>input_sequence_76820
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------------------------ATGGCGAAACCCACAAGCCAGTCGGCGGCAGCGCTCGCCATCCTGATGCTCGCCGT
GGCCA------CCCTCGCTGTCGCCCAGGCGCCGCCGCCGCCCCAACGGAGCGGCCAGGAGCGTCACCTGTTCCAGGTGA
CGGTTCGCGAGGTGGACGGCGCCGTGGAAGACGACTACAACTACAA---------CCTGCTCGGCACCGTGCTCGGCGGG
TTGGTCGCCTCGCCC-TGTTCCTCCTGAACCCCTACCTCTCCAGGCTACATTTCTATGCCATTTTCTGACGCTTCTCTAT
CTTGTTTTCTCTCTGAAACCTCAAGCTACGAGGCCGCACGGGGCGTCATGTTTGAGACCGAGCCCCTGAGGTTCAGCGCC
TACCTCACCAACAACCAGGCCCGCAGGCTATCAAGTGAGTGAACATTCCTGGCTTGCTTCATC----CTAGCTAGGAAAA
CAGAGATATTTGATGTGTAAG-TATATACGTTCTGGTTGAGCAGGAGTCAAGGGGGTGCTCGGAGTTCGTCAGAGGGACG
ATCCTGTGCCCAGGGCCAA------GCACTGA------------------------------------------------
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>chr2D_1_TraesCS2D01G444800
GGAGTTGGCGGTATTGCTCTGATTAAGCAAGAACAACTTTTGAACCACAAAGCTTTACATGTCTCCGATGTCTGAGCTAG
TTTTCTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAATAGTGATCTAAACGCTCTTATATTAGTTTAC
AGAGGGAGTACTTCATTAATTGCCCTTTCTTAATTTTCAGAGAGGTGCTTTTATGAAATAGCGATT-GATTAATTGTTGC
ACTGGTTTTGTTTACTGCTTTGATAATACAGCTGCTATGCCCAGTCGGAACACGAGAAACGTTGAAGCGGATAGAGGAGT
TGCCCCCGGCCCGTGAGCCGCATTATCGTCTGAAGACGTTACTGATGAC-GGAGTCTACAGCTACAACAACTTCTTTGTT
CTGGCACTGCATTATGCTCGAACCGCCATGGCGCTCGAGCGCATGGTCATCGATCCGGAGGCGAGGAAGAGGTATGTCGC
GACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGAGGGCCGACGGATGGCCGATGAACACCTTCGGGGACGGGGGTTGG
ATGGCATCCTCACCATCTTGTAACATCGACCTGACTTTTCTGGAACATGATATCGTGACTCGTTTGTAAAATTCGCAAAT
GTTTTCTGTTAAGAAGTTCACAAGCAC---------AGATAATTGCCACACCACCCTGAAAAACGGCCAGCTGAATCTAT
GTAACTT-------------------------------------------------------------------------
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----------------------------------TTCTTTTTTTGCGGGGG-----------------------------
---------------------------------------------------------------AGCTGAATCTATGTAAC
TGACTGCCTGTAAGCTACTTG---------TGCAGTGCACACACTGCAGTTGTGCATGTCTTAGATCTCGCATTAACAGG
CACCG-AAAACGTCAGCCGTAATGACCATTGAACCATCTTA----AAATGGGATCCACGTAACAGTTGAAACCCCCCGGA
CGAGAGCGCCTATAAAACCCTCCCAGTTCACGTCCCTTTCCCCCAAGATCACCAACAGCGAGACCGATCTCTTTCTCTTC
AGCTACCGCAACGCACCGGCAACCATGGCGAAACCCACAAGCCAGTCGGCGGCAGCGCTCGCCATCCTGATGCTCGCCGT
GGCCA------CCCTCGCTGTCGCCCAGGCGCCGCCGCCGCCCCAACGGAGCGGCCAGGAGCGTCACCTGTTCCAGGTGA
CGGTTCGCGAGGTGGACGGCGCCGTGGAAGACGACTACAACTACAA---------CCTGCTCGGCACCGTGCTCGGCGGG
TTGGTCGCCTCGCCC-TGTTCCTCCTGAACCCCTACCTCTCCAGGCTACATTTCTATGCCATTTTCTGACGCTTCTCTAT
CTTGTTTTCTCTCTGAAACCTCAAGCTACGAGGCCGCACGGGGCGTCATGTTTGAGACCGAGCCCCTGAGGTTCAGCGCC
TACCTCACCAACAACCAGGCCCGCAGGCTATCAAGTGAGTGAACATTCCTGGCTTGCTTCATC----CTAGCTAGGAAAA
CAGAGATATTTGATGTGTAAG-TATATACGTTCTGGTTGAGCAGGAGTCAAGGGGGTGCTCGGAGTTCGTCAGAGGGACG
ATCCTGTGCCCAGGGCCAA------GCACTGATACCGCAGGTGATTAACAGAGACATGAGCAGCATCAAAGGAAGGAAGC
AACGCATTAGCTTTCCTTTT-CTCTTTCACAAT--AAAAA---GTGCCGCGGCCTTAATATTTGGAAACGTTGTGCTATA
CTGAAATCCAGCAAGCTTTGCTGCTATAAACCTCTCGCACAAAACTGACGATCCTCGATGTAAA-AACAAGATGATCTAC
GGTGT--------------------------------------------------------TCGGTTTCAAAAAAGAGAG
TTGTAAGTGTGACTGTCAATACTATCTGAAACTGTTAAACGGCAGAGGACAAAAACCTGTTTGACATTAGCCAAAACCAG
TGCTCGCCCTGGCATCATCTCATGAAAAAAGTCTGATTCATGATCGTCGCTCTTCTTTGGTCCAGC---CTCTCTAGACG
AAGTCGGGGTCAACAGTGTGCTGCTTGCACCCTCGGGGGCCGTAGTGCTCCTTGCTCTTTCGCACCACCGTGTGGCACAG
AGCGCAGTAATGAACCCGGCATGTCTCGCAGAAGATGTGGTTGTTGTTCCCAACCTGCTTAGATCAGAGACTGTCTTCAT
CCACCAGAATCATCAAGAGAAAAAAAG-AGTAGAAAGCACTAGAGCTATCTTCAGAACACACTACTGAAAAATATCACTA
TTCCATACATGATAC-----------------------------------------------------------------
--------AGTATATGGAAGCCACCAAACCTTTACCTTGAAATTCGGCTGGCGGCAACCCGGGCACGGATGCGCTCTGGA
CAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACAACATCATTCACTTCTACCTTCACTCTTAGCTTCTCCCTATCGA
TTTTGCATTGTTCACTGTCAAAAGGGAGCATTGGTTTCAGAATTAGTTATCCAGAGAATAGATATGCTACATGATGCTTG
ACAGATCACACTTAACAAGGGGACATCACAAGATAATATGTACCTTGTATGACCTTGACTTGATGGCTTGCCACAGGCAT
AACAGAACGACTTCTCACAGTTTCTGCAAAGCATCTGGTCGCAGCCTGACAC
>chr2B_169
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--------TACTACATTAATTGCCTTTTTTTTGTTTCCAGAGAGGTGCTTTTATGAAATAGGGTAGAGATTAATCGTTGC
GCTGGTTTTGTTTAATGCTCCGATAATGCAGCTGCTATGCCCAGTCGGAACACAAGAGACGTTGAAGCGGATAGAGGAGT
TGCCCCCAGCCCGTGAGCCGCATTATCGTCTGAAGACGTTACTGATGACGGGAGTCTACAGCTACAACAACTTCTTTGTT
CTGGCACTGCATTATGCTCGAACCGCCATGGCGCTCGAGCGCATGGTCATCGATCCGGAGGCGAGGAAGAGGTATGTCGC
GACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGAGGGCCGACGGATGGCCGATGAACATCTTCGGAGACGGGGGTTGG
ATGCCATCCTCACCATCTTGTAACATTGACCTGACTTTTCTAGAACATGATATCATGACTCGTTTGTAAAATACGCAAAT
GTTTTCTGTTCAGAAGTTCAGAAGTTCAGAAGCACAAA-TAATTGTTACACCCCCTGAAGCTAG----------------
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--------------------------------------------------------------CAACTGGATCTACGTAAC
TGACTGCCTTTAAGCTACTACTTGTACTGCTGCAGTGCACACACTGGAGTTGTGCATGTCTTAAATCTCGCATTAACAGG
CACCG-AAAACGTATGTCGTAATGACCATTGAACCATCTTA----AAATGAGATCCACGTAACAGTTGAAACCCCCCGGA
CGAGAGCGCCTATAAAACCCTCCCAGTTCACGTCCCTTTTCCCCAAGATCACCAGCAGCGTGACCGATCTCTTTCTCTTC
AGCTGCCGCAACGCACCGGCAACCATGGCGAGACCCACAAGCCAGTCGGTGGCCGCGTTCACCATCCTGATGCTCGCCGT
GGCCA------CCCTCGCCATCGCCCAGGCGCCGCCGCCGCCCAAACGGAGCCGCCAGGAGATCCACCTGTTCGAGGTGA
CCGTCGGCCTGGCGGCCGCCGCCACGGAGGACGACTACTACCACCACCACTACCGCCTGCTCGCCACCGTGGTCGGCGGG
TCGGTCGCCTCGCCCCTGTTCCTTCTGAACCGCT-------------ACATTTCTATGCCATTTGCTGACGCTTCTCTAT
CGTGTTTTCTCTC--AAACCTCAAGCATCGAGGCCGCACGGAGCGCCATGTTCGAGACCGCGCCCTTGAGGTTCAGCGCC
TACCTCACCAACAACCAGGCCCGCAGACTATCAAGTGAGTGAACATTCCTGGCTTACTTCATCGATCCTAGCTAGGCATA
CATAGATATTTGATGTTTAAGTTACATACGTTCTGGTTGAGCAGGAGTCACGGGGGTGCTGGGAGTTCGTCAGAGGGACG
ACCCTGTGCCCACGGACGACGACGGGCACTGACACCGCAAGTGATCAACAGAGACGTGAGCAGCTTCAAAGGAAGGAAGC
AACACATTAGCTTTCCTTTTTCTCTTTCACAATAAAAAAA---GTGCCGCGGCCTTAATATTTGTGT---------TATA
CTGAAATCCAGCAAGCTTTGCTGTTATAAACCTCTCGCGCAAAACTGACGATCCTCGATGTAAAAAACAAGATGATCTCC
GGGGTTCATCAATACGACAATACGTAACATGTTCAGTTTTAACCCCGCAAAAAAAAAATGTTCGGTTTCAAAAAAGAGAG
TTGTAAGTGTGACTGTCAATACTATCTGGAACTGTTAAACGGCAGAGGACAAAAACCTGTTCGACAG-AGCCAAAACCAG
TGCTCGCCCCGGGATCATCTCACGAAAA-ATTCTGATTCATGATCGTCGCTCTTCTTTGGTCCAGC---CTCTCTAGACA
AAGTCGGGGTCGACAGTGTGCTGCTTGCACCCTCGGGGGCCATAGTGCTCCTTGCTCTTTCGCACCACCGTGTGGCACAG
AGCGCAGCAATGAACCCGGCATGTCTCGCAGAAGATGTGGTTGTTGTTCCCAACCTGCTTAGATCAGAGACTGTCTTCAT
CCACCAGAATCATCAAGAG-AAAAAAG-AGTAGAAAGCACTAGAGCTATCTTCAGAAAACACTACTGAAAAATATCACTA
TTCCATACATGATAC-----------------------------------------------------------------
--------AGTATATGGAAGCCACCAAACCTTTACCTTGAAATTCGGCTGGCGGCAACCCGGGCACGGATGCGCTCTGGA
CAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACGACATCATTCACTTCCACCTTCACTCTCAGCTTCTCCCTATCGA
TTTTGCATTGTTCACTGTCAAAAAGGAGCATTGGTTTCTGAATTAGTTATCCAGAGAATAGATATGCTACATAATGCTTG
ACAGATCACACTTAACAAGGGGTCATCACAAGACAATACGTACCTTGTATGACCTTGACTTGATGGCTTGCCACAGGCAT
AACAGAACGACTTCTCACAGTTTCTGCAAAGCATCTGGTCACAGCCTGACAC
>chr2A_227
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-------------------------------------------------------------------GATTAATCGTTGC
GTTTGTTTTGTTTAATGCTTTGATAATGCAGCTGCTATGCCCAGTCGGAACATGGGAGACGTTGAAGCGGATAGAGGAGT
TGCCCCCGGCCCGTGAGCTGCATTATCGTCTGAAGACGTTACTGATGACGGGAGTCTATGGCTACAACAACTTCTTTGTT
CTGGCACTGCATTATGCTCGAACCGCCACGGCGCTCGAGCGCATGGTCATCC------AGGCGAGGAAGAGGTATGTCTT
GACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGGGGGCCGACGGATGGCCAATGAACACCTTCGGGGACGGGGCTTGG
ATGGCATCTTCACCATCTTGTAACATCGACCTGACTTTTCTGGAACATGATATCATGACTCATTTGTAAAATTCGCAAAT
GTTTCCTGTTAAGAAGTTCAGAAGCAC---------AG-TAATTGCCACACCACCCTGAAAAACTGCCAGCTGAGAGAGA
GAAAAAGTCGAATCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGCGCGTCGGGCCTCCTCCCTCCGGGCTCCCCC
CTCCCTTCTTCCTTCTCGCCGCCGTAGCCGGTGCCCGCGGCCGGCTTGGCCCTGGGGCTGCTGGTGGCGGCGGCCTCCTG
GCCCTTCCCCTCCTGGTCGCTCTTCGGCGCGGGCGGAGCGGCTCCGGGGGGTGCATCTAGGCGGTGGGGGGCTGGCGTGG
CGGCGGGGCTCCGTGGCGCATGCAGGCGAGCTACTGGGCGGCGGCGCAGCCGTTGGCGGCGGGGCGACGCGACGGCGGGA
TCTGGCGTTGTCCGCTCGGCCCAGATCTGGGCCCTTCGGGCCCCATCTGGGCCTGAGCGGGCCGGCAGCGGGGATGGCTC
CGGTGTGGCTTCTGGGAGGCGGGGGAGATGCGACGTGTGGCTGGGTGCCGGCGGCGATGACGCCGGCCTACCGCATCGCG
GCCGGCGGGGCTTAACGGGCCTGGCTGGGCCAGGGGTGGCCCGGCATGCCCCGCTACCGCATCCGGACGGCTACCGCGAC
GGTGCCGGAGGCACGGGCCTCCCGCATGACGGCAGTGGAGGTGGTTCCCTCCCGCTCGGCGTCGATGTTGCTGCTCCCGT
CGTGGTGAGCTTCTCTCCGGTCCTCTTGGCCTCGTGGTGGTGTTCGTAGTGAGGCAGCGTGGGTGGTGGCGCTACTGCGT
TGGCGCATGGTGATGGGCGGTGGTTAGGCGGTCGGTTCGGTTCGGTTGGGCGGTTGGGGTTGGAATGCGGGAGAAATCCC
TACCGGCTTCGGCTCCGACGCGGTGACACCTGCGGATGCCACCATTCCTCCCTGGAGGGTGCCGGTGGTATCCACCCCCC
ACCTCCCTTCGCGTGCCCGGGGAAATCTGAGGACTCGTCCGGGCAGCAGCGTCGTCGGCGTCGCATCCCTTCTTGGAGGT
GCTGCTTGGTACGCGGCGGATCAAAGCCTCGGTCTGTAGTGTTTTGTTTCCGGTGGGCGCCGCGGTGGCGGGTTATCCGC
GCTTTACCAAGCTGCCGTAGTTGGCATTTGTTTCTTCTTTTTTTTCTTTTGATGTGTTGTGCTGCTCGCCACAGTGTTAT
CTGTACTCGGTATTGGTTGCTTTGGAATACAAAGCGGGGAACCCTTTTTCGATAAAAACTGCCAGCTGAATCTATGTAAC
TGACTGCCTGTAAGCTACTTG---------TGCAGTGCACACACTGGAGTTGTGCATGTCTTAGATCTCGCATTAACAGG
CACTGAAAAACGTCAGTCGTAATGACCATTGAACCAACCACTGTTAAATGGGATCCACGTAACAGTTGAAACCTCCCAGA
CGAGAGCGCCTATAAAACCCCCCCAGTTCACGTCCCTTTTCCCCAAGATCACCAACAGCGACACCGATCTCTTTCTCTTC
AGCTGCCGCAACGCACCGGCAACCATGGCGAAACCCACAAGCCAGTCGGCGGCAGCGCTCGCCGTCCTGATGCTCGCCGT
GGCCACTCTCACCCTCGCCGTCGCCCAGGCGCCACCGCCGCCCCAACGGAGCGGCCAGGAGATCCACCTGTTCCAGGTGA
CGGTTCGCCAGGTGGACGGCGCCGCGGAAGACGACTACAACTAC------------------------------------
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>chr2A_1167
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------------------------------------ACAACTACAA---------CCTGCTCGGTACCGTGCTCGGCAGG
TCGGTCGCCTCGCCC-TGTTCCTCCTGAACCCCTACCTCTCCAGGCTACATTTCCATGCCATTTTCTGACGCTTCTCTAT
CGTGTTTTCTCTCTGAAACCTCAAGCTACGAGGCCGCATGGGAAGTCATGTTCGAGACCGAGCCCCTGAGGTTCAGCGCC
TACCTCACCAACAACCAGGCCCGCAGACTATCAAGTGAGTGAACATTCCTGGCTTGC----TCCATCCTAGCTAGGAATA
CAGAGATATTTGATGTGTGAG-TACATACGTTCTGGCTGAGCAGGAGTCAAGGGGGTGCTCGGAGTTCGTCAGAGGGACG
ATCCTGTGCCCAGGGCCAA------GCACTGATACCGCAAGTGATTAACGGAGGTGTGAGCAGCATCAAAGGAAGGGAGC
AACGCA-TAGCTTTCCTTTTACTCTTTCACAATCAAAAAAAAAGTGCCGCGGCCTTAATATTTGTGT---------TATA
CTGAAATCCAGCAAGCTTTGCTGTTATAAACCTCTCGCACAAAACTGACGATCCTCGATGTAAAAAACAAAATGATCTCC
GGGGTTCATCAATACCCCAGTACGTAACATGTTCGGTTTTAACCCCGCAAAAG-AAAATGTTCGGTTTCAAAAAAGAGAG
TTGTAAGTGTGACTGTCAATACTATCTGGAACTGTTAAACGGCGGAGGACAAAAACCTGTTCGACAG-AGCCAAAACC--
------CCCTGGGATCATCTCCCG-AAAAATTCTGATTCATGGTCGTCGCTCTTCTTTGGTCCAGCAGCCTCTCTAGACA
AAGTCGGGGTCGACGGTGTGCTGCTTGCACCCTTGGGGGCCGTAGTGCTCCGTGCTCTTGCGCACCACCGTGTGGCACAG
AGCGCAGTAGTGAACCCGGCATGTCTTGCAGAAGATGTGGTTGTTGTTCCCAACTTGCTTAGATCAGAGACTGTTTTCAT
CCACCAGAAGCATCAAGAG-AAAAAAGGAGTAGAAAACACTAG-GCTATCTTCAGAACACACTACTGAAAAATATCACTA
TTCCATACATGATACTCCCTCCGTCCCACAATGTAAGACGTTTTTGCAAGCCAGGTTACAAAAACGTCATATATTGTGGG
ACGGAGGGAGTATATGGAAGCCACCAAACGTTTACCTTGAAATTCGGCTGGCGGCAACCCGGGCACAGATGCGCTCTGGA
CAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACGACATCATTCACCTCCACCTTCACTCTCAGCTTCTCCCTATCGA
TTTTGCATTGTTCACTGTCAAAAGGGAGCATTGG-TTCAGAATTAGTTATCCAGAGAATAGATATGCTACATGATGCTTG
ACAGATCACACTTAACAAGGGGACATCACAAGACAATATGTACCTTGTATGACCTTGACTTGATGGCTTGCCACAGGCAT
AACAGAACGACTTCTCACAGTTTCTGCAAAGCATCTGGTCGCAGCCTGACAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----S-----------S---S--SS---S------------------------S-SSS--------S-----
S-------------S------------S-----------------------------S----------------------
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------------------------------------------------------S-------------------------
--------------------S-----------------S-------------------------S---------SSSSSS
-S--SSS-------------------------------------------------------------------------
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--------------------------------------------S-SSSS------------------------------
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----------------------------------------------S---------------------------------
----------------S---------------------------------------------------------------
---------------------------------------S----------------------------------------
----S---------------------------------------------------------------------------
------------------S------------------------------------------SSS----------------
--------S---------------S-------------------------------------------------------
-S------------------------------------------------------------------------------
-S--------------------------------------------------S---------------------------
--------------------------S---------------------------------------------------S-
------------------------S-------------------------------------------------------
---------------------------------------S---------------S------------------------
----------------------------------------------------------------SSSSSSSSSSSS----
-----------------------S------------------------------------------------------S-
--S-----------------------------------------------------------------------------
----------------------------S--------------------------------S----SS------------
------------S---------S-------S------------------------------------------------S
-----------S--------------------------------------------------------------------
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-------------------S------------------------------------------------------------
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------------------------------------S--------------S-----------S----------------
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---------------------------------S----------------------------------------------
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>forward_20
GGAGTTGGCGGTATTGCTCT------------------------------------------------------------
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>reverse_3520
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-------------------------------------------------------------------------------G
AAGTCGGGGTCAACAGTGT-------------------------------------------------------------
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