>input_sequence_76827
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-----------------------------------------------------AGCTCGCCG-------------CGAAC
CAGATGCCAACGACAACGACGACGACGAATGCGAGCGGCAGCAGGGCTTGCGGGAGGAGCATGACGGCCGCGATGTCGCT
GGTATTGCTGCTGGCGCTGCTCGGCCGGCCGTCTCCGGCGACGGCGCAGCTTGGGGACGCCCACAAGTGCCGCGACACGT
GCCTGGAGGGGTGCACCGGGTGGGTGGTGGTGTGCCACATGTCCTGCGCCAGCGCCTGCGCCGGGGCCGGCGGCATCGGC
ATCATGAGCATCGACAACGGCATCCCGCCCGACCACCCCAACCCCGACGATCTCCCCAAGCCGCCGCCGCTGCCGGACCT
TCTTCACCCCCTCCGAGGAGCCGGCGGCATCGCCTTCAGCCCCGCGCCGTCACCGGCAGCATCAA------AATCATCAT
CATCGTCGTCGACATCGGATGATGATTA----ATTACTAGGCAACTAGTTAAG-CACTATCCATAGATTGGTTGCAACAA
GCAAGCATATATT-------------------------------------------------------------------
-------------------------------CTGCATTCTCTTTCAACAATTCTCTCCTCCAATGAGTC---AAATAAA-
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>chr5B_1_TraesCS5B01G568600
CTCTGGTGGATCTATCTTTGATGGATCTGCTCGGATTTGGTTGTCGTTCGCTACACTTCATCAGTGGCGGCTGTTGTTCT
GGTGCGCACCCTGTGAGGCCTTAGCATGACGACTTCCCGACACAATAAGTTTTGCCTGGCTCCAGCAAGGGAGGGGCGAT
AACGGCAGCGCGCCTTCGACTCGTTTCAGTGCTTGTAGTCATCGTTAGGTGGTCTACGAATCTTGATGTAATTTTTATTA
TTTATGGTGTTCGTTGTATTGTCATGATTGAAGATGAATAGATCATAAGTTCTCTCACAAAAAAAGAAAGAAAGAAGAAG
ATCTACGAAAATCCTTTTCTGAGCCCGGGCTCATCTGCACCCGTGTTGAATAAAAAATATAAAAAATACTAGAAGAATTC
AAAAAAAACCATGGTAGAAAATTTGATGCGTGAGGTCCGCCCCAATTTTCAAATCATTTGGACAACTGAGCATCTCTCGG
CAAAAAAAAACAAATTCGGGGTTTGTAAAACAGTTTACTGTTCATGTACTGTTTTGACCTAATTTTTCTTTTTTGCTGAG
AGCTACTCAGATATCCAAATAAGCTAATATTTGGAGCGAACCTCACGCAATAAATCGTCTACGATGAAAAAAAATTGGAA
TTTTTTGAATTTCTTTAGTATTGTTTTTGAATTTTTTCTGACTGGTGGAGATGAGCCTGGGCACCCAATCACTGCACTCG
AAAATCTACTCCTACCTCGCAAAAAAAATG-----TAGTGAGTTTTGCAGCTGAGCTGGGCTGGCTATTTAG-------G
TAGGCAAGTAAGGAATAGCATAACGCATAACTAACGCATGGTAATTGAATTGATGGACTCCTCCCTCCCAAAACA-TTTT
ACTGGCTAAGTTGGTGAACGCCCGGACGTTACGGTGGTCATGAATCCATCCTCTCCATCACCCGTCCCCAAATAAACAAG
ACAAGGCAACGCAACGCATGCATATATAAAGCAGCTAGCAGGCGGACGGAGCTAGCTCGCCG-------------CGAAC
CAGATGCCAACGACAACGACGACGACGAATGCGAGCGGCAGCAGGGCTTGCGGGAGGAGCATGACGGCCGCGATGTCGCT
GGTATTGCTGCTGGCGCTGCTCGGCCGGCCGTCTCCGGCGACGGCGCAGCTTGGGGACGCCCACAAGTGCCGCGACACGT
GCCTGGAGGGGTGCACCGGGTGGGTGGTGGTGTGCCACATGTCCTGCGCCAGCGCCTGCGCCGGGGCCGGCGGCATCGGC
ATCATGAGCATCGACAACGGCATCCCGCCCGACCACCCCAACCCCGACGATCTCCCCAAGCCGCCGCCGCTGCCGGACCT
TCTTCACCCCCTCCGAGGAGCCGGCGGCATCGCCTTCAGCCCCGCGCCGTCACCGGCAGCATCAA------AATCATCAT
CATCGTCGTCGACATCGGATGATGATTA----ATTACTAGGCAACTAGTTAAG-CACTATCCATAGATTGGTTGCAACAA
GCAAGCATATATT-------------------------------------------------------------------
-------------------------------CTGCATTCTCTTTCAACAATTCTCTCCTCCAATGAGTC---AAATAAAA
TTAATTAAACAGCACAGCTCCTTGCACTAAAATTAATATTAATATTGATCGACAACGCGCCGCGCCGCAGTTTAATTACA
CAAAATAACCCACCCTTTCTCTCTCTCTCTCTCTCTCTCCTTTCTTACTCACCTGCAAACTTGCTTGGTTCATTCATCCA
TTCATCCAGGTAAGAGGTAACATAAGTAGACTAGGTACATCCCTCCCTCCACAACAGACGGACAAAGGTAAACAAAGGTC
AAAAGCTACTAGTAGTTACTACGTAGCATGCATGTATTTGCTTGCTGCCTTGTGCTTCACTTCCAA----TCTCTCCCTC
CACAAGC----------TTCGTCTTTACAACCAATCTCTCTCCCTACTTCCACAGCTTCACCCATCTGTCGTGGCTCGCC
GACGCAATCGACCCCGTCAGCGGGGAGTGCGCCAGCGCCGCGATCAGCCCCTCGTGCGCCGCGACCACGTTCCGCTGGTT
ATCCGATACGCTCCACAGCTCCACCGTCTGCATCATCACATCACATCACACCACATGTATATATAAATAAACGTTACCCA
ACTGTCCAGGTTTAATTTGTCTCTGTTATGTTGCACGGGAAC------------------ATTATTATTCAGAATTTGCA
GCAACCATGTCAATGCTTTGCTTACCTGGTAACCACCAACGATCAAAACTTTCGGGTATCTCGGATGGAATATGCATGAC
TGGTACTGGTTCCCGTGCGACCTCAGCTCGTGGATGCACTGCCCTGACGCCACCGACCACACCTTCACGCTCTCCTGGCT
CGCCGACGCCAGATACTCCCCCGTTTCGTCCCAGCAGATGCAGTTTACCTCGCTAGTGTGAACCTAAATCATTTTAAAAA
TATTTCAATGGTGAACAACTAC-----CTCCTCACGTTGCACAAACACCTGTA-------AGAAACATCATGACCACCGT
GCAATTCTTGATTACCTTTGCCTGCGAATGTAAACTCGTGTCCGTGTCAATATCAATCATGTTCACCGTGTTTCCTGCTG
CCA
>chr5D_720
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-------------------------------------------------------------------------------G
AAAATCTACTCCTACCCGCAAAAAAAAAAAAAAACTAGTGAATTTTGCAGCTGAGCTGGGCTGGCTATTTAGAGTAGGTG
TAGGTAGGGAATAGCTAGCATAACGCATAACTAACGCATGCTAATTGAATCGATGGACTCCTCCCTCCCAAAATATTTTT
ACTGGCTCAGTTGGTGAACGCCCGGACGTTACGGTGCTCATGAATCCATTCTCTCCATCACCTGTCCCCAAATAAACAAG
ACAAGGCAACGCAACGCATGCATATATAAGC-----AGCAGGCGGACGGAGCTAGCTCGCCGGCAACGACCGCCGCGAAC
CAGATGCCAACGACGACGACAAGGGCGACCGTGA---------------------------------------T---GCT
GGTGTTGCTAATAGCGCTGCTCGGCCGGCCGTCTCCGGCGGCGGCGCAGCTGGGGGACGCCCACAAGTGCCGCGACACGT
GCCTGGAGGGGTGCACCGGGTGGGTGGTGGTGTGCCACGTGTCGTGCGCCAGCGCCTGCTCGGGGGCCGGCGGCATCGGC
ATCATGAGCATCGACAACGGCATCCCGCCGGACCACCCCAACCCCGACGATCTCCCCAAGCCGCCGCCGCTGCCGGACCT
TGTCCATCCCCTCCGAGGAGCCGGCGGCATCGCCTTCAGCCCCGCGCCGTCACCGGCAGCATCAGAATCAGAATCATCAT
CATCGTCGTCGACATCGGATGATGATTA----ATTACTAGGCAACTAGTTAAGGCACTATCCATAGATTGGATGCAACAA
GCAT--------ATGACTGACGAATGTGGTAGGCCTTCTCTCTGCGGGTATGTCTC--------ATGGATGGATGAAAAT
TCATCATATTTGCAGCCATTGCTTACTTTTACTGCATTCTCTTTCTCCATTTCTCTCTCCCACT-AAATTTAAAACAAAA
TTAATTAAATAGCACACTTCTTTCCACTAC---TAAAATTAATATTGATGGA------------CCGCGGTTTAATTACA
CAAAATAACTCGT-CTTTCTCTCAGTCAG-----------------------CTGCAAACTTGCTTCCTTGTTTCATTCC
TTCATCTAGGTAGGTACATACACCCCCTCCCCTC----------CCCTCCACAACAGACGGTCAAAAG------------
---------------------------ATGCATGTATTTGCTTGCTGCCTTGTGCTCCAGTTCCACAGCTTCTCTCCCAC
CACAAATATGCTCAAAGTTCGTCTTTACAACCAACCAATCT-CCTACTTCCACAGCTTCACCCATCTGTCGTGGCTCGCC
GACGCGATCGACCCCGTCAGCGGGGAGTGCGCCAGCGCCGCGATCAGCCCCTCGTGCGCCGGGACCACGTTCCTCTGGTT
ATCCGCCACGCTCCACAGCTCCACCGTCTGCATCATCACATCGAATC-----ACATGTATATATAAA----CGTTACCCA
ACTGTCCAGGTTTAATTTGGCTCTGTTATGTTGCACAGC-AC------------------ATTATTATTCAGAATTTGCA
GCAACCATGTCAATGCTT-GCTTACCTGGTAACCACCGACTATCAAAACTTTCGGATATCTCGGATGGAATATGCACGAC
TGGTACTGGTTCCCGTGCGACCTCAGCTCGTGGATGCACTGCCCTGACGCCGCCGACCACACCTTCACGCTGTCCTGGCT
TGCGGACGCCAGGTACTCGCCCGTTTCGTCCCAGCAGATGCAGTTTACCTCGCTAGAGTGAACCTATTTTTTTTTAAACA
AAA--CAATCATCAACAGTTAC-----CTCCTGACATTGCAGAAACACCTGCATACAGGTAGAAGCATCTCGACCAGCGT
GCAATTCTTGATTACCTTTGCCTGTGAATGTAAACTCGTGTCCGTGTCGATATCGATGATGTTCACCGTGTTTCCGGCTG
CCA
>chr7B_780
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----------------------------------------------------------------CTATTTAG-------G
TAGGTAGGGAATAGCATATACCG-GCATAACTAACGCATGCTAATTGA-----TGCACTCTTCCCTCCCAATA----TTT
ACTGGTTCATTTGGTGAACGCCCGGACGTTACGGAGCTCATGAATTCATCCTCTCCATCACCTGTCCCCAAATAAACAAG
GCAAGGCAAGGCAACGCATGCATATATAAGC-----AGCAGGCGGACGGAGCTAGCTCGCCGGCAAACACCAAATCGAAC
CACATGCCAACGACGACGACGACGGCGACCA------GCGGCAGGGGTTGCGGGAGGAGCATGACGGGCGCGTT---GCT
GGTGTTGCTACTGGCGCTGCTTGGCCGGCCGTCTCCGGCGAGGGCGCAGCTGGGGGACGCCCACAAGTGCCGGGACACGT
GCCTGGAGGGGTGCACCGGGTGGGTGGTGGTGTGCCACATGTCGTGCGCCAGCGCCTGCGCGGGGGCCGGCGGCATCGGC
ATCATGAGCATCGACAACGGCATCCCGCCGGACCACCCCAACCCCGACGATCTCCCCAAGCCACCGCCGCTGCCGGACCT
TGTCCATCCCCTCCGAGGAGCCGGCGGCATCGCCTTCAGCCCCGCGCCGTCACCGGCAGCATCTTCCTCAGAAT------
------------CATCGGATGATGATTAAGAGATTACTAGGCAACTAGTTAAG-CACTATCCATAGATTGGTTGCAACAA
GCAAGCATATGGATGACTGACGAATGTGGTAGGCCTTCTCTCTGCGGGTATGTCTAATGGATGGATGGATGGATGAAAAT
TCATCATATTTGCAGCCATTGCTTACTTTTACTGCATTCTCTTTCAACAATTCTCTCTCCCACTAAATTTAAAAACAAAA
TTAATTAAATAGCACGCTTCTTTCCACTAA---TAAAATTAATATTGATGGA---------------CGGTTTAATTACA
CAAAATAAGTAGTTAC----------------------------------------------------------------
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-----------------------TAGCATGCATGTATTTGCTTGCTGCCTTGTGCTTCACTTCCAA----CCTCTCCCCC
CACAAGC----------TTCGTCTTTACAACCAACCAATCT-CCTACTTCCACAGCTTCACCCATCTGTCGTGGCTCGCC
GACGCAATCGACCCCGTCAGCGGGGAGTGCGCCAGCGCCGCAATCAGCCCCTCGTGCGCCGGCACCACGTTCCTCTGGTT
ATCCGCCACGCTCCACAGCTCCACCGTCTGCATTATCACATCGCATC-----ACATGT----------------------
----------------TTGCCTCTCTTGTGCTATACACC-ACCTTATTATTATTATTATTATTATTATTCAGAATTTGCA
GCAACCATGTCAATGCTT-GCTTACCTGGTAACCACCAACGATCAAAACTTTCGGGTATCTCGGATGGAATATGCATGAC
TGGTACTGGTTCCCGTGCGACCTCAGCTCGTGGATGCACTGCCCTGACGCCACCGACCACACCTTCACGCTGTCCTGGCT
CGCCGACGCCAAATACTCGCCCGTTTCGTCCCAGCAGATGCAGTTTACCTCGCTAGTGTGAACCTAAATAATTTTAAAAA
TAATTCAATGGTGAACAACTACCTCCTCTCCTCACGTTGCACAAACGACCGC-------------------------CGT
GCAATTCTTGATTACCTTTGCCTGCGAATGTAAACTCGTGTCCGTGTCGATATCAATCATGTTCACCGTGTTTCCTGCTG
CCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------------SSSS--------SS-----------S--------------------------------------
----S-S-S--SSSS-------------------------S---------S----------------------S------
-------S----------------------------S-------------------------S-----------------
-----------------------------SSSSSSS--------------------------------------------
--------------S---------S---SS-S--SSS--S------S--------------------S----S-SSS---
---S-----S-----------------------------------------S----------------------------
-------------------------------------------S-----------------S------------------
-----------------------------S--------------------------------------------------
-S-S--S---------------------------------------------------------S---------------
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----------SSS-------------------------------------------------------------------
---------------------------------------------------------SS---S-S-S-S------S----
---------S------SS--S--S------SSS---S------------S--SSSSSSSSSSSS----S-----------
---------S-SSS---------SS--SSSSSSSSSSSSSSSSSSSSSSSSS--------------SS--SS-----S-S
------S-----S-SSSSS---SSSSSSSS-SSSSSSSSSSSSS-----------------S----S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------S-
----------------------------------S-SS---S--------------------------------------
-------------------------------------------------------------S-----------S------
-----SS-----------------------------------S----SSSSS---------------SSSS---------
-------------------S----------------S-SS----------------------------------------
------------------S-------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------S--------------------------------------------------S----------
--S------------------------------------------------S------------S----SS-----S---
------------------------------------------------S-------------------------------
---
>forward_349
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---------AATCCTTTTCTGAGCCCGGG---------------------------------------------------
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>reverse_1873
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--------------------------------AGGTACATCCCTCCCTCCAC----------------------------
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