>input_sequence_76791
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--------------------------------------------------------------------------ATGGCG
CCCCCGCCGCCG-------------CCGCCGGCAACCCTCGCCGCCGTCCTCCTCCTCCTCGTCTCCGTCTC--------
-CCATCCACCGGCCTCGGCCT------------------CCTCGTCCCCGTTCGACGCGGCGCTGGCGGCGCTGCAGGGC
TGGATCGGCTACGCGTTCCGCTCCCCGGACCTGCTCCGCCGCGCGATGACGCACGCCTCCTACTCGCGCGAGAACGGGCG
CGCGCTGGCCGTGCTCGGCCTGGCCGCGGCGGAGTCGGCCGCCGCGCTGCGCGCACTCGCCGCCGACCGCGACGCGCCGG
CCTCCGCCGTCTCCCGCGCCGCGCGCGACGCCGCGGGGGAGCCCGCCTGCGCCGCGGCGGGGGCCCGCGCGGGGATCCCG
GGCGTCGTGCGCGTCGCCGGCTCCACCAAGGCCTCGGCCCCGCCCGTGGTGTGCGGCGCCCTCCGCGCGCTCCTCGGGGC
CGTCGCCGTCGACAACGGCACCGCCGACGCCGCCGCCGAGGTCTTCTGGCGCCTCCACGTCGTCA------CCACCGCAA
CCGCCGCCGCCGCCGCCATGTGA---------------------------------------------------------
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>chr5D_1_TraesCS5D01G553400
TAAGATATAAACCGAGGGGCAGGGCTCGTAGACGACACACATAACAATCTCGAGGTAGATCATCTGTACTTTGTATTCCA
CCCAAAAGCAATAAAACATAAGCAGAACATAAGGTTTTATCTTTGAGGAGAGTCCCAACATGGGTAAAAACCCGTACAAG
ATGCCTAGCATAGGATCCCTACCTCGAGATTTGCCAGATTTAGCTCCATCAGCTTGGGCTGGACATGGTCGAATCCTACC
TGTACTGCACATGCAGATCAATGATGCTGGAGCTCGCCGGACGGACGAGGGGGTGCGCACCCTTGATGCGCGACAAGGTA
GCACGCGGGCGGGGCAAATTAAACAGGATCTCGGCAAGCTCGCCCCCCATGGCTGCCAGTGCAACGACGCGAGCAGGGAA
GCGTCTAGGGGCGCGGGTTCGGATGCGAAAGAAGGGGGGAGAAGGCCTGGGGCGCGGCCATGGACCACGACGTTGCCGAT
GGCCAGTCATGGCGGCGACGGTTTTGACAGTGGGTGCCGCCTGTCGGGCTTTGCTTTGCTGTCAAAACGCGATCAATGAA
CGACCACTTAGTATTTCCGGTAAATTTTATAGGATTTTGATGTTATTCTGCACATAGCTAGCTAGATTAGACATCCGATT
TGACATTCTGACATTGAGCTCCAAGTTGAACGTTTGTTTCACTCAAA----AAGCAAGATGGGCATGGGACAAGTAGAGT
AGTAGCATATCACCTCACCACATTTCGCCAGCAGATGCATCGGATCTGTGAATCTACACTACACCTGCCCTGCCCAACGT
GACGCTTCGACTTTTTTTTTCCGCCATGCTGCCGTGCCGATAGGCC-ATCGGGCCGACATACGCCACATGCCCGATCCCA
ACCCG-----------GCCCAAGTGCTCCGGCCCGCTCCACCTCGCCTAACTA-----GAGAATCGCCACGTCG--GCAA
CCGGCCGGTCCAACACCTTTCCTCTCCCGCACTTCACCGCCACCC-----------AAACCTAGCAGAGCAGCAATGGCG
CCCCCGCCGCCG-------------CCGCCGGCAACCCTCGCCGCCGTCCTCCTCCTCCTCGTCTCCGTCTC--------
-CCATCCACCGGCCTCGGCCT------------------CCTCGTCCCCGTTCGACGCGGCGCTGGCGGCGCTGCAGGGC
TGGATCGGCTACGCGTTCCGCTCCCCGGACCTGCTCCGCCGCGCGATGACGCACGCCTCCTACTCGCGCGAGAACGGGCG
CGCGCTGGCCGTGCTCGGCCTGGCCGCGGCGGAGTCGGCCGCCGCGCTGCGCGCACTCGCCGCCGACCGCGACGCGCCGG
CCTCCGCCGTCTCCCGCGCCGCGCGCGACGCCGCGGGGGAGCCCGCCTGCGCCGCGGCGGGGGCCCGCGCGGGGATCCCG
GGCGTCGTGCGCGTCGCCGGCTCCACCAAGGCCTCGGCCCCGCCCGTGGTGTGCGGCGCCCTCCGCGCGCTCCTCGGGGC
CGTCGCCGTCGACAACGGCACCGCCGACGCCGCCGCCGAGGTCTTCTGGCGCCTCCACGTCGTCA------CCACCGCAA
CCGCCGCCGCCGCCGCCATGTGACGCGTGTGCGAGTAG---ATCATCCGAGATGGTTCGCACTCGCACATCGGTGTTCGC
--------------------------AAGCTGCTGCTGCAATCTACCTCTAA---GTAAATTATCAACTGCCACTTCGAG
CTTGGATGAAAATTATCAACTTCCACTTTGATTTCGTATGC---------------------------------------
---------------------ATGCAAATTATCAACTGCCGCTTCGAGTTGTGCTATGTTTCTTGTGACATCCATCCAGA
TCCAGGAGTGCGCAATCGAATTCTTGATTAGATATGGATCATGGGACAAGGGTTCCTTCTTG------------------
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-------------------------------------------------------------------------------A
ACCCATGTTTGATGCCGAGAATCAAATGCTTCTGCATTTGGCACTGCCAGTTTATCCCTCTATTCCATTTCAACTAAAAT
CAGGA----------------------------CAAAAAGTATTTATCAAGACGAATGATTCTTGTATTTGT--------
---------------ATCACTTGATTGACATGGGACCAGCATGAG-AACAAGCAACGCAAAAATGGTGTCAGTACATGAT
GTTACATAGATGAGCATCATTTTGACACTAGTACAGGGGCTAAGACTTCAAAGGCAAGTACCAAACGACTACACTCGACA
CTTCTCAGCATTACATCAGCAACATCAACCTCGTATTTTC-TTCC-TCGTTCAACCCAAGGCAGCTATCATCAGGATCTC
ATCTTGTCCAAAACTCTCAACACTCCCATTACAAACCGAAGCGAACGATCCATCACAGGGACAGACGGCCTACTTCCTCG
CCTTCTTGCTCCGGTGCGTGTTCTCGGGCGTCGAGCCGTCCTGCTTGCGTTTCTTGTTCAGCTGCTTCGCCTTCCTGGCT
GCCACGGCGGGCCGCTTGGCTTTGCGGGCGCTCTCGCTTTGTCCCGTCTCGCTAGGCCTGCCTTGCTGCTTGCCTTGGTT
GACGGGGCGCCGGGCCACCTTCACCTTCTTCACGACGCCAGATTTGGTCGACTTCAGGCCTTGGTAAGACAGGCTTGCCG
GCGCCTTGCGTTTGTTGCTGTCGCTGCCTTCGCGGGACTTGCTGCCTGACGTAAAAGGTGTCTTCT
>chr4A_612
ACATGTAGG-----------------------------------------------------------------------
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--------------------------------------------------------------TAGATTAGACAGCCGATT
TGACATTCTGACATTGAGCTCCAGCTTGAGC----GTCTCACTCAAATCTCAAGCAAGATGGGCATGGGAAACCGCCATC
GCTTCGAGTATAGGCCAGGGGCCCAGGGCAGTGTCAGCGACCAATTTT--------------------------------
----------------------GCCATGCTGCCGTGCCGATGGGCC-ATCCGGCCCACAGACGCCAGTGGC---------
---------------------------CCGGCCCGCTCCACCTCGCCTAGAGA-----GAGAATGGCCACGTCGGCA---
--------------ACCTTTCCTCTCCCGCACTTCACACTTGACACCACCCAAAAAAAACCTAGCAGAGCAGCAATGGCG
TCCCCGCCGCCG-------------CCGTCC----------------TCCTCCTGCTCCTCGTCCCCGTCTC--------
-CCATCCACTGGCCTCAGGCCTGGAGTCCTCG---------------CCGTTCGACGCGGCGCTGGCGGCGCTGCAGGGC
CGGATGGGCTACGCGTTCCGGTCCCCGGACCTGCTCCGCCGCGCGATGACGCACGCCTCCTACTCGCGCGAGAACGGCCG
GGCGCTGGCCGTGCTCGGCCTGGCCGCGGCGGAGTCGGCCGCCGCGCTGCGGGCCCTCGCCGCCGACCGCGACGCGCCGG
CCTCCGCCGTCTCCCGCGCCGCGCGCGACGCCGCGGGGGAGCCCGCCTGCGCCGCGGCGGGCGCCCGCGCGGGCATCCCG
GGCGTCGTGCGCGTCGCCGGGTCCACCAAGGCCTCGGCCCCGCCCGTGGTCTGCGGCGCCCTCCGCGCGCTCCTCGGCGC
CGTCGCCGTCGACAACGGCACCGCCGCCGCCGCCGCCGAGGTCTTCTGGCGCCTCCACGTCATCA------CC-------
--------GCCGCCGCCATGTGACGCGTGCACGAGTAATAAATCATCCAAGATGGTTTGCACTTGCACATCAGTGTTCAC
AAGTATATTTACTAGTAGGATAAGTGAAGCTGCTGCTGCAATCTACCTCT--TATGTAAATTATGAACTGCCACCTAGAG
CCTGGATGAAAATCATCAACTTCCACTTTGATTTCGTATGCAAATTATGGACAGTCACTCAGAGCTCTGATGAAAATCAT
GAACCTCCACTTTGATCTTGTATGCAAATTATGAACTGCCGCTTCGAGTTGTGCTATGTC--------------------
------------------------TGATTTGAGATGGATCATGGAACAAGAGTTCCTTGTCGAATTCAGTTACACTGCGT
TTGGATGTCTTCATTGGGGGGCTTGTATTGGATTTGGTATTGGTAAGTTTCATTTCACCTGTTTGGCTGGACACTAAATT
GGTGGCCGGTAATGAAACTAAATTCAGGCTGAAATCACTCCCACGCAAACAGTCTGCCCACAATACGGAGGCCTCCGGCT
CTGAATTGTGCTGAAATCGCCCATCCCGCAAAACGTACCGGTTCACTTCCCTTTTCCCCCCTCGCGAACAGATAAGGAGA
AAAGGCAGGAAGGGAGATAGCGAGCTCCGAGGTGGGCGGCGGCTGCGAAGCTCGGCGGCGTCCAGGTGCGTTCCCTCCTC
GGCCCCCTCCTCCTGCAACATCTTCCGGCACCGCCGCATCTCACCCGTCCCCTCCACTGACGCGTCGTGCACTGCCTCCA
GCTCGGCGGCCATGGGCGTCCGCCACAGGCCCGTCCGCTCGACCGCCTCCGGCGCGGCGACTATGGGTGTCCGCCGCTGC
ATTTAGTTGCTGCAGCTGCGGCTACTAGGGGGCTGGAGTAGACGACGAAGGACTGTCGGTGCTGAAGCTTCCTGACCGTG
CTTGCCTACTCTTCGGTTTCTATGTGTGTGGATGTGGGCAAATTTAATGATTCTTGTGCGTATGTGTATGGACAAATTTG
ATGTTTCCTGTAGATAGAAGGATAAAAGCTTCACAATCAATGTGAATATGCAATTTCAATGTTTGTCATCCAAGCAGGAT
TTAGTATTGAAACCTCACAGATTTCATGAGGCAATTCAGTGAACAACCAAACAAGTGAATTCGTATTCATGTCCATTTCA
GTTTCCTTGCTGAAATGGTATTCCAACCAATTCATTACAGAGCCTTTCAATATGGACATCCAAACGCAGCGTTAACCTAA
ACCCATGTTTGAGCTTGAGAATCAAA---------------------------ATCCCTCTGTTCCATTGGAACTAAAAC
CATGCCAAAAGCCTTCAAAAAAAAAAACCATGCCAAAAGGTATTTACCAAGACCAATGAATTTTCTTTTTGACCAAACAT
GCTACTTGTAGTTCCATCACTTGAATGACATGGAATCAGCATGAGAAACAAGCAAGGCAAAAATGGTGTCAGTACATGAT
GTTACATAGATAAGCATCATTTTGACATTAGTACAGGGGCCAAGACCTCAAAGGCAAGTACCAAACGACTACACTCGACT
CTTTTGAGCATTACATCAGCAACATCAACCTCGTATTTTTCTTCCCTCGCTGAACCAAAGGC------CATCAGGGACTC
ATCTTGTCCAAAATTTG--ACACTCCTATTACATAACGAAGGGAATGATCCATCACAGGACA-G-----CTACTTCCTCG
CCTTCTTGCTCCGGTGCGTGTTCTCGGGCGTCGAGCCGTCCTGCTTGCGTTTCTTGTTCAGTTGCTTCGCCTTCCTGGCT
GCCACGGCGGGCCGCTTGGCCTTGCGGGCACTGTTGCTTTGTCCCGTCTCGCTAGGCCTGCCTTGCTGGTTCCCTTGGTT
GACGGGGCGCCGGGCCACCTTCACCTTCTTCACGACGCCAGATTTGGTCGACTTCAGGCCTTGGTAAGACAGGCTTGCCG
GCGCCTTGCGTTTGTTGCTGTCGCTGCCTTCACGGGACTTGCTGCCTGGCGTGAAAGGTGCCTTCT
>chr5B_819
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----------------------GCCATGCTGCCGTGCCGATAGGCCCATCAGGCCGACATACGCCAGTGGCCCGAGTCCA
GCCCGGCCCGTACCCAGCCCAAGGGCTCTGACCCACTCCACCTCGCCAACCAGAGAATGAGAATCGCCACGTCGACGCAA
CCGGCCGGT----CACCTTTCCTCTCCCGCACT------CCACCC-----------AAACCTACCACAGCAGCAATGGCG
CCCCCGCCGCCGGCAACGCTCGCCGCCGTCC----------------TCCTCCTCGTCTCCGTCTCCGTCTCCGTCGCCT
CCCACCCACTAGCCTCGGGACTGAAGTATTCCCCGGCGGCCTCGTCTCCGTTCGACGCGGCGCTGGCGGCGCTGCAGGGC
CGGATCGGCTACGCGTTCGGGTCCCCGGACCTGCTCCGCCGGGCGATGACGCACGCCTCCTACTCGCGCGAGAACGGCCG
GGCTTTGGCCGTGCTGGGCCTGGCCGCGGCGGAGTCGGCCGCCGCGCTGCGCGCGCTCGCAGCCGACCGCGACGCGCCGG
CCTCCGCCGTCTCCCGCGCCGCGCGCGACGCCGCGGGGGAGGCCGCCTGCGCCGCGGCGGGGGCCCGCGCGGGGATCCCG
GCCGTCGTGCGCGTCGCCGGGTCCACCAAGGCCTCGGCCCCGCCCGTGGTCTGCGGCGCCCTCCGCGCGCTCCTCGGCGC
CGTCGCCGTCGACAACGGCACCGCCGACGCCGCCGCCGAGGTCTTCTGGCGCCTCCACGTCGTCGCCGCCTCC-------
--------GCCGCCGCCATGTGACGCGTGCACGAGTAATAAATCATCCAATATGGTTTGCTGCTGCTGCT----------
----------------------------GCTGCTGCTGCAATCTACCACCTCTATGTAAATTATGAACTCTC--------
------------------ACTTCCACTTTGATTTTC--------------------------------------------
--------------------TATGCAAATTATGAACTGCCACTTCGAGTTGTGCTATGTTTGGTGTGATATCCATCCAGA
TCCAGGAATGCGCGATCGAATTTCCGTTTTGAGATGGATCATGGAACAAGAGTTCCTTGTCGAATTCAGTAA--------
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-------------------------------------------------------------------------AACCTAA
ACCCATGTTTGATCTTGAGAATCAAATGCTTCTGCATTTGACACTGTCAGTCAATCCCTCTGTTCCATTTGAATTTAAAC
CACAATAAAAATTATGGAATGG----------------GGTCTTTACCAAGACCAATGATTCTTTTTTA--ACCAAACAT
GATACTTGTAGTTCCATCACTTGATTGACATGGG------------AACAAGCAAGGCAAAAACGGTGTCAGTACATGAT
GTTACATAGATAAGCATCATCTTGACATTAGTACAGCGGCCAAGACTCCAAAGGCAAGTACCAAATGACAACACTCGACT
CTTTTCAGCATTACATTAGCAATGTCAACCTCGTATTTTT-TTCCCTCGCTGAACCAAAGGC------CATCAGGGACTC
GTCTCATCCAAAACCCTCAACACTCATATTACAAAGTGAAGCGAACAATCCATGACAGGGGTGG-----CTACTTCCTCG
CCTTCTTGCTCCGGTGCGTGTTCTCGGGCGTCGAGCCGTCCTGCTTGCGCTTCTTGTTCAGCTGCTTCGCCTTCCTTGCT
GCCACGGCGGGCCGCTTGGCCTTGCGGGCACTCTCGCTTTGTCCCGTCTCGCTAGGCCTGCCTTGCTGCTTCCCTTGGTT
GATGGGGCGCCGGGCCACCTTCACCTTCTTCACGACGCCGGATTTGGTCGACTTCAGGCCTTGGTAAGACAGGCTTGCCG
GCGCCTTGCGTTTGTTACTGTCGCTGCCTTCGCGAGACTTGCTGCCTGGCGTGAAAGGTGTCTTCT
>SNPs
SS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------
-----------------------SS----S-SSSS--S--------------------------------S-SSSSS-SS
SS-SSS-SSSS-SSS--SSSSSSSSS-S---SSSSS--SS-SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------------S---------------SSS------SS---
S----------------------S-------------------------S-S----------------------------
---------SSSS------------------------SS-----------------------------------------
----------------------------S-SSSSSSSSSSSSSSSSS---------------------------------
---------S--------S-S-------------------------S---------------------------------
S-------------------S--------------------------------------------------------S--
S-----------------------------------------------------S-------------------------
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--------------------S-----------------------------S--------------------------S--
-------------------------------------------------------------------------SSSSSSS
SSSSSSSS---------------------SS------S----------S--------S-----S-------S------S-
--------------------------------------------------SS------------S---------S-S---
-S-----------S------------------------------------------------------------------
--------------------------------S----------------------------SS-----S-----------
-------S-----S--------SS-----S--S-----------S-----S-------S-S-------------------
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-------------SSS------------------------S-----S----SS--------S--------S--------S
--S-----------------------------------S-------S------S----------S-S----S--------
-----------------------------------S-------------------S------------------------
-----------S---------------S------------S--------------------------------------S
---S-----------------------------------S---------S-S----S-----SSSSSS-------SS---
--------------------------S--------S------------------------SSS-SSSSS-----------
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--------------------S--------S-----------------------------------------S--------
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------------------------------------------------S---S-------------
>forward_567
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-------------------------------------------------------------------CGCGATCAATGAA
CGACCAC-------------------------------------------------------------------------
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>reverse_1745
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----------------------------------------------------------------CAACTGCCACTTCGAG
CTTG----------------------------------------------------------------------------
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