>input_sequence_76795
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-------------------------------------------ATGAAGGCATCTACGGCTCGTCTTCTCGCGGCCGCAG
CGCTCACTGTCATCCTCGCGCTGGCGAGCGGGGTCGCCAACGCAACGGTGGTGACGACGTGCAAGGCGGCGGCCGGCAGC
GACGGGCGCGTGGACTACGACTTCTGCGTGTCGGAGCTGGGCAAGCACCACGACAGCCCCAGCGCGGACACCTGGGGCCT
GGCCAAGGTGGCAGCCCTCACCGGCGTCGTCGACGCCGACAACGCGGTCTACGACATCAAGGACCTGCTGGCCAAGCACG
GCACCGACGCCAGGGCGCAGGCGGCGCTGGGGCAGTGCCAGGAGCTGTACGACAGCATGGGGTACGCCTTCGCCGAAGCG
CAGGACGACATCAACAACCGCGACTATGCCGCCGGGAAGGAGAAGGCCGGGGAAGCCGCATCTCTCGCGCACCGGTGCGA
TGACGCCTTCGCCCAGGCCGGTGTCCCGTCGCCAGTCACGCAGCACACCTCCTACTCGGTGCAGATAGCGGTTGTCTGTA
CGGCTATTACCAACCTCATCCAGTGA------------------------------------------------------
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>chr6B_1_TraesCS6B01G309700
TTCACCGAACTCGAAAAAAGTTCATCAAATTTGAAAAAAAAATCGTCAAATTTGAAAAACGTTCATCAAATTTTTGAAAA
ATTCATCAAAATTCAAGAAAAAGTTCATCGATTTGCAGAAATATTCATGAAGGATAAAAGTTTCACGAATTTGAAAAAAG
AAAGAAAAATGGAAAAGAAGAAGAAATAAAAGACGGGAAAACAAGTAAGTGATCACACGAAGGGATGTGGTGGGTTGGTC
GTGGTGTCTTACTCTAAACTCTCACTGGTCACGGGTTTGAGACCCAGCTCTGGCGCACCTTTTTTGCAGTTTAGAAAACA
GAAAAAAAAAAGAGTCAAAACAGGGCCGGCCCAACGTGGTGAGGGGGGTATGCGCCCGTTAGTGGAAAGACTTGTAGCGG
GCGCTAAAGGCGCCAAATATGATTTAATTATTATTTTTCAGGCAGAAATAGGATTTAGCTAGCATTTAGCATTTCTCCCT
TGCGTCCCCATGCTCTCAAAGCTTTTTGTTTTAGGCAAACTCGTAAAGCTTTTTATTAAAACGTTACGTTTACAGGGACG
AAGGAAAGATCCCCCGGGTGGACTAACCAAACATGGCGACCGGTCCCGAGAGTTAAAGCTTGCTTTGCTAGTTTGTGGGC
CTTGACGTTCGCGGTTCTAAACTCATGACTAAAAACACAAGAAGTAAAATTGCTAAAGTGCTCCTTAATCTCCTGCACTA
CAGCTCTCTCAAAGCTGGAGCAAATGGTTTTAGCGTTTTGCAGCCCAATCTTAGCAGGACCCTTTTTCTACCGCAGCTGG
TCCAAATAGGCCTGGGTCTAACAGCTGAGGGCCATTAACCAATCCGCAGTACTATTCAGCACTCCAGCTAGCCGCGCCTA
TAAATGCAACAAGATTCAGTCCGTCAGTCCA---CCTAGCTCATATATATTCTGTCCGAGCAGGCAAGAAGCGTCTACGA
ACTTAATTAGTCGCTTCCTTCGGAAACAAAAGTAACAAGGAGCATGAAGGCATCTACGGCTCGTCTTCTCGCGGCCGCAG
CGCTCACTGTCATCCTCGCGCTGGCGAGCGGGGTCGCCAACGCAACGGTGGTGACGACGTGCAAGGCGGCGGCCGGCAGC
GACGGGCGCGTGGACTACGACTTCTGCGTGTCGGAGCTGGGCAAGCACCACGACAGCCCCAGCGCGGACACCTGGGGCCT
GGCCAAGGTGGCAGCCCTCACCGGCGTCGTCGACGCCGACAACGCGGTCTACGACATCAAGGACCTGCTGGCCAAGCACG
GCACCGACGCCAGGGCGCAGGCGGCGCTGGGGCAGTGCCAGGAGCTGTACGACAGCATGGGGTACGCCTTCGCCGAAGCG
CAGGACGACATCAACAACCGCGACTATGCCGCCGGGAAGGAGAAGGCCGGGGAAGCCGCATCTCTCGCGCACCGGTGCGA
TGACGCCTTCGCCCAGGCCGGTGTCCCGTCGCCAGTCACGCAGCACACCTCCTACTCGGTGCAGATAGCGGTTGTCTGTA
CGGCTATTACCAACCTCATCCAGTGAACAATGTCCAAAACTTGGAGATACTATACGTGTGTAAAAGTAGTACGTGCTACT
AAAAGAGTGTGGTTTACCTTTAAGAAAAGAGTGTGGTTTACTTTAATATCGACGTCTTA-TTAGGGTACACGCATGTTTT
GAGTCTCACATTTTTT----TTTCTGTTCACATCCTGAGCAATATCTGTGTAACATACTTCCTCGTTTGAGAATATAAAG
CGTGTTAATCATCCAATCTTGTCTCAATAGTTGATGTGAGCTTAGCAGGAGTATCGAATCATTTTCATCCCCTTCCTTGT
CCCGGTGACCTAGGCGACCAACATGGCT-GCTGATCTAATCTCTTTACCGACGAGGTTGCGGCCCCTTTTCT-CTCCACC
TTACGCCCCGACGACGGGAAGGGGCGGGGACCTAGAACTTTCGAT------------TTGATGCTGGTAGGATTAGGAAT
AAAGTTAGGATTTGTCTTCGATTGGCGGTGACAAGATT-------------GCCAAGGTGGAATAAGGTCTTCCCACCCG
GTCTAGTTCCAGTGGTGTTGCTTCCTATCATTGAGAGGTGGTGTCTGGATTGTGTGTCCCCATATCTGATTCTTCGGGTT
TGGATTTTTCGTTATAAGGTTTGTCTTGCTGGCGTTGTCCCGTGGAACGAACAATGTGCTCGTGTGTCTTGGTCCTTCGG
CTCTAGTTTCGATTGATAAAGGTTGTTCAGCCTTGGTCTTGTTGCGGGAGCGTGTGAGATGTGTGTTTCCCGGCTCCATC
TGGCCGGACTTGGGGTGCTCTACAGGCCAACTGCGGTATTTTCTTCAATGGGGCAACGTTTTGCTATTCAGATGTGACTG
TCGGCGTCTTCTGTTCTACATCATCGATTTTTCGTCCACTACATCTACAAGATGCAACAACGAGGTTTGCTCACAGTGCA
TTGCTGGTGGATGCAGGAGCAAGATGCCTTCGACACCCCAAAGAGTTGATGTATTTTGTAATGTCTGCAAGTGCGTTTTC
AAGAGTATGTGCTACTTA
>chr6D_729
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--------TCAAAGCTGGGGCAAATGGTTTTAGCTTTTTGCAGCCCAACCTTAGCAGGACCCTTTTTCTACCGCAGCAAG
TCCAAATAGGCCTGGGTC----------------------------------------------CAGCTAGCCGCGCCTA
TAAATGCAACAAGATTCAGTCCGTCAGTCCTATTCCTAGCTCATATCAATTCCGTCCGAGCAGACAAGAAGACTCTACGA
ACTTAATTAGTCGCTTCATTCGGAAACAAAAGCAACAAACAGCATGAAGCCATCTACGGCTCGTCTTCTCGCGGCCGCAG
CGCTCGCCGCCGTCCTCGCGCTGGCGAGCGGGGTCGCCGACGCAACGGTGGTGACGACGTGCAAGGCGGCGGCCGGCAGC
GACGGGCGCGTGGACTACGACTTCTGCGTGGCGGAGCTGGGCAAGCACCACGACAGCCCCAGCGCGGACACCTGGGGCCT
GGCCAAGGTGGCAGCCCTCACGGGCGTCGTCGACGCCGACAACGCGGTCTACGACATCAAGGAGCTGCTGGCCAAGGACG
GCGCGGACGCCAGGACGCAGGCGGCGCTGGCGCGGTGCCAGGAGCTGTACGACAGCATGGGGTTCGCCTTCGCCGAAGCG
CAGGACGACATCAACAACCGCGACTACGCCGCCGGGAAGGAGAAGGCCGGGGAAGCCGCGTCTCTGGCGCACCAGTGCGA
CGACGCCTTTGCCCAGGCCGGTGTCCCGTCGCCGGTCACGCGGCACAGCTCCTACTCGGTGCAGATAGCGGTTGTCTGTA
CGGCTATTACCAACCTCATCCAGTGAAGAACGTCTAAAACTTGGGGATAC--TACGTGTGTAAAAGTAGTACGTGCTACT
AAAAGAGTGTGGTTTACCTTTAAGAAAAGAGTGTGGTTCACTTTAATATCGACGTCTTA-TTAGGGTACTCGCATGTTTT
GAGTCTCATCTTTTTTTCCTTTTTTGTTTGCATCCTGAGCAATATCTATGTAAGGTACTTCCTCGTCTGAGAATATAAAG
CGCGTTAATCTTCTAATCTTTTCTCAATA---------------------------------------------------
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>chr6A_741
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--------------------CAAATGGTTTTAGCGTTTTGCAGCCCAATCTTAGCACGAACCTTTTTCTACCGCAGCTGG
TCCAAATAGGCCTGGGTCTAACAACTGAGGCCCATTAATCAATCAGCAGTACTATTCAGCATTTCTGCTAGCCGCGCCTA
TAAAGGCAACAAGATTCAGTCCGTCAGTCCTACTCCTAGCTCATATCAATTCCGTCCGAGCAAACACGAGGCGTCTACGA
ACTTAATTAGTCGCTTCCTTTCGAAACAAAAGCAACAAGAAGCATGAAGCCATCTACGGCTCGTCTTCTCGCGGCTGCAG
CGCTCACCGCCGTCCTCGCGCTGGCGAGCGGGGTCGCCGACGCAACGGTGGTGACGACGTGCAAGGCGGCGGCCGGCAGC
GACGGGCGCGTGGACTACGACTTCTGCGTGTCGGAGCTGGGCAAGCACCACGACAGCCCCAGCGCGGACACCTGGGGCCT
GGCCAAGGTGGCAGCTCTCACCGGCGTCGTCGACGCCGACAACGCGGTCTCCGACATCAAGGACCTGCTGG-CAAGCACG
GCACGGACGCCAGGGCGCAGGGGGCGCTGGCGCAGTGCCAGGAGCTGTACGACAGCATGGGGTTCGCCTTCGCCGAAGCA
CAGGACGACATCAACAACCGCGACTACGCCGCCGGGAAGGAGAAGGCCGGGGAAGCCGCGTCCTTGGCGCACCAGTGCGA
AGACGCCTTCGCTCAGGCCGGTGTCCCGTCGCCGGTCGCGCAGCACAGCTCCTACGCGGTGCAGATAGCGGTTGTCTGTA
CGGCTATTACCAACCTCATCCAGTGAAGAACGACCAAAACTTGGAGATAA--TACGTGTG--AAAGTAGTACGTGCTACT
ATATGAGTGTGGTTTACCTTTA---AAAGTGTGTGGTTCACTTTAATGTCGACGTCTTCTTTAGGGTACTCGCATGTTTT
GAGTGTCACCTTTTTTTC--TTTCTGTTCGCATCCTGAGCAATATCTATGTAAG-TACTTTCTCGTCTCACAATATAAAG
CGAGTTAATCATCTAATCTTGCCTCAATAGTTGATGAATCG--------------------TTTTCGTCCCCTTCCTTGT
CCTGGTGACCTAGGCGACCAATGATGGTGGCTTATCTACTCGCTTTACCGACGAGGTTGCGGCCCCTTTTTCCCTCCGCC
TTAGGCACTGACATCGGGAAGGGGCGAGGACGCTGAACTTTCGGTTCGGTGGTGGCCTTGGTGGTGGTAGGGTTAGGAAC
AAAGTTATGTTTTGCCTTCGCTCGGCGGTCACAAGAGATGATGGTATCGTCGCCAGGGTAGAATAAGGTCTTCCCACCTC
GGCATCGTGCCAATG-GTTGCTTCCTATCGTTGAGAGGTGGTG--------------------ATCTGATTCCTCGGGTT
TGGATTTTTCGTTATAAGGTTTGTCTCGGTAGCGTTGTCCTACGAAGCGAACAATGTGCTCGTGTGTCTTGGT-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------S-------------------------------------------------------------
-----------------------S------S-------S-----S----------------S-S----------------
------------------------------S---------------SS----S----------S----------------
--------------------------------S------S---------S------------------------------
-------S-S-S--------------------------S-----------------------------------------
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----S-------------------------S--------------------------------S----------------
--------------------------S--------------------------------S-----S-------S------
S--------------------------------S-------------S--------------------------------
---------------------------S--S-------------------SS----------------------------
--------------------------------------S------------------------------S----------
---------S-------------------S-----------------S-----SS-----------S-------------
--S----------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------
--S------------------SSSS-S-----S-----S--S----------------------------SS-----S--
---S--S-S---SS------------S----SSS---------S----------------S--S-------S-------S
-------S-S----S-----S-S------S------SS-----------------S---S------------------SS
-S-SSSS-S-SSSS-S-------------S-------------SSSSSSSSSSSSSSSSSSSS---------S-------
--------------------------S-S-S---------SSS-S-S--------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_650
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----------------------------------------------------------------------GTTTGTGGGC
CTTGACGTTC----------------------------------------------------------------------
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>reverse_2015
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--------------TCTTCGATTGGCGGTGACAA----------------------------------------------
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