCTTTGCTCCAAATGATGCAGCTGCAATCTTGGCTATCCCAATCTGTGAGCATTACGACGACTT
TGTGGCGTGGCATTTTGATAGCAAAGGTAGGTTCTCAGTCAAGTCGGCATATCGGGTGTATGCGAACATTCTTACCCGGC
AGAATTACAGGCAGCGGGGAGAGAGCTCGACAATCCCTTCGGAAGGACAAAATTTCTGGCAGGATCTCTGGAAGATAAAG
TGCCCTCCGAGAGTTCATCATTTTCTGTGGCCGTTTGCACATAACAGCCATCCACTTCTAAGAAATATTGAACACATTGG
CGTACAGCTTGACAATAAGTGTGTAGTCTGCCGTCGACTTCCGGAGGTAAAAAAGCCTGGAGAGTTTGTTCGCTTGAGAA
TACTAGACTAAATCTGCTGGAGTGCGGAACATCAAGGGATATGCTGACGGCTGTGTTTCGGCTACCTGAAGTAGTCAAGT
TGCGTACAATATGTCTTCTTTGGGCATGGTGGTCTGAACGTAACAAGGCAAATCATAACCAATCACGTTTATCAGTAGAA
GCTTTTGAAGCAAAGGTTGGGCATACCATTACTGAATGGCGTGAGTTCTTGGGGCATAATTGTGGAGAAAAGCCAACGGT
GGTTCAGACGTGGTCTAGGCCTCCTGCAGATTTCATTAAGCTCAACTTTGATGCTGCTTTTAATGCCAACTCAGGGACTG
GGGGTTGGGGTGTCATTGCTAGAGATGTCGAC---GGCGAGGTTGTACTGGCTGATTCAGGGGCTCTGCATCATATGGGT
TCTGCACTTCAAGCTGAAGCTCATGCCCTGTTGAATGCCATCCGGCTAGCCGAGCAACTTGGTATGGGTCGTGCTATTTT
TGAGACCGACTGCTTGGCTTTGAAGCGGGCAATTGATACTGATTCAGCTGATCGGGGCCCTCTTGGCGTTTTGTTTTGTT
TCGGAAGCAAGATTTCAGCTTAATGTAGGCTTTATTGATCAT---ATTATGTCCTACACCCCCAGGACTTGTAATTCACC
AGCGCATGTGCTGGCCTCCCTTGGTGCAAAGGGTCCCCCGGATGGCCAACAAGTTTGGTACTCGGGCATCCCAGGAGATG
TATCTCGTGCTGTGTCTGCCGATTTGGTCGGTCCGCTGTAATTGGAATGCCAGGTGTTCCAGCTCAAAAAAGAAAAAAAG
AGGAACGAGGCCCCCTGCACTCCTCTCTCTATCGATCGAGATACTCCCGATCTATTTCCTAAGGTGTGAACGCCGCTGCA
GCATCCTCCACCGCCGCCAGTTTTTTTCAATCGAGAGGAGAAAACTTTCTCTTGCCTCTCTCGGGACGCCTCCGCTCTTT
CTCTTGCCCGCTAGGGTTTCTCGCCCCAAGGATTATCTGGCCGCCGCCGATTCTCCCTGCCTTCAATCGATGCCATGATC
CGTTAACTAACCTTGTCTGGCCGTGGATCTAGCGCTGCCGGAGGGGCCGCTGTGTGTCCCATGCGGGCTCGCCAGCCGCC
GCCAGATCCCCACATCCCCGAGCTCGATGTCGTCGCGCACTTCCCTTCAGGTTGACCACGTACAGAGACAAGGTACACTC
CCTACTTGTTGCTGATGTGCCTTACTGTGACGCTGCTGGATGGTGCTGCTGCACTCGGGTCATCTCGTCCGGTACCATGC
CTCGTTGCTGAGAGATGCCTTGAGACGCCCGCCGGCCCGCCGCCATCGCATTTCAAGAGACGGGAACGGGAGGAGACAAA
GGGGATTCGAAGGGGGCGCGAGTGCCGACCTTGCTGGTGGGTTGGGTGGCCGATTGATGAAGGTTGTCCTTGCTTTCCGT
CCTTTCTAATCGGCAAACGCACTCAGCGTGGAGCGGGGCGTCGGCCTGTGCAGCACAAAGGCAAGGAGCTTTCGTACGCC
ATAAGAACTTCATCCAGCTCGGTATGAATCGCTGTTTTTTTCCTATGTTGTAATCTGATACACATG
>chr4A_969
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--------TAAATCTGCTGGAGTGCGGAACAGCGAGGGATATGCTGACGGCTGTGTTTCGACTACCTGAAGTAGTCAAGC
TGCGTACAGTATGTCTTGTTTGGGCTTGGTGGTCTGAACGTAACAAGGCAAATCATAACCAATCTCGTTTATCAGTGGAA
GCCTTTGAAGCAAAGGTTGGGCATACCATTGCTGAATGGCGTGAGTTCCTGGGACCTAATTGTGGAGAAAAGCCAGCGGT
GGTTCAGACGTGGTCTAGGCCTCCTGCAGATTACATTAAGCTCAACTTTGATGCTGCACTTAATGCCGACTCAGGGACTG
GGGGTTGGGGTGTCATTGCTAGAGATGTCGACGATGGCGACGTTGTACTGGC--------------TGCATCATATGGGT
TCTGCACTTTAAGCTGAAGCGCATGCTCTGTTGTATGCCATCCGTCTAGCCGAGCAACTTGGTATGGGTCGTGCTATTTT
TGAGACCGACTGTTTGGCTTTGAAGAGGGCAACTGATACTGATTCTGCTCATCGAGGCCCTCTTGGCGTTTTGTTTCG--
--GGAAGCAAGATTTCAGCTTAATGTAGGCTTTATTGATCATCATATTATGTCCTACACCCCTAGGGCTTGTAATTCACC
AGCGCATGAGTTGGTCTCCCTTGGTGCTAAGGTTTCCCCGGATGTCCAACAAGTTTGGTACTC-----------------
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>chr3B_1073
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--------------------------------TCTGAACGTAACAAGGCAAATCATAACCAATCACGTTTATCAGTGGAA
GCTTTTGAAGCAAAGGTTGGGCATACCATTTCTGAATGGCGTGAGTTCTTGGGGCATAATCGTGGAGAAAAGCCAACGGT
GGTTCAGACGTGGTCTAGGCCTCCTGCAGATTTCATTAAGCTCAACTTTGATGCTGCTTTTAGTGCCAACTCAGGGACTG
GGGGTTGGGGTGTCATTGCTAGAGATGTTGAC---GGCGACGTTGTACTGGCTGCTTCAGGGGCTCTGCATCATATGGGT
TCTGCACTTCAAGCTGAAGCTCATGCCCTGTTGAATGCCATCCGGCTAGCCGAGCAACTTGGTATGGGTCGTGCTATTTT
TGAGACCGACTGTTTGGCTTTGAAGCGGGCAATTGATACTGATTCAGCTGATCGGGGCCCTCTTGGCGTTTTATTTCG--
--GGAAGCAAGATTTCAGCTTAATGTAGGCTTTATTGATCAT---ATTATGTCCTACACCCCCAGGACTTGTAATTCACC
AGCGCATGTGCTGGCCTCCCTTGGTGCAAAGGGTCCCCCGGATGGCCAACAAGTTTGGTGCTCGGGTATCCCAGGAGATG
TATCTCGTGCTGTGACTGCCGATTTGGTCGGTCCGCTGTAATTGGAATGCCAGGTGTACCAGCTCAAAAAAAAAAAAAA-
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----------------------S-S--------------------------S------------------S
--------S--------S-------S--------------------------------------------------S---
------------------------------S-------------------------------------------------
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----------------------------------------S-------------S-------------------------
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------------S---------------------------------------------------------------S-SS
SS------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------S------------------------------------------S-------------S-------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_655
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---------------------------------------------------------------------------GACTT
TGTGGCGTGGCATTT-----------------------------------------------------------------
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>reverse_2280
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---------------------------------------CCGCCATCGCATTTCAAGAG---------------------
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