>input_sequence_76801
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-------ATGTCGCAATTGGGCTTCAAAGATGAGCATGCC--------GTCAAGAAGGTGGAGATGGCTCTGGACATCAT
GCAACAGGAACCTGGTCTTCACCATGGACACGGTGTTCTGAGC-CACAAACCAAGCGCAAGGCCGAGAATATTTTGTCAG
AAACGTCGAGAGTGTGTTGTGCCATCTG----------TCACATCACCCCCAGGGACAAGTTTGTGCTCAAGTTTAGGCT
C-ATCAAATCGAATGCGCAGTGCCATGTCGATCG------CACCTTCTGTGAAG--------CATCAAGAGCGAAGCACG
TTGTCTTTGATCTCAGTATGGGGTTGC-----GGGGCGGGGCCGTGCCAACTCGTGCTCCATTTCAGCAGTAGCTCTCCT
GCCATCAGATCTCTGCTTTTCATGTCTGTGTGCCTGGACCTGTCCCTTCGCATGATTTCTGTGGCTTCGCAAGCCTATGG
AAGCTCAAG-----------------------------------------------------------------------
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----------------------------------------------------CTCGATGCCGCATGAAGAGATATGCA--
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---------------------------------GTGCCT-TTGCTCGACTACACCTTTGCAGATCTTCTTGGTGGTACGG
AAGCCCTCCATATCCAACCTGCTGTTGA----------------------------------------------------
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>chr7A_1_TraesCS7A01G026500
TGACCAAAACCAAATAATCGCTCGTCTTGTCATGACAATTGATAGTACTATTGATACGATATCCCTTTATTTGATA-TTA
TGTTTGCTTGTGATCCATCTCCCATGTGTGAGTAGTAGATCTCCATTATGGGAGATGTAGGGATTTGCGAGACGTGGTTT
TGCCTGGCTCTGATTTGA-TTATGCGTGATTATTTGGAGCTTTGGTTGAGAGGTTGTTTATGCATGGTGTATATCCATTG
CTTGTTTTATAATTTAAAGGCCCCGACAACACTACACCATGGTCCAAATTTAGAGGGCACGATATCTGCCGGGAAAACTG
GCCAGTGCAAGTCGATCTA-------------------------------------------------------------
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------------------------------------------AACACAATTTTACTACAGTACTATATACATATACAGTA
TTTTGGGGTAGTTAAGATTGGGATCCTCTTTTGTAGCGGTACTGCTGTTACGGCCGGTCACTGTCGTGTGGAGGCTGACC
CCACGTGTCATCGCTAA--GTGTGGGATGTTTTGAGCTTTGGACATCCCTGTCCGTCGGATATTGATCGGAGGGAAGATG
AGAAGGGTCAGGTAACGGTGAGGTGAGTTACCACTTACCACCGAGTATCTCCCAGTCCAGGCCGCCGGCGGATTCATCCT
CGTCGACGACGGGGAGAACGGTGATCTGGACTG-------TCCCGTAGGACCGGAGGTAAGCCGAACCCCCCGCCTCTCT
-CTCTTCTCCAACTCCGGCTCCGTAGTCCGGCCGGCGCAGCACTCTGCCGGAGCCCTAGGAGATTGTTTTCCGGCATTAT
AGATCCAGAGCAATCAAATCCGCCCTACAGTTCCTTTCCGAGATAATCTGATCCAATGCGCACTGTTCTGAGAGCCGGAT
TTGGTTTTGTTTTAGTGTCCTGGTAGATTGGCAGCTGGATTTCCAAAAATCAGTACCTTTGCGGGGGACGAGGGAAGAGG
GGGAGGCTTGTTCCCGTAACCGGAATCTCTCATTTATTACTTGTTACTGGCATGCAGGACATCCTCGGGT----------
--ACGTGATGTCGCAATTGGGCTTCAAAGATGAGCATGCC--------GTCAAGAAGGTGGAGATGGCTCTGGACATCAT
GCAACAGGAACCTGGTCTTCACCATGGACACGGTGTTCTGAGC-CACAAACCAAGCGCAAGGCCGAGAATATTTTGTCAG
AAACGTCGAGAGTGTGTTGTGCCATCTG----------TCACATCACCCCCAGGGACAAGTTTGTGCTCAAGTTTAGGCT
C-ATCAAATCGAATGCGCAGTGCCATGTCGATCG------CACCTTCTGTGAAG--------CATCAAGAGCGAAGCACG
TTGTCTTTGATCTCAGTATGGGGTTGC-----GGGGCGGGGCCGTGCCAACTCGTGCTCCATTTCAGCAGTAGCTCTCCT
GCCATCAGATCTCTGCTTTTCATGTCTGTGTGCCTGGACCTGTCCCTTCGCATGATTTCTGTGGCTTCGCAAGCCTATGG
AAGCTCAAG-----------------------------------------------------------------------
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----------------------------------------------------CTCGATGCCGCATGAAGAGATATGCA--
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---------------------------------GTGCCT-TTGCTCGACTACACCTTTGCAGATCTTCTTGGTGGTACGG
AAGCCCTCCATATCCAACCTGCTGTTGATACCATGGTGATCCTCTTGTTGCTGA-AATGGAAGTTGATAGTCCTGTTGTT
--------------------CTGCAGTTGTTCGGTCTCTAAATGCACGCCTTCCCCCTAGTTTCATTG------TTGCCA
TCCATCCCACAGTATTTTTCTAATGTCATTGTCGTGTA----TGTATC-----AGGTGCATGGATTTGCAAGATGTACCA
GTACCTTCATCAGTTTGAAATCTGAAGCATTTTACATGGGCCCATGCATGTCCTTGTAGTTTGGTTTTCCTTTGGGAGTT
AGTTAGCCCCTGCTTATGTAGGTTCTCTTTGGCATTAGCTTATGTATCTAAGCAAAAAATATCATGCATTATCTAAGTGT
GAGCACAGGATTTAAGAAAGCTTATCTTGGATCTTTTAAATGTACAGAAGTC--ACGAAGATAAGAGGTGTTGTTTTACA
TGACGAGATGAGAGATGTTGACGGGCTGGATTTTCAGAGTGTTGTTAAGCCAAATACCAATTGACCAGTTTAAACAGACA
TATCGTCTTTTTCAGAAATAAAGAGGTGAACTTTAATCTCAATCACTGGTTTGCACCGAAATTTATAAAAA-AAATTAAC
GGGAGTGTACCCAAACATACTTAAAAAAATTGTAGCAAAATGCTGGATATTTGACCTAT----TCGCTCCGGACAGTAAC
AAATCATCCTTACTTGTGAACTACGATGATACAAGCCAGTATAGAAAATTGTGTTACCATCATAAAT-TTTTTTTCTTAT
TATTTTTGTATAATCGGTTTCGACTTTTCTCGATCAGGTCTAGGGCCTGATCTCAAATTTGACATAGAGCCCAGTATTCT
GTAGGTACGTACAACCCTGATCCCACTGCTAGACTTAATTTTTTTGTTAGCTGGATCACATGTAGGGTCATCCGTAGCCT
-ACTTTACCTTTAGCTTTACCTTTGTGGTCTTTAAACTTACCAAGCAAAGAATCTCTGATGATGACAGATGGATGGAGCT
AGAGACTGGAGTGTGCTGGGAGCAAAGAATTTT
>chr4A_1
TGACCAGAACCAAATAATTGCTCGCCTTGTCATGACAATTGATAGTACTATTGATATGATATCGCTTTATTTTATATTTA
TGTTTGCTTGTGATCTATCTCCCATATGTGAGTAGTCCATCCCAAGTACGGGAGATGTAGGGATTTGTGAGATGTGGTTT
TGCCTACCTTTGATTTGATTTATGCTTGATTATTTGGAGCTTTGGTTGAGAGGTTGTCTACGCATTGTGTATATCCATTG
CTTGTTTTATGATTTAAAGGCCG-GATAATACTACACCATGGTCCGAATTTAGAGGCACTACTAGAATGGCCAATTTTGT
CGAGTTTGGCGAGTCGCCTTGGAGGTCTGTAAAGCTGCATATCAGTGATGGTGCCACGCCGAGCTCGGCTATGGAGGTGA
TCCACCATTTGTTCCTTTGGTGGCTGTTGTGACAGTGCCAAAGGCTGGTAACGAGCGTTGGTGTGAAGCTCAACGGATTA
TTAGGTCTTTTTTGTAATTTTATTTCTTGGCTGATGTTCCTTTGTGTAAAGGCTAGCGTTTTGAGATCTTTTCAGTTTTT
TCAGGTCGATATGTATGTGTCTTGTACTATTATCCCTATGATATATAAGTGAGATAAGTATTACCATGAAAAATGGCTTA
TTTATTATTTCTATATTATATTAAGAAAATAATAAAGGGGGGCTTCACGAGAAATACTAGGCATGGGGCAATGACAAAAA
ATGGCATGAAACTTTCACTTCAAAATTGTAAAATTTCATAAATTCTCGGACAGTTAAGAAAGTCTAAAACATTGTCAGTG
ACTTTGATACTAGAAACATTATTTCAAAATTAGTGCTCTTTTAACACAGTCTTACTATACTTTGGGGTGG----------
------------TATGATTGGGATCCTCTGTTGCAGCAGTAGTGCTGTTA----CGGTCACTGTCGTGTGGAGCCTGACC
CCATGTTTCATTTGCTAATGTGTTGGTTGTTTTGGGCTTTGGATATCCCTGTCCGTCGGATCTCCATCAGTCGGACATCC
ATGTTACAGGTGAG--------------------TTACCACGTAGTATCTCTCGGTCCAGGCCGCCGGTGGATTCATCCT
CGTCGCCGATGAGGAGAATGGTGGTCTGGATTGAGTCCACTCCCGTCGAATCGGAGGTAAGCCGAACCCCTCGCGTCCCT
TCTCTTCTGCCACTCCCGTCTGCACATTGGTGCACACTTTTACTGTTCATTCATGTTTTCAGATTTCAGAAAGGGGGGGG
TTAACTCTCTCACCTGCACATTTTGCTGCCTAGTAATTAAGTTGGTTTGACGACTGAA----------------------
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---------------------------TCCTAATAATTATTTATTACTCGCGTGTAGGACGTTCTTCGTGGGATCCATGA
TGATGTACTGTTGCAGTTGAGCTTCGAGGATGAGTTTACAGTCAAACTGTGAAGCAGGTGGAGACGGCACTGGAGGTCCT
CCAACAGCGCAAACCTGAC------------------------------------------------AAGATTTCGTCAG
AAACTTCAACCGTGTGCTGTGCCATCTCAA--------TCCCACCGCCCCCATGGATAAGTTTGTGC-------------
------------------AGTGCCATGTCACGGCGACAATCTTGTGTCAGGCTGCGGTAC--------------------
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-------------------------CTGTGTGCAGTGTGCAGTCCTGGTAGGAAGGA---GATGCTGCATAAGCTTGAGG
CGCTAGCTCCAAACCTTGCTAAGTTCGAGTTTGCCAACAATGATGATGACCATCTGCGGTTGGTTGATGGATGCGTGCAC
ATACAAGTGGCGGCTGTAATGCTGCTAACATCGGGTGGTCTTTTATCGAAAAAGGCTTTCGCCCCGCTTTATATATAAAG
CAAAGATCCACATCATCCGATACAAATGCACGCCAACACGACACACACCCAAGGAAGGATACAAAAGCGTTGAGCGCAGC
AACACCACCCCTAGCACACTACCACGAAGAGATGAAGCCGCATAGAACGAACCGTAGACTCCAAGGTGGTGCCTTCAGGA
AGGATACGACACCGGAGCACCGCCACCGCCCGATCCGAGGATCAGAGTTTCCCTCGGAGCCGCACGACGGGCGGTGAGAG
CCGCGACGACGCTTTCAAGAAGGGAACGAGTTTCGCCGTCACCGGTCCGTCCGAAGAAAGAGCAGGTTTTCACCCCGGCC
AACACGCACCGCCGCCGAACGCTACACCCCGGCAACCACGCCGCTCACACGACCATGGTCACCGGGCAGCGCCAAGACAC
GGGCTTCGCCCAAGAGCACCGTGCACCACGATCGGGTCTTCTTTTCAGCTATGCATGTGCCGAAACTTGCA---------
-----------ATGCAACTTACTATTGACACCAAGGTGACTGTTTGTTCAATGCTAACTGAAGTTCATACTTCTGCTGTT
GTGCTCTTCTGCATCTTTAACTATAGTCGTTCACTCTCTAAATACATGCATGGCTTCCCCTTAATGTCAATTGTTTGTCA
TCCCAA--AATATATATTCCTCATGTCATTGTTGCGCGTATGTATCAGAGCAGAGGTGCATGGATTTGCAAGATGCGCCA
GCAGCTTCATCAATCTGGAGACG------TCGTATATTGACGAGAAATATATCAATCA-TTTGGTTTCTGTTTCAGAGTT
CACCCCTGCTTTAGAGCAACTTGAACTCTGG-------------------------------------------------
--------------------------------------------------------GAAGATAAGAGGTGTGTTTTTGCA
TGACTAGATAAGAGATGCTGCTGGGCTGGGTTTTGAGAGACTATACCC--------------------------------
-----------TCACAACTAAAGGGGTAAA-TTAAACCTCAACCACTGATTTGCATCGAATTTTGTAAAAAGAAAATAAG
GATAGTGGACCCAAGCATACTTAACGAAATGGTGCAGAAGTGTTAGATACTTGACCCAGTACGTCGCCTCTGATAATAAC
AAATCTTGCTAACTTGGG-------ATGATACAAGCCGGCATACAAAATTGTTTTATCACCGTAATGATTTTTTTCTTCT
TATTTTTGTACAATCGGTTTTGATTTTTCGTAATCAGC-------CCTGATCTCAAATTTAGCATAGAGACCAGTATTTT
CTAGGTACGTATGGCCCTGATCCGACCTCTAGA----------------------TCACACGCAGGGCCAACCATAGCCT
AACTTTATCTTTAGCTTTACCTTTGTGGTCTTTAAACTTACCAAGCAAAGAA--TCTGATGATGACTGATAGGATGGAG-
---------------------------------
>chr7A_947
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---------------------GGAGTCTCTCATTTATTACTTGTTACCGGCGTGCAGGAGATCGTCGGCT----------
--ACGTGCAGTCGCAATTGGACTTCGAGGATGGGCATACC--------GTCGAGAAGGTGGAGACGGCTCTGGACATCAT
CCGACAGGAACCTGGTCTTCACCAGGGACACGTTGTTCTGC-C-CACAAACCAAGCGCAAGGCCGAGAAGATTTTGTCAG
AAACATCGACAGTGTGCTGTGCCATCTTAGTCACAACTTCACAACATTCCCGGGGACAAGTTCGTGCTCAAGTTTAGACT
CAATCAAATCAAACGTGCAGTGCCATGTCGACAGATTGGTCGCCTTCTGTGCAGCAATGTGGCATCAGGAGCGAACCACG
CTGTCCTCGATCTCAATACGGGTCGGATCGTGGGGCCGGGGACGTGCCAGTTGGTGCACCATTTCAGCAGTAGCTCTCCT
GCTGTCAGGTCTCTGCTTTTCATGTCTGTGTGCCTGGACCTGTGCCTTCGCCTGATTTCTGCTGCTTCGTAAGCCTTAGG
AAGCTCAAA-----------------------------------------------------------------------
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----------------------------------------------------CTCGACGCCGCGTGAAGAAATATCCA--
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---------------------------------GTGCCTACTGCTCGACTACACTTTTGCCGATCTTCCTGGTGGTACGG
AAGACCTCCATATCCAACTTGCTGTTGACACCAAGGTGATTCTCTTGTTGCTGA-AACTGAAGTTGATACCCCTCTTGTT
GTTCTCTGCTTCATTTTTAACTGCAGTTGTTCAGTCTCTGAATGCATGCCTTCCCATTAGTTTCATTG------TCGTAG
TT----CCAAAATATTTTTCTCATTTCACTGTTGTGTGCATATGTATC-----AGTTGCATGGATTTGCGAGATGCACTG
GCAGCTTCGTCATTCTGAACTATGATGCATCTTATATTGACTCATGCATGCCTGTA------------------------
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>chr4B_1080
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--------------GTCTTCACCAGGGGAACGATGTTCTGC-CTCACAAACCAAGCGCAAGGACAAGAATATTTTGTCAG
AAATGTCAACAGTGTACTGTGCCATCTGAGTCACA--------CCACCCTCAAGGACAGGTTCGTGATTGAGTTCAGACT
C-ATCAAATTGAATGCGCAGTGCCGTGCCGACCAATGCGCCACCTTTTGTGCAGCA--------TCGAGAATGAAGCACG
TTGTGTTCGATCTCAGTATGGCTTCATGAGGC------GGGGCGTGACAATTGGTGCACCATTTCAGCACCAGCTCTCCT
GCCGTCAGGTCTCTGCTTT-CATGTCTGTGTGCCTGGACCTATGCCATCGCCTGATTTCTATAGCTTCGCAAGCCTAAGG
AAGCTCAAG-----------------------------------------------------------------------
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----------------------------------------------------CTCGACGCCACATGAAGAGATATCCA--
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---------------------------------GTGCCT-CTACTCAATTACACCTTTGCCGATCTTTCTGGTGGTACGG
AAGCCCTCCATATCCAACATGTTGTTGATACAAGGGTGATTCTCTTGTTGCTGA-AATGGAAGTTGATACTCCTGTCGTT
GTTCTCTGCTTCACTTTTAGCTGCAGTTGTTCGGTCTCTAAAAGCATGCCTTCCTCCTAGTTTCATTG------TTGCCA
TCCCAC--AGTATATTTTTCTAATGTCATTTTCGTGTA----TGTATC-----ATGT-----------------------
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>chr7D_1768
TGTCCTTT------------------------------------------------------------------------
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----------------------------------------------------------GTTTGGTTTCCCTTTGAGAGTT
AGTTAGCCCCTG-TTATGTACGTTCTCTTTGGCATTAGCTTATGTATCTAAGCAAAAACTATCACGCCTTATCCAAGTGT
GAGCGCAGGATATAAGAAAGCTTATCTTGGATCTTTGAAATGTACATAACTCAGACGAAGATAAGAGGTGTTGTTTTACA
TGACGAGACGAGAGATGTTGACGGGCTGGATTTTCAGAGT---GTTAAGCCAAATACCAATTGACCAGTTTAAACAGACA
TATTTTTTTTTTCAGAACTAAACGGGTAAACTTTAATCTCAACTACTGGTTTGCACCGAAATTTATAAATTT---TTAGG
GGGAGTGCACCCAAGAATACTTC-AAAAATGGTAGCAAAATGCTGGATATTTGATCCAT----TCGCTTACGACAGTAAC
AAATCATCCTTACTTGTG-------ATGATACAAGCCAGTATAGAAAATTGTGTTACCATCATAATTC-TTTTTTCGTAT
TATTTTTGTATAGTTGGTTTTGACTTTTCTCGATCAGGTATAGGGCCTAATCTCAAATTTGACATAGAGCCAAGTATTCT
GTAGGCACGTACAATCCTGAT-CCACTGCTAGACTAAAAAAAAT-----GCTCGATCACATGTAGGGCCACCTGTAGCCT
AACTTTATCTTTATCTTTACCTT--TGGTCTTTAAACTTAGCAAGCCAAGAA--TCTGATGATGACAGATGGATGGAGCT
AAAGACTAGAGTGTGCTGGGAGCAAAGAATTTT
>SNPs
------S-----------S-----S-------------------------------S------S--------S-------
---------------S---------S----------SS---S-S-S--S------------------S----S-------
-----SS--S---------------S-------------------------------S--S----S--------------
----------S-----------SS--S--S---------------S----------SSSSSS--SSSSSSSSS-SSSSSS
SSSSS-SSSS-SSSSS-SS-------------------------------------------------------------
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------------------------------------------------S-S------S-S-SSSSSS-SSSSSSSSSSSS
SSSSSSSSSSSS--S--------------S---S---S---S--------SSSS-------------------S------
---S--S----SSSSS-------S--S-------S--------S-----------------S-SS---S-SS---SSSSS
-SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSS-------SS--------S-S--------------S-----------
-----S---S-S------S----S------S---------------S-S-S-------------------S---S--S--
--------S-S-----S-SSSSSSSS-SS-SS-SSSSSSSS---S-S-SSSSSSSS-SSS-----SSSSSSS--SSSSSS
SS-S-SSSSS--SSSSS-SSSSSSSSSSSS-SSSSS-SSSSSSSSS-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---S--------------------------S----------------S-----------
-------S-----------------S-S---------S--------------------------S---------------
S-----------------------S-------S-------SS--------------------------------------
---------S------S--------------------------S---------------------------------S--
-------------------------------S-------------------S----------------------------
-------S--------------S-S-S--------S-----S--------S-S----S----------------------
---S----S------------------------------------------S----------S--------------S--
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---------------------------------------------------------S----------------------
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----------------------------------------S-------------------S-------S-----------
------------------S--------------S------S----------------------------S----------
----------------------------------------------S---------------------------------
---SS----S-S---------------------------------------------------------------S----
-S-S--------S-S----S-----S----S---S--S-S-S--------S--S-SS----------S------S-----
------------S-------S-------------------------------------S-----S--S-----S------
----S------S------------------------S---------S--S------------------------------
----------------------------------------S-S-------------------------------------
---SS-S----------S-----S---S--------------S------------------------------------S
-------S------S---------------S-------------------------S-----------S-S---------
------------------SSSSSSS----------------------------------------S--------------
--------------------S------------------S----------------------------------------
-----------------------------------S--SSSSS-SSSSS---S--------------S--S---------
-------S--------------------------------------------SS--------------------------
-S-----S-------------------------
>forward_1427
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-----------------------------------------------AATCAGTACCTTTGCGGGGG-------------
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>reverse_2920
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---------------------------------------GCCCATGCATGTCCTTGTAG---------------------
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