>input_sequence_76787
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---------------------ATGGTGGGCACTCCAACAATATCCGTTGCTATGGTTCTCGTCGTGCTTGCCCTCATGTC
TTATGGGCTCCCCTCAGCACATGCCGATGTCGCCTTCATATCCAACACATGCAAGAAAACCAAGAACCCCGCGTTGTGCG
AGGATGTGCTGAGCTACCATGAAAATAGCACCCAGGCCTCCACCGTGCATGAGCTCGCCAGCATTGCGCTGGAGATAGCC
ACCGCCATCGCAAAATTCAACAGCAAGAACTTCGGAGTCGGGGCCAGATACAACCAGGGCACACCCGTGGAGGACGCTCT
GGACGTTTGCCTCCAGGCCTACGATGATGCTATAGATAACCTCAAGGTCCTTGCCAAACATAGTCTCCATGTGGGGGACT
ATGCCGATGCGTTGAGGAAGGTGTTGGACGCTAAGGCTGCCGGTGATGTGTGCGATAATGCGCTCAAGCGGATCAAAGAG
GATTTCGCTGTTGAAAGTGATCGCAAAATGACGGAGCGATGTGGCGTCACTGCTGAACTAATCGGGCTTCTTATCCACAA
GTGA----------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G564900
CATTTATATATAACCCCTCCCATAAATTATACTATCTTAGTGTTGGTTTTGGTGCTAAGAACTATAGCAAGATTACGATA
TAGTAACTCTCTCTTTCCTCA-------------------------------------ATGACTATGATATAGTATAACA
TGGAGCACTATGATATAGTATAACATGGGGCACTAGGACTACCCTTATGTATCAAGATCTGTCTTTCGCTTTCTCATA--
--------ATTAATTTGAGAATTCTAAACTCAATGAAAGAAATAAAATATTTATATTTTGGGTCAAAATTTTGACCATCT
ATATGACTAACAAAATATGGTTTATGTGCTTCAAAATTATAATGTTGGATCTGTATTCGGAAGAGGATTTCCACTGTATA
ATTTTTGTGACATATATATTTTATTTTAGTAGTTAAATTTATGGTAAAAATTCAACCCTAAATACGAGGGGGCCAATATA
TCCGGACGGACAAAGTACTCAAGAAATTTACTCGGTGTCTTGTGACATCGGTTGGGCCAATGTGGTT------------C
CATATGTAGTGTTCCTCTGGCCATCTCTTGCTACTCTCGTTCGGTGTGTCCTAGTTT-TCATGATTGGCCAATCCACTAT
TAGCCATTTATTAGAATTTAGAATTTGATTTGATACAAATAAAGTCAGTACATTTACTATACTTTT-TAGGCAACTCATT
TATTATTGGGTTCATTAGGTCTTTGTATCAAGATTTATCTTGCGTCTAGAAAGAAGAAGATGTTAATTTGGGAATTCTAA
ACTCACCAAAAGCAACGAGTGCGTTCAGTTTTCTATTTCCTACATTATACATTTAATAACTAAATCTATTTGATTCGCTG
GTACTATTATTCATTTGATTTGCTATTAATTTCATGAAGCAGTATGAATAAATACTCAATAATTAATGCGGACAATAACT
TTAGAATTTTCTCTGGCACGAAGTCTTGTATATAGAAGAAAGAGTCGTCATGTCCTGCCCCAACACAACAACACCTAGCT
AGGTGCAAAGTGCAAACTACAATGGTGGGCACTCCAACAATATCCGTTGCTATGGTTCTCGTCGTGCTTGCCCTCATGTC
TTATGGGCTCCCCTCAGCACATGCCGATGTCGCCTTCATATCCAACACATGCAAGAAAACCAAGAACCCCGCGTTGTGCG
AGGATGTGCTGAGCTACCATGAAAATAGCACCCAGGCCTCCACCGTGCATGAGCTCGCCAGCATTGCGCTGGAGATAGCC
ACCGCCATCGCAAAATTCAACAGCAAGAACTTCGGAGTCGGGGCCAGATACAACCAGGGCACACCCGTGGAGGACGCTCT
GGACGTTTGCCTCCAGGCCTACGATGATGCTATAGATAACCTCAAGGTCCTTGCCAAACATAGTCTCCATGTGGGGGACT
ATGCCGATGCGTTGAGGAAGGTGTTGGACGCTAAGGCTGCCGGTGATGTGTGCGATAATGCGCTCAAGCGGATCAAAGAG
GATTTCGCTGTTGAAAGTGATCGCAAAATGACGGAGCGATGTGGCGTCACTGCTGAACTAATCGGGCTTCTTATCCACAA
GTGATAGATCATAAGCCATTCTCGGCTCATCTATGTATTCCTATCAATAAATAGTTATTCGGTCGTCTATCAACATTGTT
TTGGTCATTGCTGCAATTATGAATTATTTTAGATACACTAAAATT-GGAATCCTAGAATCCCTCTCAAGCATCCGCACTA
AAGAGTGGTCCAATCTCAGACTCTAAACATTCATGGGAATTTTAAACCCACGAGCATGGGCTAGAGAATTAGATTAGTTC
TTTTAGGGGAAAAGGGGGGTCTCTTTACTCATTAATATTTATGGGGATACAAATTATGTAAGGAGGTTCACATTGACACA
TATTACGTCCAATGCCCATAGATGATGGTTTCTTAGAGATACTCTAGCAGAGTAGCCATATCAGCATGGTCGCCATATAA
TAATCGACATTATGGAGATTTTGGCCGAAAAATCACTGTAGCTAAGTCGCCATCCCGACCTTGATCGCCATAATAATCAT
CATTATGGAGATTTTGGCCGAAAACTCAGTCTAGCAAAGTCGCCATCCCGCCCTTCCTCGCCATAATTGATGGAGCATGC
TGAAAACCAAACCAGCAGCGCCCCATATTTGGCGGATGGGGGTATATGGAACTCACTCCATTGGGAAATAGGTTTGGCAT
GAAGGACATTTCCCCTTCCCACTGCTCTCCCCGCTCGCATCACCGCCGATTTCCCTTCCTCGTTGTAGTGTCGCCTTTGA
ATGCTTCTGGCCATCCTCAATCCCCGTCAATGACACCATAGTTGCAAACTCGACCCCTGTGTTAGATCCATTCGTTCGAA
GTCGGATACATCGAATTCTACTATCATTACTCTTGCGCTTTTGACGGCCGACCTCAACCCTGTTGGAGAATACTCCTAGA
CGGAGGAGGCTATGCTGCCGCGTGGAGGCAGTGTCCTCCCCCTGCCGGTGCAACAAGGGTCCTTGACAAAGGGAACGAAG
AAGACTAGAAAGAGCCACATCCGTGCCTTTGCCCCTCCTCGCTTC
>chr5D_4
---TTATATATAACCCCTCCCATAAATTATATCTTA-TAGTGTTGGTTTTGGTGCTAAGAACTATAGTAAAATTAAGATA
TAGTAACTCTCTCTTGCCTCATTAAATAGGGCGTCACATCAGATTTTTCTTATGTGTCATGACTATGATATAGTATAACA
TGGAGCACTA-------------------------GGACTACCCTTATGTATCAAGACCTGTCTTCCTCTTTATCATAAA
GAACATATATTAATTTGGGAATTCTAAACTCAA---AAGCAATAAAATATTTATATTTTGAGTCAAAACTTTGACCATAT
ATATGACTAACAAAATATGGTTTATGTGCTTCAAAATTATAATGTTGGATCTGTATTCGGAAGATGATTTCCACTGTATA
ATTTTTGTGACATATTTTTTTTATTGTATTAGTTAAATTTATGGTAAATATTCAATCCTAAATATGAGAGGGCCAATATA
TCCGGACAGACAAAGTAATCAAGAAATTTACTCGGTGTCTTGTGACACAGGTTGGGTCAATGTGGGTCCACCCCTGTGGC
CATATGTAGTGTTCCTCTAGCCATCTCTTGCTACACTCATGTCAATTTGTTCCACTTGTCATGATTTGCCAATCCACTAA
TATCCATTTATTAGAATT-------TGATTTGCTACAAATAAAGTCAGTACATTTACTATATTTTTGTAGGCAACTCATT
TATTATTGGGTTCACCAGGCCTTTATATCAAGATTTATCTTGCGTCTAGAAAGAAGAAGATGTTAATTTGGAAATTCTAA
ACTCACCAAAAGCAATGAGTGCATTCAATTTTT--TTTCCTACATTATACATTTAATAACTAAATCTATTTGATTTGCTA
GTACTATTATTCATTTGATTTGCTATTAATTTCATGTAGCAGTATGAATAAATACACAATCATTACTATGGACAATAACT
TTAGAATTTTCTCTGGCACAAAGTCTTATATATAGAAGAAAGAGTCGCCATGTCCTGCACCAACACAACAACACCTAGCA
AGTTGCAAAGTGCAAACTACAATGGTGGGCACTCCAACAACATCCA-TGCTATGGTTCTCGTCGTGCTTGCCCTCATGTC
TTATGGGCTCCCCTCAGCCCACGCCGATGTCACTTTCGTATCCAACACATGCAAGAAAATCAAGAACCCCGCGTTGTGCG
AGGATGTGCTGAGCTACGATGAACATAGCACCCAGGCCTCCACCGTGCATGAGCTCGCAAGCATCGCGCTGGAGATAGCC
ACCGCCATCGCAAAATTCAACAGCAAGAACTTCGGAGTCGGGGCCAGATACAACCAGGGAACACCTGTGGGGGACGCTCT
GCTCGCCTGCCTCATGACCTATGGTGATGCTATAGATAACCTCGAGGTCCTTGCCAAACATAATCTCCATGTCGGGGACT
ATGCCGATGCGTTGAGGAAGGTGTTGGACGCTAAGGCTGCCGGTGATGTGTGCGATAATGCGCTCAAGCGGATCAAAGAG
GATTTCGCTGTTGAAAGTGATCGCAAAATGACGGAGCGATGTGGCGTCACTGCTGAACTCATCGGGCTTCTTATCCACAA
GTGATAGATCATAAGCCATTCTCGGCTCATCTATGTATTCCTATCAATAAATAGTTATTCGGTCGTCTATCAACATTGTT
TTGGTCATTGCTGCAATTATGAATTATTTCAGATACACTAAAAAT-GGAATCCTAGAATCCCTCTCAAGCATCCGCACTA
AAGAGTGGTCCGATCTCAGACTCTAAACATTCATGGGAATTTTAAACCCGCGTGCATGGGCTAGAGAATTAGATTAGTTC
TTTTAGGGGAAAAGT-GGGTCTCTTTACTCATTAATATTTATGGGGATACAAATTATGCAAGGAGGTTCACATTGACACA
CATTACGTCCAATGCCCATAGATGATGGTTTCTTAGAGATACTCTAGCAGAGTAGCCATATCAGCATGGTCGCCATA--A
TAATCGACATTATGGAGATTTTGGCCGAAAACTCACTGTAGCTAAGTCACCATCCCGCCCTTGATCGCCATAATAATCGC
CATTATGGAGATTTTGGCCGAAAACTCAGTCTAGCAAAGTCGCCATCCCGCCCTTGTTCGCCATAATTTGTGGAGCATGC
TGAAAACCGATCCAGCAGCGCCCCATATTTGGCAGATGGGGGTATATGGAGCTCACTCCATTGGGAAATAGGTTTGGCAC
GAAGGACATTTCCCCTTCCCACTGCTCTCCCCGCTCGCATCACCGCCGATTTCCCTTCCTCGTTGTAGTGTCGTCTTTGA
ATGCTTCTGGCTATCCTCAGTCCCCGTCAACGACACCATAGTTGCAAACTCGACCCCCGTGTCTAATCCACTCGGTT---
----GATACATCGAATTCAACTATCATGACTCTTGTGCTTTCGACGGCCGACCTCAACCCTGTTGGAGAATACTCCTAGA
CGGAGGAGGCTATGCTGCGGCGTGGAGGCAGTGTCCTCCCCCTGCCGGTGCAACAAGGGTCCTCAACAAAGGGAACGATG
AAGACTAGAAGGAGCCACATCCGTGCCTTTGCCCTTCCTCGCTTC
>chr4D_738
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------------------------------------------------------------------------------AA
ACTCACCAGAAGCAACCAGTGCATTCAATTTTTTATTTCCTACATTATACATTTAATAACTAAATCTATTTGATTTGCTA
GTACTATTATTCATTTGATTTGCTATTAATTTCATGTAGCAGTATGAATAAATACACAATCATTAATGCGGACAATAGCT
TTAGGATTTTCTCTGGCACGAAGTCTTATATATAGAAGAAAGAGTTGCCATGTCCTGCACCAACACAATAATACCTAGCT
AGGTGCAAAGTGTAAACTACAATGGTGGGCACTCCAACAATGTCCATGGCTATGGTTCTCGTCGTGCTT-CCCTCATGTC
TTATGGGCTCCCCTCAGCCCACGCCGATGTCGCTTTCATATCCAACACGTGCAAGAAAACCAAGAACCCTGCATTGTGCG
AGGATGTGTTGAGCTACGATGAACATAGCACCCAGGCCTCCACCGTGCATGAGCTCGCCAGCATCGCGCTGGAGATAGCC
ACCGCCATCGCAAAATTCAATGGCAAGAACTTCGGAGTCTGGGCCAGACACAACCAGGGCAGACCTGTGGGGGACGCTCT
GCTCGCCTGCCTCATGGCCTATGGTGATGCTATAGATAACCTCGAGGTCCTTGCCAAACATAGTCTCCATGTCGGGGACT
ATGCCGATGCGTTGAGGAAGGTGTTGGAGGCCAAGGCTGCCAGTGATGTGTGCGATAATGCGTTCAAGCAAATAAAAAAG
GATCCCCCTGTTGAAAGTGATCA-AAAATGATGGAGCGGTGTGGCGTCACTGCTGAACTCATCGGGCTCCTTATCCACAA
GTGATAGATCATAAGCCATTCTCAGCTAATCTATGTATTCCTATCAATAAACAGTTATTCGGTCATCTATCAACATTGTT
TTGGTCATTGCTGCAAT-ATGAATTATTTTAGAGACATTAAAAATGGGAATCCTAGCATCCCTCTCAAGCATCCGCACTA
AAGAGTGGTCTGATCTCAGACTC-AAACATTAATGGGAAT----------------------------------------
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>SNPs
SSS----------------------------SSS-SS------------------------------S--S----S----
---------------S----------------------------------------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSS----------------------S-------S-S----S-------
-----------------S---------------SSS---S--------------------S-------S---------S-
----------------------------------------------------------------S---------------
---------------S-S-------S--S-------------------S------S--------S---S-----------
-------S---------S-----------------------------SS-------S--------S--------------
------------------S---------------S---S-SSSSSS-SSSSSSSS-----------S------------S
--S---------------SSSSSSS-------S----------------------------S------------------
--------------SS---S----S----------------------------------------------S--------
----------------------S----S----S------------------------------------------S---S
------------------------------------S------------------S----S-------------------
---------------------------S-------------------S----------S---------------------
---------------------------------------------S----------------------------------
------------------S--S-----------S----------------------------------------------
-----------------S-----S----------------------------------------S---------------
-----------------------------------------------------------------S----S---------
-SS--SS------SS------S-S-------------------S----------------------------S-------
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-----------------------------------------------------------S--------------------
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-------------------------------------------S------------------------------------
-----------S-------------------------------------S--S---------------------------
--------------SS------------------------------------------S---------------------
S----------------------------------------------------------------------------SS-
-------------------------------S----------------S--------S--------------------SS
-------------------------------------------------------SS-----------SS----------
--------S-S----------------------S----------------S----------------------------S
-------------------------------------------------------------------------S------
-----------S-------S----------S--------------------------S----SSS-----S---S-SSSS
SSSS--------------S--------S-------S-----S--------------------------------------
------------------S--------------------------------------------SS-------------S-
----------S-----------------------S----------
>forward_488
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--------------------------------------------------------------------GGGGCCAATATA
TCCGGACG------------------------------------------------------------------------
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>reverse_2340
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-------------------ATCCCCGTCAATGACACCAT-----------------------------------------
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---------------------------------------------
