>input_sequence_76835
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-----------------------------------------ATGTCTGGTCTCACGAGGCGCCTGCTAGGGTTCATGGCG
AGCGACCTCGGAGTGGAGCGGGAGGCGCTCGACAGGGCCTTCCGGGGCAAGAGGCAGACCGTGGCCATGCACCACTACCC
TCCATGCCGGCACCCGGACAAGGTGATAGGCATCACGCCGCACCACGACGGCCTCGGCCTGGCGCTCCTGCTGCACGTGG
ACGACACCCCCGGCCTGCAGGTGAAGAGGGACGGCAGGTGGTTCCCGCTGGACCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTCCTCACCAACGGCAAGTACAGGAGCGCCGAGCATAGGGTGTTGGTGGACGCCGAGAGAGG
CCGGGCGACCGTGGTGATGTTCCAGGACGCGTCCGTCGCCGGGACGGTGAAGCCGCTCCCGGGGCTCGGCGAGGCAAGGT
ACAGGGAGATCGAGTACGGTGAGTATGTCAAGGGGAATTTCAGGGGGCTCGCTGAAGGGACCAGGTTCGTGGACAGCCTC
GAGACCAATCGGTTTTGCTAA-----------------------------------------------------------
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>chr1A_1_TraesCS1A01G331600
CAAAAGTCAAAACAATGTGGATTCGTTACCACAAAATGGTCCGACCGCTGTATCACTATACCTACCCACCCAAAACAACA
TTATTGAGATGCGCATGCCCACCATCGAACCATTGACAGTTTTTCTTGGATAAAATCTAGATTCTCAACAGGGCGCACAA
CTCACGACTCAGC-------ACATACCTGAACGCAGCAGAGAAGGACCGGGGCGACTCAGCACTAATTCCTGGGAGG---
---AGGAGGAGGAGGACGTACACGCACGGGAGGGTCGATGGAG---ATCGACGGCGACCTCCTCGTCACCAGGGCCGAGA
TCACGAACGCCGCGGCGGCCACGTTCGCGGACTCAACCGTGATTCCCGACAGGTACGCCCGGCCGGACGAGGTCGGGGAC
GGGGTCGTGGTGGGCG---ACGACGAGAGCCACGAGCTGCCGCTCGTAGACATGGCGAGGCTGCTCGACTCGGAGTCCTC
GGAGGCGGAGACCGCCAAGCTTGGCTCTGCGTGTCGAGACTTGGGCTTCTTCCAGGTTAGG---CATCCTTCATCCT---
--TTT--TCGTATATAT---------------------------------------------------------------
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--------AGAGGGAATCTGCATTTGCATTATCCTTTT--TC-TGTAACAAATCTAC-----ACATTCTT-CG-------
--------------------------TTTGCAGCTAACAAACCATGGACTTGACGAATCGGTTGTGCAAGACATGAAGAA
TAACGCTATGCAGTTCTTCCGCTTGCCACTGGAGAAGAAGAACGCGGTGGGCATCCAGGCCGGCGGCTTGGGAGGGTTTG
GGCACCACTTCACCGGACCATCCCGGGAC---AAGTTGGACTGGGCAGAGAGCCTGATACTCACGACGCAGGAGAACGAG
CAAACGAACGTGGAGTTCTGGCCAGCCGATCCGCCAACATTTAGGCAT---TCCTAATACACTACTACTGG---------
---------------TA-TGACTTTCGTCCAAAGTCAAATAGTGCA----------------------------------
------------------------CATGCTTATCACTCTGCTTGCTTTAATTCGGAGGTCTTATTC----GCCTGCTTAT
AACA------CAGGGATGCACTCGAAAAGTACTCGCTCCAGATGTCTGGTCTCACGAGGCGCCTGCTAGGGTTCATGGCG
AGCGACCTCGGAGTGGAGCGGGAGGCGCTCGACAGGGCCTTCCGGGGCAAGAGGCAGACCGTGGCCATGCACCACTACCC
TCCATGCCGGCACCCGGACAAGGTGATAGGCATCACGCCGCACCACGACGGCCTCGGCCTGGCGCTCCTGCTGCACGTGG
ACGACACCCCCGGCCTGCAGGTGAAGAGGGACGGCAGGTGGTTCCCGCTGGACCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTCCTCACCAACGGCAAGTACAGGAGCGCCGAGCATAGGGTGTTGGTGGACGCCGAGAGAGG
CCGGGCGACCGTGGTGATGTTCCAGGACGCGTCCGTCGCCGGGACGGTGAAGCCGCTCCCGGGGCTCGGCGAGGCAAGGT
ACAGGGAGATCGAGTACGGTGAGTATGTCAAGGGGAATTTCAGGGGGCTCGCTGAAGGGACCAGGTTCGTGGACAGCCTC
GAGACCAATCGGTTTTGCTAATGGGTATTCTGTTGGCTTTGTTTTAGGTGTGTTTTGTTTGCCTCGGCGTGTGCGTGTGT
GTGGGTTGTGAACTTGTGGTTGTGTGTTCTTGCCCTAATGCCCTGTGTGCGCGCGCGCGCGCGCGTATATGTCTCCGTAT
GGAATTCATTTCTGTAAGTGATCTGCTTGAATCATAATAATATTAAAGTTGCACTACTATATGCTTGTTTCTTGCATTTT
TGGAATAGTGGAAGTTCTATAAAATCTGCTATAAATTTAGTCTATCATTTTCTTGATATTTTTATTTGTTTGTTCTTCTT
TTAGGTAATACCGGTACACTCATTTCATTATAGTAATAAATGTCCTTTTATTTTTTTATGATGTCTTTGTTTATTTATGC
TTAGTCAAAAAAGTTTGTCCGTTGGATTTTCTCTAATATTTGTGCATGTGACAGTGTATTCGATGTCCAAATCATGTGTC
ACACATTAGTTTTGCGTTAGGAACTTGTATGTAATTTATTTTGTAAGTGATCTAATTCAATCATAATAATTGTTGAAGTT
GCACTACTCTTTGATTGTTATTGAAAAGGCTCAGGTAGAAGTTCTCCAAGGGTCACAGTCCCCTCCCGAGGCGCTCCCGC
GGGCGCCCCTGGGAGGGAACCCTAGCGCCGCCGCCCCCGTCCCTCCGCCCCTTCCCCCCTCCCTCGCCGCCGCCGGTGGC
GTCGCCGGCCAAAGGTCGCGTGGCGCAGGCGGCGGCAGGGCGGCTCTCTCCCTCGCGCGGGTGGCGGACGTCGCGGGGCG
GCCTCCCCTACTCGGTGGCGTCGGGCGTCGGCTTGCCTCTGCTCCGGCTTCCCTCCTCTGCCTCGCTCCCTGGTGACCGG
CCGGCGTCGCCTCCTCTCCTCCCCCCTCCTCGTGGGGCTCTGGAGGCCCGGGGGTGTGCTGGTGGCGGATCTGGAGCCCC
CTGCCCAGATCCGGCGGGTGCTAGCGGTTGGCGGATGCAGGGGCGACCGGCGGCCCCTTCT
>chr1B_7
------TCAAAATAATGTGAATTCGTTACCACAAGATGGCCCGACCGATGTGTCACTATACCTACCCACCCAAAACAACA
TTATTGAGATGCACATGCCCACCATCGAACCATCGAC-------------------------------------------
----CGACTCAGC-------ACATACCTAAACGCAGCAGAGAAGGACCGGGGCGACTCAGCATTTATTCCTGGGAGA---
---AGGAGGAGGAGGACGTACACGCACGGGAGGATCGATGGAG---ATCGACGCCGACCTCGTCGTCACCAGGGCCGAGA
TCACGGACGCCGCGGCGGCCACGTTCGCGGACTCAACAGTGATCCCCGACAGGTACGCCCGGCCGGACGAGGTCGGGGAC
GGGGTCGTGGTGGGCG---ACGAGGAGAGCCACGAGCTGCCGCTCGTAGACATGGCGAGGCTGCTCGACTCGGAGTCCTC
TGAGGCGGAGGCGGCCAAGCTTGGCTCTGCATGTCGAGACTGGGGCTTCTTCCAGGTTAGA---CATCCTTCATCCT---
--TTT--TCGC----ATAGAG-----------------------------------------------------------
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------------------------------------------------------GGA-----------------------
-------------------GCATTCGCATTATCCTTTT--TTTGGTATCAAATCTAC-----ACATTCTTCCG-------
--------------------------TTTGCAGCTAACAAACCATGGACTCGACGAATCAGCTGTACAAGACATGAAGAA
TAACGCTGTGCAGTTCTTCCGCTTGCCACTGGAGAAGAAGAACGCCGTGGCCATCGAGGCCGGCCGTTTGGAAGGGTTTG
GGCACCACTTCGCCGGAGCATCCTG---CGACAAACTGGACTGGGCAGAGAGCCTGATACTCGCGACGCAAGAGAACGAG
CAGACGAACATGGAGCTCTGGCCCGCCGATCCGCCAACATTTAGGTCT---TCCTGATACACTACGGTTACAAAATACTC
CCTCGTAGGAAGGCATA-TAACTTTGGTCCAAAGTCAAATAGTGCATTATTTGACTTCAGCCAAAATTTATAGGCCTTCT
TTCAAG-----CAGGGAGGGAGCACATGCTTATTACTCTGTTTGCTTC---------ATCTCATTC----ACCTGCTTAT
AACAC-----CAGGGATGCACTTGAGAAGTACTCGCTCGAGATGTCTAGTCTCGCGAGGCGCCTCCTGAGGTTCATGGCG
AGCGACATCGGAGTGGAGCGGGAGGCGCTCGACGGGGCCTTCCGGGGCAAGAGGCAGACCGTGGCCATGCACCACTACCC
TCCATGCCGGCACCCGGACAAGGTGATAGGCATCACGCCGCACCATGACGGCCTCGGCCTGGCCCTCCTGCTGCACGTGG
ACGACACCCCGGGCCTGCAGGTGAGGAGGGGCGGCAGGTGGTTCCCGCTGGATCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTGCTCACCAACGGCAAGTACAGGAGCGCCGAGCATAGGGTGTTGGTGGACGCCGAGAGAGG
CCGGACGACCGTGGTGATGTTCCAGGGCGCGTCCGTCGCCGGGACGGTGAGGCCGCTCCCGGGGCTCGGCGAGGCCAGGT
ACAGGGCGATCGAGTATGGTGAGTATGTCAAGGGGAATTTCAGGGCGCTCGTTGAAGGGACCAGGTTCGTGGATAGTCTC
CAGACC--------------------------------------------------------------------------
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>chr1D_7
------TCAAAACAATGTGAATTCGTTACCACAAGATGGCCCGACCGATGTGTCACTATACCTACCCACCCAAAACAACA
TTATTGAGATGCACATGCCCACCATCGAACCATCGAC-------------------------------------------
----CGACTCAGCAGTCAGCACATAGCTAAACGCAGCAGAGAAGGACCGGGGCGACTCAGCATTTATTCCTGGGAGAAGG
AGGAGGAGGAGGAGGACGTACACGCACGGGAGGATCGATGGAG---ATCGACGCCGACCTCGTCGTCACCAGGGCCGAGA
TCACGGACGCCGCGGCGGCCACGTTCGCGGACTCCACCGTGATCCCCGACAGGTACGCCCGGCCGGACGAGGTGGGGGAC
GGGGTCGTCGTGGGCG---ACGACGAGAGCCACGAGCTGCCGCTCGTAGACATGGCGAGGCTGCTCGACTCGGAGTCCTC
GGAGGCGGAGACCGCCAAGCTTGGCTCTGCGTGTCGAGACTGGGGCTTCTTCCAGGTCAGG---CATCCTTCATACT---
--TTTCTTCGTATATATAGAG-----------------------------------------------------------
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------------------------------------------------------GGAAGTGTGCATTCCCCGCAAAAAAA
GAAGAAGAAGAGGGAATTTGCATTCGCATTATCCTTTT--TTGGGTATCAATTCTAC-----ACATTCTT-CG-------
--------------------------TTTGCAGCTAACAAACCATGGACTTGACGAATCAGTTGTACAAGAAATGAAGAA
TAACGCCATGCAGTTCTTCCGCTTGCCACTGGAGAAGAAGAACGCAGTGGGCATCCGGGCCGGCGGCTTGAGAGGGTTTG
GGCACCACTTCAGCGGACCATCCCGGGAC---AAGTTGGACTGGGCAGAGAGCCTCATACTCACGACGCAGGAGAACGAG
CAAGCGAACATGGAGCTCTGGCCCGCCGATCCGCCAACATTTAGGTAT---TTCTAATCCACTACTGTTA-AAAATACTC
CCTCGTAGGAAGGCGTACTAACCTTCATCCAAAGTCAGAACAGCATTAGTGTCAAAAAGCTCTTATATTATGAGACGGAG
GGAGTAGTAAACAGGGAGGGAGCACATGCTTATTACTCTGTTTACTTC---------GTCTCATTC----TCTTGCTTAT
AAAA------CAGGGATGCACTTGAAAAGTACTCGCTCCAGATGTCTGGTCTCGCGAGGCGCCTCGTGGGGTTCATGGCG
AGCGACCTCTGAGTGGAGCGGGAGGCGCTCGACGGGGCCTTCCGGGGCAAGAGGCAGACCGTCGCCATGCACCACTACCC
TCCATGCCGGCACCCGGACAAGGTGATAGGCATCACGCCGCACCACGACGGCCTCGGCCTGGCGCTCCTGCTGCACGTGG
ACGACACCCCGGGCCTGCAGGTGAGGAGGGGCGGCAGATGGTTCCCGCTGGACCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTGCTCACCAACGGCGAGTACAGGAGCGCGGAGCATAGGGTGTTGGTGGACGCCGAGAGAGG
CCGGGCAACCGTGGTGATGTTCCAGGACGCGTGCGTCGCCGGGACGGTGAGGCCGCTCCCGGGGCTCGGCGAGGCCAGGT
ACAGGGCGATCGAGTATGGTGAGTATGTCAAGGGGAATTTCAGGGCCCTCGTTGAAGGGACCAGGTTCGTGGATAGTCTC
CGGACCAAT-----------------------------------------------------------------------
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>chr1A_253
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-------------------------ACCGGAGGACCGATGGAG---ATCGACGACGACGTCGTCGTCACCAGGGCCGAGA
TCACGGACGCCGCGGAGGCCACGTTCGCGGACTCCACCGTGATCCCCGACAGGTATGCCCGGCCGGACGAGGTCGGGGAC
GGGGTCGTCGTCGGCGGCGACGACGAGAGCCACGAGCTGCCGCTCGTTGACATGGCGAGGCTGCTCGACTCGGAGTCCTC
GGAGGCGGAGACGGCCAAGCTTGGCTCCGCGTGTCGACACTGGGGCTTCTTCCAGGTCAGG---CATCCTTAATACTACC
CTTTT--TCGTAT-------------------------------------------------------------------
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-------AAGAGCGAATTTGCATTCGCATTATACTTCT--CTGGGTATCCAATCTAC-----ACATTCTT-CGGT-----
--------------------------TTTGCAGCTAACAAACCACGGAGTCGACGAATCGGTTGTGCAAGGCATGAAAGA
CAGCGCTATGCAGTTCTTCCGCTTGCCGCTGGAGAAGAAGAACGCACTGGCCGTCCACGCCGGCAGCTTGGGAGGGTTCG
GGCACCACTTCACCGGATCATCCCG---C---AAGCTGGACTGGGCAGAGAGCCTCATCCTCGCCACGCAACAGAACGGG
CAAACGAGCATGGACCTCTGGCCCGCCGACCCGCCAACATTTGGGTCATTTT----------------------------
-------------------------------------------------------TTCATTTAAACATTTGGGTCTTCTT
TTCAAG-----CGTCACACGCCCA-----TTACTGCTCTGTTTGCTTC---------GTCTCATTCGCCCGCCTGCTTAT
AACAC-----CAGGGATGCGCTTGAGAAGTACTCGCTCGAGATGTCTGGCCTCACGAGGCGCCTCCTGGGGTTCATGGCG
AGCGACCTCGGAGTGGAGCGGGAGGCGCTCGACGGGGCCTTCCGTGGCAAGACGCAGAGCGTCGCCATGCACCACTACCC
TCCGTGCCGGCACCCGGACAAGGTGATAGGCATCACGCCGCACCATGACGGCCTCGGCCTGGCGCTCCTGCTGCACGTGG
ACGACACACCCGGCCTGCAGGTGAAGAGGGACGGCAGGTGGTTCCCGCTGGACCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTCCTCACCAACGGCAAGTACAGGAGCGCCGAGCATAGGGTGTTGGTGGACGCCGAGAGAGG
CCGGGCGACCGTGGTGATGTTCCAGGACGCGTCCGTCGCCGGGACGGTGAAGCCGCTCCCGGGGCTCGGCGAGGCAAGGT
ACAGGGAGATCGAGTACGGTGAGTATGTCAAGGGGAATTTCAGGGGGCTCGCTGAAGGGACCAGGTTCGTAGACAGCCTC
GAGATCAAT-----------------------------------------------------------------------
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>chr1D_257
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-----------------------------GAGGACCGATGGATCGCATCGGCGACGAGGTCGTCCTCACCAGGGCCGAGA
TCACGGATGCTGCGGCGGCCACGTTCGCGGACTCCACCGTGATCCCCGACAGGTACGCCCGGCCGGACGAGGTGAGGGAC
GGGGTCGTGGTGGGCG---ACGACGAGAGCTACGAGCTGCCGCTCGTAGACATGGCGAGGCTGCTCGACTCGGAGTCTTC
GGAGGCGGAGACCGCCAAGCTTGGCTCCGCGTGTCGAGACTGGGGCTTCTTCCAGGTCAGGAGGCATCCTTTATACT---
--TTTCTTCGCATATATAGAG-----------------------------------------------------------
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------------------------------------------------------GGA-----------------------
-------------------G-----------------TACGTATGTATCAAATCTAC-----ACGCTCTT-CG-------
--------------------------TCTGCAGCTAACAAACCACGGAGTTGACGAATCGGTTGTGCAAGACATGAAAGA
TAGCACCATGCAGTTCTTCCGCTTGCCGCTGGACAAGAAGAAAGCAGTGGCCACCCAGGCCGGCGGCTTGGAGGGGTTTG
GGCACCACTTCGCCGGAGCATCCTGCGAC---AAGCTGGACTGGGCAGAGAGCCTGATCCTCCTCACGCAGCAAAAGGAG
CAAAGGAGCATGGAGTTCTGGCCGGCCGATCCGGCAACACTCAGGCCCT-------------------------------
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------------------CACTGGACAAGTACTCGCTGGAGATGTCGCGCCTCACGAGCCGCCTCATGGCGTTCATGGCG
AGCGACCTCGGGGTGGAGCGGGAGGCGCTGGCCGGGGCCTTCCGGGGCAAGAGGCAGAGCGTGGCCCTGCACCACTACCC
TCCGTGCCGGCACCCGGACAAGGTGATGGGCATCACGCCGCACCACGACGGCCTCGGCCTGACGCTGCTGCTGCACGTGG
ACGACACCCCCGGCCTGCAGGTGAGGATGGGCGGCAGGTGGTTCCCGCTGGACCCGCTGCCGGGCGC-----TCGTCAAC
GTCGGCGACATCCTCCAGATCCTGACCAACGGCACGTACAGGAGCGCCGAGCACAGGGTGCTGGCGGACGCCGAGCGAGG
CCGGGCGACCGTGGTGGTGTTCCAGGACGCGTGCGTCGCCGGGACGGTGAGGCCGCTCCCGGGGCTCGGCGAGGCCAGGT
ACAGGGCGATCGAGTACGTTGAGTACCTCAAGGGGAACTACAGGGGGCTGGCTGAAGGGACCAGGTTCGTGGATAGCCTC
GAGA----------------------------------------------------------------------------
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>chr3A_290
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-----------------------------------------------------------------TCAGCAGGGCCGAGA
TCACGGACGACGCGTCGGCCACGTTCGCAGACTCCACTGTGATCCCCGACAGGTATGCCCGGCCAGATGAGGTCAGGGAC
GGGGTAGTCGTGGGCA---GCGACGAGAGCTACGAGCTACCAGTTGTAGACATGGCGAGGCTGCTAAACCCGGAGTTCTC
GGAAGCCGAGATTGCCAAGCTTGGCTCTGCGTGTCGAGACTGGGGCTTCTTCCAGGTTCTTATCTTTGCTCGCA------
------TTTGCATATATCTACCACTATTTGGAGGGAGGGCATTTCACTCGTGCCTTTGATATTCGTGTA-----------
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--------------------------CTAGTTCTTAATGGTGAGTGCGAGATCTTGCTGGTTAGGACATATTAATTTCTG
TAATTTC-------------------------------------------------------------------------
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-----------------------TAGAGAGTGGTCCGGAGTGTAGACCATGGTTCTAGACAACATTTTTGGATGCATGTT
GGTACAAACTTTCGCTTGAGTTGGGTTGAAATCCAGCCAAAATTTTAGGAAACCTGATGAAAGTTTTCATATTTTTTATT
CTGATCCAAGTCATGAGGTGGTGAATATTTCTTTTTCTTTTTTACAAAAAGTAAATTTTTTTTGGCATACCTACTGTCTT
ACTGAAATGACTGGAAACATGGAAAAAAATTTGTTGGACTGAAATCCAACCAGAATTCTAGGAAACCTGACGTAAGTTTT
GGTACTCTTTATTCAGCTCCAAGTTCTGTGCTAGAGAATT----------------------------------------
-------ACGTTGACAAGAAATTCAAATATTTTTGTATA---TCTAACTATCCTACTAAAATGACTGATTTTTTTTCGAA
GTTCAGGTGAAATTTCACTGAAAATGAGAACCAT----------------------------------------------
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---GCCCAGACACCATGTGAACTGGCTACACTCTAATTTGTTGATCTATCTACTGGA-----------------------
-------------------C-----------------TATCCATCTATCAAATTTAC-----ATCCTCTGTTTGTCGCAA
AATAAAATAAAATTACATCCTCTGTATTCGCAGTTAACAAACCACGGAGTTGACGAAGCAGTTGTAGAAGACATGAAAGA
TAGCACTCTGCAATTCTTTCGCTTGCCGCTGGAGAAGAAGAAGGCAGTGGCCATCCAAGCCAATGGCTTCGAAGGGTTTG
GACACCACTACAACAGAGCATCGTCTGAA---AAGTTGGACTGGGCGGAGAGTCTAATCCTCGTGACGCAGCCACACGAG
CAAAGGAACAATGAGTTTTGGCCTGCCGATCCGTCAACATTTAGGTCCTAATTCTCTTCATCTCTTGCTT-AAATTATTT
ACATGCTGC-----------------------------------------------------------------------
-------------------------------ATTGCTCCGTTTGCCTC---------GTCTTAAATTACATAA-----AC
ACATATCATTCAGGGATGCACTTGACAAGTACTCAATGGAGATGTCAAATCTCACAAGCCGCCTTACGGTGTTCATGGCG
AGCGACCTCGGAGTCGAGCAGGAGACGCTCATGGGAACCTTCCAGGGCAAGACGCAGAGTGTTGCCTTCCACTACTACCC
TCCATGCCACCACCCGGACAAGGTGATCGGCATCACGCCACACCACGACGGCCTCGGCCTGACGCTGCTGCTGCACGTGG
ACGACACCCCCGGCCTGCAGGTGAGGAAAAACGGCAGATGGTACCCGCTGAACCCGCTGCCAGGCGCCTTCGTTATCAAC
GTCGGCGACATTCTCCAGATCCTGACCAATGGCACGTACAAGAGCGCCGAGCACAGGGTGCTGCCGGACGTAGAGAAAGG
GCGGGCCACCGTGGTGATGTTTCAGAATGCTTGTGTTGCCGGAATTGTGAAGCCGCTCCCGGAGCTAGGCGAGGCGACGT
ACAAGGCCATCGACCATGTTGAGTATGTCAAGGGGAACTTCAGGGCGCTGGCTGAAGGGACAAGGTTCGTGGATAGTCTC
AAGATCA-------------------------------------------------------------------------
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>chr3D_290
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-----------------------------------------------------------------TCAGCAGGGCCGAGA
TCACGGACGCCGCGTCGGCCACGTTCGCCGACTCCACTGTGATCCCCGACAGGTATGCCCGGTCAGATGAGGTCAGGGAC
GGGGTCGTCGTCGGCA---GCGACGAGAGCTACGAGCTACCGGTTGTAGACATGGCGAGGCTGCTTCACCCGGAGTTCTC
GGAAGCCGAGATCGCCAAGCTTGGCTCTGCGTGTCGAGACTGGGGCTTCTTCCAGGTTGTTATCTTT----GCT------
------TTCGCATATATCTACCATTGTTT-------------------------TTTGATATTCGTATA-----------
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--------------------------CTACTACTCCCTCCGTCCTATAATATAAGAACGTTTTTCAAGCT---ATTTCTG
TAATTTC-------------------------------------------------------------------------
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-----------------------TGGAGATCCTCTAGCCCGCCAGATGCA-----------------------------T
GGTAGAAACTTTCGCTTGAGTTGACC-GAAATCCAGCCAAAAAATTTGGAAACTTGATGAAAGTTTTCATATTCTTTAGG
AAACTT--------------------------------------------------------------------------
---------------------GAAAAAGAATTGTTGGACTGAAAT-CAACCAGAATTCTAGGAAACTTGAAGTAAGTTTG
GGTATTCTTTATTCAGCTCCAAGTTCTGTGCTATAGAAAT----------------------------------------
-------ATGTTGACAAAAAATTCAAATATTTTTTTATTATTTCCAACTATCCTACTAAAATGGCTGGG-TTTTTTCGAA
GTTCTGGTGAAATTTCCATGAAAATGAGAACCAT----------------------------------------------
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---GCCCAGACACCATGTGAACTGGCTGCACTTTAATTTATTGATCTATCTACCGGA-----------------------
-------------------C-----------------CATCCATCTATCAAATTTACATCCTATCCTCTGTTTGTCGCAA
AATAAAATTAAATTGCATCCTCTATATTCGCAGTTAACAAACCATGGAGTCGACGAAACAGTTGTACAAGATATGAAAGA
TAACACTCTGCAGTTCTTTGGCTTGCCGCTGGAGAAGAAGAAAGCAGTGGCCATCCAAGCCAATGGCTTCGAAGGCTTTG
GGCACCACTACAACAGAGCATCGTCTGAA---AAGTTGGACTGGGCAGAGAGTCTAATCCTCGTGACGCAGCAACACGAG
CAAAGGAACAATGAGTTTTGGCCTGCCGATCCATCAACATTTAGGTCCTAATTCTCTTCATCTCTTGCTT-AAATTAATT
ACATGCTGC-----------------------------------------------------------------------
-------------------------------ATTGCTCCGTTTGCTTC---------GTCTCATTCGCGGGCGTACATAC
ACATATCATTCAGGGTTGCACTTGACAAGTACTCAGTGGAGATGTCAAATCTCACAAGCCGCCTCACGGTGTTCATGGCG
AGTGACCTCGGCGTTGAGCAGGAGGCGCTCATGGCAACCTTCCAGGGCAAGACGCAGAGTGTTGCCTTCCACTACTACCC
TCCGTGCCGCCACCCGGACAAGGTGATCGGCATCACGCCGCACCACGACGGCCTCGGCCTGACGCTGCTGCTGCACGTGG
ATGACACCCCCGGCCTGCAGGTGAGGAAAAACGGCAGATGGTACCCGCTGAACCCGCTGCCAGGCGCCTTAGTTATCAAC
GTCGGCGACATTCTCCAGATCCTGACCAATGGCACGTACAAGAGCGCCGAGCACAGGGTGCTGCCGGACGTCGAGAAAGG
GCGGGCCACCGTGGTGATGTTTCAGAATGCTTGTGTTGCCGGAATTGTGAAGCCGCTCCCGGAGCTAGGCGAGGCGACGT
ACAAGGCCATCGACCATGTTGAGTATGTCAAGGGGAACTTCAGGGCGCTGGCTGAAGGGACAAGGTTCGTGGATAGTCTC
AAGATCA-------------------------------------------------------------------------
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>chr1A_293
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--------------------------------------------------------------------CCAGGGCCGAGA
TCACGGACGCCGCGGCGGCCACGTTCGCGGACTCCACCGTGATCCCCGACAGGTACGCCCGGCCGGACGAGGTGAGGGAC
GGGGTCGTGGTGGGCG---ACGACGAGAGCTACGAGCTGCCGCTCGTAGACATGGCGAGGCTGCTCGACTCGGAGTCCTC
GGAGGCGGAGACCGCCAAGCTTGGCTCTGCGTGCCGAGACTGGGGCTTCTTCCAGGTCAGG---CATCCTTCATACT---
--TTTCTTCGTATATATGGAG-----------------------------------------------------------
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------------------------------------------------------GGA-----------------------
---------------ATTTGATTTCGCATTATTATG-T--GTATGTATCAAATCTAC-----ACGCTCTT-CG-------
--------------------------TCTGCAGCTAACAAACCACGGAGTCGACGAATCAGTTGTGCAAGACATGAAAGA
TAGCACCATGCAGTTCTTCCGCTTGCCGCTGGACAAGAAGAAAGCAGTGGCCACCCGGGCCGGCGGCTTGGAAGGGTTCG
GGCACCACTTCGCCGGAGCATCCTGCGCC---AAGCTGGACTGGGCAGAGAGCCTAATCCTCCTCACGCAACAAAAGGAG
CAGAGGAGCATGGAGTTCTGGCCGGCCGATCCGGCGA-------------------------------------------
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------CACTCAGGCCCTCACTGGACAGGTACTCGCTCGAGATGTCGCGCCTCACGAGCCGCCTCCTGGGGTTCATGGCG
AGCGACCTCGGGGTGGAGCGGGAGGCGCTGGCCGGGGCCTTCCGGGGCAAGAGGCAGAGCGTGGCCCTGCACCACTACCC
TCCGTGCCGGCACCCGGACAAGGTGCTGGGCATCACGCCGCACCACGACGGCCTCGGCCTGACGCTGCTGCTGCACGTGA
ACGACACCCCCGGCCTGCAGGTGAGGAGGGGCGGCAGGTGGTTCCCGCTGGACCCGCTGCCGGGCGCCCTCGTCGTCAAC
GTCGGCGACATCCTCCAGGTCCTGACCAACGGCAGGTACAGGAGCGCCGAGCACAGGGTGCTGGCGGACGCCGAGAGAGG
GCGGGCGACCGTGGTGGTGTTCCAGGACACGTGCGTCGCCGGGACGGTGAGGCCGCTCCCGGGGCTCGGCGAGGCCAGGT
ACAGGGCGATCGAGTACGTTGAGTATCTCAAGGGGAATTACAGGGGGCTGGCTGAAGGGACCAGGTTCGTGGATAGCCTC
GAGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1A_329
--------------------------------------------------------------------------------
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------------------------TCGCGGACTCCACTGTGCTCCCCGACAGGTATGCCCGGCCGGACGAGGTCGGGGAC
GGGGTCGTCGTGGGCG---ACGACGAGAACTACGAGGTGCCGCTGGTAGACATGGCGAGGCTGCTCGACCCGGACTCCTC
GGAGGCGGAGACGGCCAAGCTCGGCTCTGCGTGTCGAGACTGGGGCTTCTTCCAGGTCAGA---CATCCCTATTTCGAAG
TTTAATTTGACGAAAATGCAAATATTTTGGCATGCTCCTAGTAGCTAGTAAACCGGCTGATGTTAGGGATTTATAAACCG
CCTTGTCAGCCGTTGATTTGGTTTGACTTGGGCCGTTTGATCTCTAGACCAGCTAGCTATCGGCTATCTGCACAGCATCC
TCGTTTCTCCAGGTTGCGGCAGCCCCGTCACAGACTCACAGGTCATCTCACGGGAAACCGCCCACGAGGTCGCCATGCAC
GGCCACAGGTGCAGCGCCAGGTTGCGACAACGACGCTGCTGCAACCATCCATTGAAGCACCGGCGATGTTCCGGCAGCCC
GACAATGCTCCAACACAATACCGGTGATGCTTCGTTGCAGTACCGGCGATGCTCCAGCGGCCGGCAATGCTGGAACACAA
CACCGGTGATGCTTCGTTGCAGCACCGGCGATGCTCCGGCGGCTCGGCAATGCTCCAACATAACACCGGTGATGCTTCGT
TGCAGCACCAGCGATGCTCCGTCGGCCCAGCAATGCTCCAACACAACACCGGTGATGCTTCGTTGCAGAACCTGCGATGC
TCCGGCGGCCCGGCAATGCTCCAACACAACAACGGTGATGCTTTGTTGCAGCACCGGCGATGCTCCGACGGCCAAGCAAT
GCTCGAACACAACACCAGTGCTGCTTCGTTGCAACACCGACGATACTCCGACGGCCCGGCAATGCTCCAACACAACACCG
CTGATGCTTTGTTGTAGCAGCGACGATGCTCTGACTGCTCGGAGATGCTTCATTGCAGCAATGATGGTGTTCCGGCGGCC
TCGATGATGCTCCGGTGATGCTCTGCAAAGCTCCATCCCTGCAACGGCGATGTTCCGGCTGCCCCCGACGACGAGATTTT
TTACGGTACATCATACTACCGAAATTAGTGGGTAGTATTAAGTCGATCCAACGGTTATTATGCTGCAGTTTTAAATTTAA
CTGAAGGACAGATATGTAATTTCCCTTGGTCGTTTCACAACGCCACGCACTGGAGCGACCTCGCCGAAATCCTGACGCGG
CCTGCCCGCCTCCATCAGGCAGCTGCCTCCCTCTACCAACCTCCCATGATACAAGGAGCACCAACACGACGGCAAGATGG
CATGTCGCCTCGAGGAGCCCTGCGAGATTAACCATGGCGTGCTCGACTGCTCGCGTCTCGCTCAGCCCTCCTGGTGCATC
AATCTCTGTTAGCACAACCCCATACACGAAATACCTTCCGGCATATACTTGTACGACTTGATTTGCCGATGCTTTTGATC
GAGAGACACACACAAACGTACAAGCTGATCTCCCAAAGCAACCTGGCAGGTGGAATAGTCGAGATACAGACAAACATACA
AATTGATCTCCAGGAATCCTTGATGAACTCACGTACGAAGCTAGCTGCTCAGTTGATCTGCTACGTACTAGCCAGTACCA
GTGCACATCTCTCCGGGAAACGACGTACGGGAGCAGCGGCGCCGGTTGCCATGTCCCCCAGCGGAATTGAACATGCCAAA
TTTATCCTTCTGTCTGAAAAATACTGCTCATATTCAGGTGTAGTATTACTTCATCTGAACCCTTCATGCACAAAAATAAA
CGGCTCATATTATCTTAATGTACCGTAAAAGGTCTCACGACAAATGCTCCATCACAGCACCGTGAAGCTCTGGCGTTCTG
ACGATGCTCCGTCACAGCAAACGGCGGCCGGAGGATGCTCCATGGTAGCACCGGAGAGCCCCTGGTTGCAGTCCCGTTCG
TTCGCAGCAGCGTCCGCCGCGACATCTCACCACCTGCCGTCACCCCCCGCGAGCACCGGCGAACGTCAGCTCGCAGTGGT
GTCGAGGCGCTCGTAAAAATGTTTTTCCTCCACTCAAAGCACTGCAGCGTGGTTTTGTAGCAGCGGTGCTCTCGTTGTAG
TCCATGCAGCGCAAGTCAGCTTGAGCGAGGGAGTAGTGGCGGAGGAGCGTGTGAAGACATGCCGGCGACGTCCAAAAGGA
TGTAGTCAACGCGTGTGGGTGGAAGAAGAACGAGTGGAGGGGCTTCGCTGCATGAGATAAGGCAGAGGAGGTTGAGCAAT
TCCTGCGCCCACACGGGGACACGTGGCGATCCTTTGAGGCGGTTGATTTC-----------------------------G
GGTAGAAAATCAGTCGGGCAAAAGGAAGGATTTCCCCTGAATTTTTGCA-------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAGTTTT
GGCACTGAAAGCGGGGGCCCAAAAACGAGTGAATTGCAAAAAACATAGCACTTCATTCTAGGTTTGCAGGAGCCACAAAT
TTACGGAATTGTGCCAAAAAACACTAATTTTTTATAATTCTTTTGCAAAAAAACACTAGTAGCTGGCTTAGGCCGTTTTG
AGCACGATTATTAGGTGGGTCCCACCAGAAGGGGTGACGTGGCAAACAAAAGTCAATTACATCCCGTTACAATTTTTTTT
TGCAAAAGGACCCTGAGAAAAAAAAAAGCAATCGGGTCCTCTCCGTGAGATCGTGACCTTCATCTCTCACCGCCCCGGTG
GTGGACGCCGGCGGCGGGGCACAGGGGAGGTCCGGCGTTGTCTGGGACGGGCAAGAGGGCGTGGATCCAGCGGCGGTGTC
GGTTAGGACGGCGAGGCAACGGAGCTCCAGCGGCGGCTTGAGCATCAGCGGCCATGGATGAGCTCCGGCTGATCCAGCTT
GGGCATCGAGCAGCCATGATTGAGCTCCGGCGCCGTCGGCTTGAGCATCAGGCACGCATCAGAGAGAGATGGGAGAGATT
GGGGAAGGCACCGACCTCAGAGAGAGAGATGGGAGAGATAGGGGAGGGCACCGCCGGCAGAGGAGCTCACGGTCGAGGGA
CATGGACCGCACCTCCATGCCCACCGTTAGTGGATTTGCCCCGCTGATGCACAGCTCCGGCCGGAGCTCATCCATGGCCG
TCGTTGTCGCGCCTCCTCTTCACGCCTACGCGGGCCGCCGTCGCGCATCCTCTTCTCCTCGCCGGAGCCGATGCATGTGA
GCAACAAGGGGAGGCCGAGGCCGGGAAGTGGGAGGAAGATGGGGGCGGGGGAATAGAGGAGGAGAAGGAGAAGGAGGCGG
GGCGTCGCGGAGCCGTCGTCCATGCCGAGCTCGCCGGCCGGGAGCTCGTGCGCACAGCTGAGGAGATGACCTTATCCTCT
CAGGCTCTTTTCCAAATCAGTCCCTGTTATTCTGTCTATTTGCGAACCGTTATGTTGTGCCACGTCATCCCTTCTGGCAG
GACCCACCTGTCATAATCATGCTCAAAACGGTCTAAGCCAGTGACTAGTGTTTTTTGTAAAAAAATTATGAAAAAAATTA
CTCCCTCCGTTCACTTTTGTAAGACATTTTAGGCATTTAAGACAAAAAACAGTAAACGTCTTACAGAAGTGAACAAAGGG
AGTAGTGCTTTTTGGCACAATTCCGTAAATATATGGTTCCTGTAAATCTAGCCTGGAGTGTCGATATTTTTTACGATTCA
CTCGCCCAAAAACTATCTGCACTGGATGATATACTCC--GTTGATCTGTCTACGGGA-----------------------
-------------------C-----------------T--GTGTGTATCGAATTTACTAGAGT-ATTCTT-CG-------
--------------------------TTTGCAGCTAACAAACCACGGAGTTGAGGAATCAGTTGCACAAGACATGAAAGA
TAGCACTACGCAGTTCTTCCGCCTGCCGCTGGACAAGAAGAAAGCAGTGGCCACCAAGGCCGGCGGGGTCGAAGGGTTCG
GGCACCACTTCCTCGGAGCATCCCGCGGG---AAGCTGGACTGGGCAGAGAGCCTGGTCCTCAAGACGCAGCTGATGGAG
GAGAGGAGCATGGAGTTCTGGCCGGCCGATCCGGCAGCATTTAGGTCCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CACTGGACAAGTACTCGCTGGAGATGTCCAAGCTCACGAGCCGGCTCCTGGCGTTCATGGCG
AGCGACCTCGGGGTGGAGCCGGAGGCGCTCGCCGGGGCCTTCCGGGGCAAGAAGCAAACCGTGGCCCTGCATCACTACCC
TCCGTGCCAGCACCCGGACAAGGTGCTGGGCATCACGCCGCACCACGACGGCCTCGGCCTGACGCTGCTGCTGCACGTGG
ACGACACCCCCGGCCTGCAGGTGAGGAGGGACGGCAGGTGGTTCCCGCTGGACTCGCTGCCGGGCGCCCTCGTCATCAAC
GTCGGCGACATGCTCCAGATCCTCACCAACGGCAGATACAAGAGCCCCGAGCACAGGGTGCTGGCGGACGCCGAGAGAGG
CCGGGCGACCGCGGTGGTGTTCCAGGAGGCTTGCGTCGGCGGCATGGTGAGGCCGCTCCCGGGGCTCGGCGACGCGAGGT
ACAGAGCTATCGAGTATGCTGAGTATTTCGAGGGGAATTACACGGCACTGGCTGAAGGGACGAGGTTCGTGGATAGTCTC
CAGATCA-------------------------------------------------------------------------
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>chr3D_970
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----------CAGAGATGCACTTGACAAGTACGCAATGGAGATGTCAGACCTCACTACCCGCCTCATGCCGTTCATGGCG
AGCGACCTCGGGGTCGAGCAGGAGACGCTCGTGGGAATCTTCCAGGGCAAGAGGCAGAGCGTGGCCTTCCACTACTACCC
TCCGTGCCCCCACCCGGACAAGGTGATCGGCATCACGCCGCACCACGACGGCCTCGGACTCACGCTGCTGCTCCACGTCG
ACGAAACCCCCGGCCTGCAGGTGAGGAGAAACGGCACATGGTACCCGGTGAACCCGCTGCCAGGCGCCTTGGTTATCAAC
GTTGGCGACATCCTCCAGATCCTCACCAATGGCATGTACAAGAGCGCCGTGCACAGGGTGGTGGCGGACACCAAGAAAGG
CCGGGCCACCGTGGTGATGTTTCAGCATGCTTGTGTTGCCGGGCTGGTGAAGCCGCTCCCGGAGCTAGGCGAGGCAGCGT
ACAAGGCGATCGAGAAGGTTGAGTACATCAAGGGAAACTTCAGGGCGCTTGCCGAAGGGACATGGTTCGTGGATAGTCTC
AAGATCAATC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>SNPs
SSSSSS-------------S--------------S----S-------S---S----------------------------
------------S--------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------------------------S---------------------------------S-S-----------S---
---------------------------------S-------------------S-------S------------------
-----S-------------------------------------S------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
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-----------------S------S----------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
---------S-------------S------------------------------------------S--SS---------
-------------------S------------------------------------------------------------
---------------------------------S------S------SSSSSSSSSS-----------------------
----------------------S-----------------------------------------S--S------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_114
--------------------------------------------------------------------------------
--------------ATGCCCACCATCGAACCATT----------------------------------------------
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>reverse_5537
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----------------TGGTTGTGTGTTCTTGCCCT--------------------------------------------
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-------------------------------------------------------------
