>input_sequence_76841
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---------------------------------ATGGCGACCGCATCGCACGACGAAAACCGGCCTCGGAGATTCGATGC
TACCATGTCAAGGAGGACAATAAGAAGACCAGCCGCTGCAAGGTTGGTCACTGCTGGTTGCGACCGAGATGCTCATCAGC
TGAAGCCACCGTCTGAGCACAAGACATCGCCGGAGCTAGACGGAGATGATGGAAGGATGGCGTGTCACCTCCAGGAGCCG
CAGGAGGAAGGTCAGGATAACTCGCGTAATTTCTCGCTACAGGAACTGATAGATGAGCCGATCAACGGCGACGACGACAG
GGACCCCGGCACTGCCACCGGAAGCCAAGGAGAGATCAGCGTCGCCACGGCCGCTCTCCGTGGTCATGGAGTTGAAGAAC
CAGTTGCTGGTGCAAGGAAACAGCTGCCTGGACATGTGGTGGGCAGGAGGGTGGTCCGACTGGTGCGCCGGTACGTTAGA
GTCCAGGC------CAAGCACGCGCCGGAGAAGAAGGCCGTGCCTTTACGCATGGATGGTTGGTGCAGAGACACGGCGAC
CGACCGGCCGGCAGTTTAA-------------------------------------------------------------
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>chr2A_1_TraesCS2A01G563300
ATCTTGACCCATTGGCCAACCGACAGCCGCCGTTCCGACAGCGGAAGCGCCGTTAACGGCCGTCAACGCGCGCCGGCCGC
CCGTTAGCCCGCGTGGCAACTGTTCGCGGGCCCAACCGGTCAGAAACGGGGTTAGCGCGGGCGAAGCGAGCATTTTCGCG
AGTTGGTAGTTTTTTGTCACGGTTTAGGAAAAAATTTGATAGTTTTTCGCACAAAAACGTAGAGTGGTAGTTTTCCGTCA
CGTTTCCGGCAAATGTGGTAGTTTTTGGTTAAATACTCTCCAAATTATTTGTCGCAGAAATGGATGTATCTAGAACTAAA
ATACATCTAGATACGTCCATACCTGCGACAAGTAATTCAGAACGAAGGGAGTAGTAGGTTCACATCTTCTAGGTTCGGAT
ACCTGCACAAACATAGCGAAATCAACCATAAAGTTTACAGAAATTCACCGGGCTCCGCAATAGTCAAGATCCTTGGATAA
GCCAAAGGCTAATACATGCTTCTTTCATACTCCTAGCTTTCAACAACACCAGGCTGGTCTAATTCGGCGATAAATGGAGC
TATATCCTTCCAAACAGGTTCGTTCATCTCGCCACACCGTGTGGGTGTGGGCTGTGTCGGTAGGTGAGTTCAGTCACATC
GTCCTGGTTCTTGGATTGGATTAGAAGAGTTCGTC----TACAGCATATCAATCAGTTCCCTCCATGCATTCCTTGGGCT
TTATCCCTAAGTTATCCCTAG---------TACATTCCTGTAT-------------------------------CTACCC
ACAAGCTTATTCTTGGTTCAATACTCTTTTTGTGTACCATGCATAAGC----TGCCTTCTATCCTACTTAACATTGCTCA
GATAGCTCCCTTGCAGA--CGTGCACGTAGACGCATCAAGCACCTAG--------GTCCTCGTATCCCTGGCCTG---GC
ATTATATATATGAACAACTTTTCCTCCCAAGTCCAAGTACCAGGCAGGGATGTGATCTTCT------------TCTTCTT
CTTCTTCTTCCAAATAAGTTCACTGGGACAACAATGGCGACCGCATCGCACGACGAAAACCGGCCTCGGAGATTCGATGC
TACCATGTCAAGGAGGACAATAAGAAGACCAGCCGCTGCAAGGTTGGTCACTGCTGGTTGCGACCGAGATGCTCATCAGC
TGAAGCCACCGTCTGAGCACAAGACATCGCCGGAGCTAGACGGAGATGATGGAAGGATGGCGTGTCACCTCCAGGAGCCG
CAGGAGGAAGGTCAGGATAACTCGCGTAATTTCTCGCTACAGGAACTGATAGATGAGCCGATCAACGGCGACGACGACAG
GGACCCCGGCACTGCCACCGGAAGCCAAGGAGAGATCAGCGTCGCCACGGCCGCTCTCCGTGGTCATGGAGTTGAAGAAC
CAGTTGCTGGTGCAAGGAAACAGCTGCCTGGACATGTGGTGGGCAGGAGGGTGGTCCGACTGGTGCGCCGGTACGTTAGA
GTCCAGGC------CAAGCACGCGCCGGAGAAGAAGGCCGTGCCTTTACGCATGGATGGTTGGTGCAGAGACACGGCGAC
CGACCGGCCGGCAGTTTAATTAGCAAG----TATATATACCATCTGTTTGAAA-ATATATTTTCTTTGCCGAAAAGAATG
CGCTGCTTCGTATTTTGTGCTGATTATTATATTCCTAAATAATCGATAATTA---TAATTGTAAGCCTAGGACTAGCTAA
GTGTTGATTGATGGCTCTATTTTTCTGATCATGGACATAGCGGTAATGTCGACAATATTTAAGGGCACGATGTTGGTAGA
ACACTTGTGTTAAATTGACCTTAATTGTATGTTATATTTACAAATGATTTCATCACAAGTCTATATAGTCCATAGCACGA
GAAATTATATGCACAATTTCTTAGACCAGAGAGTATCAAAGTCACTTCATAAATGCCGATACACTTTCAGACGAGCCCTC
AACTTAGATTCCTTCCTAAGATTTATTTTGTTTACTTAGGCGGATCCTCGTTGGTGTGCCGACAAAATGTCGTGTCGGGA
GAAGAACATTGAAAAGTGGACAAGTCCAGAGTGGTAGTAGGTTGATGTGTGCTCCAGCTCACTGTCAAGGCGACCTCATC
ATCACTAGTGTCATGGACAAACATGTAAGTAACAACCTCCATTTCTTCCATGAATTTATTCTTCATGCGCCGGCGCAACG
GCTTGCACTCAGTTCAGATGCATGCATGACAACATGTAAGAACATCTCCGGCCGTTGGCCCCTCAGGAGGCGCCTAAAAT
CACCGTCTGGGAGTGAGCCGGCGTAAAAAATCGGCCTGGGAATGAGTTGATCCTCAGCCGCCGGCCCCAGGGCCGTCCCA
GTCGCGTTCAAAAAATGAAAGTATATAGCAAATTTAGACAAAGTTCGACAAAGTTCGGTTAAACACGACAAATTTCATCC
AACTTGAACATATATTTCAACAAAGTTTGCGGATTTTCATTACATAGCAAATATATAAACTAATTTAAAAAAGAAACTGA
TTGAACGCCGAGTAATCGCCGTCGTCGCCGCCATCGTCATCGTCGGCCTTCTCCTCCTTGACGCGGG
>chr2B_628
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-------------------------------------------------------------------GTTCAGTCACATC
GTCCTGGTTCTTGGATTGGATTAGAAGAGTTCGTC----TATGGCATATGGATCAGTACCCTCCATGCATTACTTGGGCT
TTATCCCTAAGTTATCCCTAG---------TAGTACATCCCTGTACCTGCCATGGAGATATAAACCTGCCCGTACTACCC
ACAACCTTGTTCTTGGTTCAATACTCTTTTTGTGTACCATGCATAGGC----TGCCTTTTGTCCTACTTAACATTGATCA
GATAGCTCCTGGC-AGACGCGTGCACGTAGACGCATCAAGCACCTAGCCACCTAGGTCCTGATCTCCCTGGCCTGCTGGC
TGTATATATATGAACAACTTTCCCTCCCAAGTCCGAGTACA-------------CCATACAAAATCCATGTGATCTTCTT
CTGCTTCTTCCAAATAGGTTCACTGGACCAACAATGGCAACCGCGTCACGCGACGAAAACCGGCCTCGGAGATTCGACGC
TAGCATGTCAAGGAGGACAATAAGAAGACCGGCTGCTGCAAGGTTGGTTGCTGCTGATTGCGACCGAGATGCTCATCAGC
TGAAGCCACCGTCTGAGCACAAGACATCGCTGCAGCTAGAGGGAGATGATGGAGGGACGGCGTGTTACCTCCAGGAGCCG
CAGGAGGAAGGTCAGGATAACTCGCTTAATTTCTCGCTACAGGAGCTCATGGATGAGACGATCAACGGGGACGACGACAG
GGACCACGGCGCTGCCACCGGAAGCCAAGGAGAGATCGGCGTCGCCACGGCTG------GTGTCCATGGAGTCGCAGAAT
CAGCTGCTGGTGCAAGGAAACAGCTGCCTGGACATGTGGTGGGAAGGAGGGTGGTCCGACTGGTACGCCGGTACGTCAGA
GTCAAGGCTAAGCACAAGCACGCGACGGAGAAGAAGGCCGTGCCTTTACGCATGGATGGTTGGTGCAGAGATACCGCGAC
CGACCGGCCAGCAGT----TTAGCAAAAGTATATATACACCATCTGTTCGGAAAATATATTTTCTTATGGAAACAAAATG
TGCTGCTTCGTA--------------------------------------------------------------------
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>chr2D_636
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---------------------------------------------------------------------------ACATC
GTCCTGGTTCTTGGATTGGATTAGAAGAGTTCGTCTATATATGGCATATGGACGAGTA-CCTCCATGCATTCCTTGGGCT
TTATCCCTAAGTTATCCCTAGCTAGTAGGCTAGTACATTCTTGTACCTGCCATGGAGATATAAGCCTGC---TACCACCC
ATGACCTAATTCTTGGTTGAGTTCTCTTTTTGTGTACCATGCATATATATGTTGCCTTTAATCCTACTTAACATTGATCA
GATAGCTCCCTTGTAGATGCGTGCACGTAGACGCATCAAACACCTAG--------GTCCTCATCTCCCTGGCCTG---GC
TGTATATATATGAACAACTTTCCCTCCCAAATCCCAGTACCAGGCAAGGAGATCCCATACAAAATCCATGTGATATTCTT
CTTCTTCTTACAAATAAGTTCACTGGACCAACAATGACTACCGAATCGCATGACGAAACCCGGCCTCGGAGATTCGACGC
TACCATGTCAAGGAGGACAATAAGAAGACCGGCTGCTGCAAGGTCGGTCGCTGCTGATTGCGACCGAGATGCTCATCAGC
TGAAGCCACCGTCTGAGCACAAGACATCGCTGCAGCTAGACGGAGACGATGAAGAGACGGCGTGTTACCTCCAGGAGCCG
CAGGAGGAGGATGAGGATAACTCGCGTATTTTCTCACTAAAGGAGCTGATAGATGAGACCATCAACGG---CGACGACAG
GGACCCCGGCGCTGCCACCGGAAGCCAAGGAGAGATCAGCGTCGCCACAGCCGCCCTCCATGGTCATGGAGTCGCAGCAT
CAGCTGCTGATGCAAGGAAACAGCTGCCTGGACATGTGGTGGGAAGGAGGGTGGTCCGACTGGTCCGCCGGTACGTCAGA
GTCAAGGC------CAAGCACGCGCCGGAGAAGAAGGGCGTGCCTTTACGCATGGATGGTTGGTGCAGAGACACGGCGAC
CGACCGGCCGGAAGT----TTAGCAAG----TATATACACCATCTGTTGGAAATATATATTTTCTTTGCCGAAGAGAATG
TGCTGCTTCGTATTTTATACTAATTATTATATTCCTAAATAATCGATAATTACTATAATTGTAAGCCCAGGACTAGCTAA
GTGTTGGTTGATGGTTCTATTTTTTTGATCATGGGCATAGCGGTAACGTCGACAATATTTGGGGGCACGATGTTGGTAGA
ATATTCGTGCTGAATTGACCCAAGTTATATGTTATACTTA----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-----------------------------------------SS------SS------S----------------------
--------------------------------SSSSSS-S-SS-------------------------------------
----S----------------------------------------S------------S-----------------S---
-------------S-----------------------------------------------S-S----------------
SS-------------------S------------S-----------S---SS-SSSS-S-S-------------------
--------------------------SS----------S--------------------------------------S--
------------------------------S--S---------------S------S-----------------------
------------------------------S-S--------------------S---S-------S--------------
--------------------------------------------S------------S----------S-----------
----------S-------------------------------------------S-----------------S-S----S
---S---------------------------------------S--------------------S-----------S---
---S----------------------------------------------------------------------------
---------------SSSS------------------S----------S------------------------S------
S---------------S-S--S---------------------------------------------S------------
------S-------S---------S---------S-----------S-------------SS------------------
-S-S-S---S-S--------SS-S--S---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_249
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---------------------------------------------------------------------GTTTTCCGTCA
CGTTTCCGG-----------------------------------------------------------------------
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>reverse_2049
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------------------------------------------------CGTTGGTGTGCCGACAAAAT------------
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