>input_sequence_76772
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------------------------------------------------------------ATGGCAAGCGCAGCAACATC
CGTAGCTATTGTTCTTATTCTGATCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCC
GGATGTGCCTGAAGACCACGAACCCCATGTTGTGCATGGTTGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACG
GAGCAGGACGTCGGCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAA
CAAGGGCAGCCTAGGCAAGCCCGAGGGAGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAACCTCA
AACACAACGCCCGAACCGGTTTCGACCGTGGGGATTATGTTGGCGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTTGGG
GATATCTGCGAGAATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCACGAGATGACTCAGCGATG
TGGCGTCGCGGCGGAACTCATTGGCCTGCTTACCCACAAGTGA-------------------------------------
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>chr3D_1_TraesCS3D01G004900
ATAGTTATTATTGGTTTGGTACGAAATGAATCTTCCTTCTCAAAATAATTACGGAACTCATTAAATGTATACAATGAGAG
TACATTTATTTGTTGAATCACTAAATATTTTGTACAT------CTATGCGAGTATGCGGCAAGTAGTACTCATCAAATCC
TTCATTTATTTGTTTGATCTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCAGATTTTTCGAG
GGTGGCGTCCACAAATAAGAAGAGTCG-CATGATGCACCAACACAACAACACCTTGCTAGGTGCAAAGTGCAAAC-AACA
ATGGCGAGCGCCACAACATCCAGAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCATTCTTCCCTCTGATT
TACTTTGTGTGGGGGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATAT
ATGCTTGACCCTTAGCTTTCAAAGTCGGATAAATGCTGTCCCACAACCCTACCCAGAGTGGTCACTGTCGCATAATATTG
GTTGCATATGTCTTTCAATATACCTTTA-TTTGCTGATTTGTTATTCCATTGCTGGTCATTTAGAA-TATACGATTTGCT
A-AAATTAATGGCAGTCCATTCACTATTTATTTATTGTAAGAGCACATTTATTACTCGATCTGTAGGATTTTGTTTCATT
-TTTTTCCAACATAAAGAAAAATGTTCACTTGGAAATTCTAAACTCAGCGGAAGTATCGAGTGCATTTATTTGTTGCTGC
ATTGCACATTTAATGACTAAATCACTGTTTGATGAGCTATATTCATTTGATTTGTTGTTACATTTGATGCAGCGAAAGAA
ATAGATATACCATCATTAAGGCGCATCATATCATAAAGATTTTCTCTTGTGCAGATCTTAC--ATATATAAGAAAGAGTT
GAGCGTACTGCACCAACAGAACA------ACGCCTAGCTAGTTGCAAACTGAAAACCACAATGGCAAGCGCAGCAACATC
CGTAGCTATTGTTCTTATTCTGATCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCC
GGATGTGCCTGAAGACCACGAACCCCATGTTGTGCATGGTTGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACG
GAGCAGGACGTCGGCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAA
CAAGGGCAGCCTAGGCAAGCCCGAGGGAGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAACCTCA
AACACAACGCCCGAACCGGTTTCGACCGTGGGGATTATGTTGGCGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTTGGG
GATATCTGCGAGAATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCACGAGATGACTCAGCGATG
TGGCGTCGCGGCGGAACTCATTGGCCTGCTTACCCACAAGTGATCGATCATATATAAGTTTTGGCTCATATGTGTGTGCT
CCCTTCAATAATTAATTAGTTGTTCGTGTAGCAACATGTTTTGTCATTGATGCAACTGTGAAATAACGAGCTGAACAACA
CACAAAACACCAATCTTACCAAGTACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATCACTACTTTAGTATTCTAAAC
ACTTTTATATAATTTACGGAGGGAGTAGACAACTACTAGTGCCAAAAGCCACCATATGCATGGTAGCTCCTGTTCTGGGC
AGATTGATGTATCAATGATGACATATGCTTACTGATCTAGGGCACCGAACCGACGAGTTTTTCTTTTTCTTACAGCAACA
TGCATATTTAATTAGATGAGCTATTTCATCCACAACAATTTCAATCTCGTCAACTCGAGATCATAAGCTTTTTTTGGCGG
CGGCCCACATCCTCTCTCTCCGTGACTACGTTGCCTCTCTGTCACTCTATGTATCTTCGTCTACCTCTCTTCCGTGGTGT
TCATCAGAGAAATTCATAGAGAGAGACAGAGACACACACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGTCTCCAGATCACGGCTGAAATCCAACAAAGACGACCTGGCTAGCTGGACATGGGGTGCACCGGGGCTTGGCTA
GTTTTTTTCTTAAAAAGGAGGAAGACCCTGGCCTTTGCATATGGATGATGCATGCAACCACTTTATTAATTATTCATAAA
AATCTTACAAAGTAATACATCACCATTTTGGCAACATCTATCGCTACTTCTATCCACTTGATGAAGGGGTGCCGATAGTC
CGAGCCGAATACCAAACAGACCCCGCATCAAAGCCTAACATCTAAAACCGAAGGCCCCAACCAAGCCACATTGCTGGGTC
TGGGGCACACACTGGTTCGGCGCACTCTCAGAGGCGGCCGCCGCCGTCTTCCACCGATCCATCTTCAGAACAGTTAGGAA
CGG
>chr3B_1
ATAGTTATTGTTGGTTTGGTACGAAATGAATCTTCCTTCTCAGAATAATTATGGAACTCATTAGATGTATACAATGAGAG
TACATTTATTTTTTGATTCGCTAAATATTTTGTACATCTATCACTATGCGAGTATGCGGCAACTAGTACTCATCAGATCC
TTCATTTATTTATTTGATTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCATATTTTTCGAG
GGTGGCGTCCACAGATGAGAAGAGTCACCTTGATGCACCGACACAACAACACCTTGCATGGTGCAAAGTGC-AAA-AACA
ATGGCGAGCACCACAACATCCACAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCGTTCTTCCCTCTGATT
TACTTTGTGTGGGGGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATAT
ATGCTTGACCCTTGGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCGGAGTGGTTATTGTGGCTTAATATTG
GTTGCATATATCTCTCAATATGCATTTA-TTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAACTATATGATTTGCA
A-AAAATAATGGCAGTACATTCACTATTTATTTGTTGTAAGAGCACATTTTTTTTTCAATTTATTGATG-----------
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-----------------------------------GCTATATTCATTTAATTTGCTGTTACATTTGATGCAACAAAAGAA
ATAGATATACCATCATTAAGGCGCATCATATCATAAAGATTTTCCCTTGTGCATATCTTAC--ATATACAAGAAAGAGTT
GAGTGTACTGCACCAACAGAACA------ACGCCTAGCTAGTTGCAAACTAAAAACCCCAATGGTGAGCGCAGCAACATC
CATAGCTATTGTTCTTATTGTGATCGCCGGCGTGTCCTCGGGCCTCCCTGCCACCTATGGTGACACCAACATGGCCGCCC
GGATGTGCCTGAAGACCACGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACG
AAGCAGGACGTCGGCAGCGTCGCGCTGCAGATCGCGAGTGACACTGCTGAGTATAACCTTGGGGTCATCAACAACCTAAA
CAAGGGAAGCCTAGGCACGCCCGAGGGAGGCGCGCTGGCGCAATGCCTTTGGGCCTATCAAGACGCCGACAACAACCTCA
AACACAACGCCCGAACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTGTCGGGCGCCCAGATCGTCGGG
GATATATGCGAGAACGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATG
TGGCGTCGCGGCGGAAGTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGTGCT
CCCTTCAATAATTAATTAGTTGTTCATGTAGCAACATGTTTTGTCGTTGATGAAATTGTGAATTATCGAGCTTAACAACA
CACAAAACACAAA-CTTGCCAAGTA-------------------------------------------------------
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>chr3B_1
ATAGTTATTATTGGTTTGGTATGAAATGAATCTTCCTTCTCAGAGTAATTATGGAACTCATTAGATGTATACAATGAGAG
TACATTTATTTTTTGATTCGCTAAATATTTTGTACATCTATCACTATGCGAGTATGCGGCAACTAGTACTCATCAGATCC
TTCATTTATTTATTTGATTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCATATTTTTCGAG
GGTGGCGTCCACAGATGAGAAGAGTCACCTTGATGCACCGACACAACAACACCTTGCATGGTGCAAAGTGC-AAA-AACA
ATGGCGAGCACCACAACATCCACAATTGTGGAAGTTACCTCATCTTCTTCATATCCGCCAAATCGTTCTTCCCTCTGATT
TACTTTGTGTGGGGGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTTTGAAACAATAT
ATGCTTGACCCTTGGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCGGAGTGGTTATTGTGGCTTAATATTG
GTTGCATATATCTCTCAATATGCATTTA-TTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAACTATATGATTTGCA
A-AAAATAATGGCAGTACATTCACTATTTATTTGTTGTAAGAGCACATT-TTTTTTCAATTTATTGATG-----------
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-----------------------------------GCTATATTCATTTGATTTGCTGTTACATTTGATGCAACAAAAGAA
ATAGATAGACCATCATTAAGGCGCATCATATCATAAAGATTTTCCCTTGTGCATATCTTAC--ATATATGAGAAAGAGTT
GAGTGTACTGCACCAACAGAACA------ACGCCTAGCTAGTTGCAAACTAAAAACCCCAATGGTGAGCGCAGCAACATC
CATAGCTATTGTTCTTATTGTGATCGCCGGCGTGTCCTCGGGCCTCCCTGCCACCTATGGTGACACCAACATGGCCGCCC
GGATGTGCCTGAAGACCACGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTATGCCTCCACG
AAGCAGGACGTCGGCAGCGTCGCGCTGCAGATCGCGAGTGACACTGCTGAGTATAACCTTGGGGTCATCAACAACCTAAA
CAAGGGAAGCCTAGGCACGCCCGAGGGAGGCGCGCTGGCGCAATGCCTTTGGGCCTATCAAGACGCCGACAACAACCTCA
AACACAACGCCCGAACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTGTCGGGCGCCCAGATCGTCGGG
GATATATGCGAGAACGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATG
TGGCGTCGCGGCGGAAGTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGTGCT
CCCTTCAATAATTAATTAGTTGTTCATGTAGCAACATGTTTTGTCGTTGATGAAATTGTGAATTATCGAGCTTAACAACA
CACAAAACACAAA-CTTGCCAAGTA-------------------------------------------------------
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>chr3A_17
----------------TGGTACGAAATGAATCTTCATTCTCAGAATAATTATGGAACTCATTAAATGTATACAATGAGAG
TACATTTATTTGTTGATTCACTAAATATTTTGTACAT------CTATGCGAGTATGCGGCAACTAGTATTCATCAGATCC
TTCATTTATTTATTTGGTTTGCTATTATACTCATGTAGTAAAAGGAATAAATATGGCATAATTAAGGCAGATTTTTCAAC
AGTGGCGTCCACAAATAAGAAGAGTCGCCATGATGCACCAACACAACAACACCTTGCTAGGTGCAAAGTGC-AAACAACA
ATGGTGAGCGCCACAACATCCACAATTGTGGAAGTCACCTCATCTTCTTCATATCCGCCGAATCATTCTTCCCTTTGATT
TACTTTATGTGGGGGAATATATTTGGTCTCTGAACAATTATTCAAGTTTGGGTTTGTCCCCCTCACCTCTGAAACAATAT
ACGCTTGACCCTTAGCTTTCAAAATCGGATAAATGCTGTCCCACAACCCTACCCAGAGTGGTCACTGTCGCATAATATTG
GTTGCAGATATCTCTCAATATACATTTTTTTTGCTGATTTGCTATTCCATTGCTGGTCATTTATAA-TACTCCATCTCAC
GGAAATTAATGGCAGTACATTCACTATTTATTTATTGTAAGAGCACATTTATTACTCGATCTGTAGGATTCTGTTTCAAA
ATTTTTCCAACATAAAGAAAAATGTTAGTAACTTGGATCTAAACTCAGCGGAAGTATCAAGTGCATTTATTTGTTGCTGC
ATTGCACATTTCATGACTAAATCACTGTTTGATGAGCTATATTCATTTGATTTGTTGTTACATTTGATGCAGCGAAAGAA
ATAGATATACCATCACGAAGGCGCATCATATCATAAAGATTTTCTCTTGTGCATATCTTATAGATATATAAGAAAGAGTT
GAGTGTACTGCACCAACAGAACAGAGACAACGCCTAGCTAGTTGCAAACCGAAAACCACAATGGCAAGCGCAGCAACATC
CGTAGCTATTGTTCTTATTGTGCTCGCCGGCGTGTCCTCCGGCCTCCCTGCCACCTATGCTGACACCAACGTGGCCGCCC
GGATGTGCATGAAGACCATGAACCCCATGCTGTGCATGGTCGTTCTGAAGGTCAACCCAAAGAGCGCCTACGCCTCCACG
GAGCAGGACGTCGGCAGCGTCGCGCTGCAGATCGCGAGTGACACCGCTGAGTACAACGTCGGGGTCATCAACAACCTAAA
TAGGGGCAGCCTAGGCAAGCCCGAGGGTGGCGCGCTGGCGCAATGCCTCTGGGCCTATCAGGACGCCGACAACAATCTCA
AACACAACGCCCGAACCGGTTTCGACCGTGGGGACTACGTCGGTGCGATGGCTCTCGTTTCGGGCGCCCAGATCGTCGGG
GATATCTGCGAGAATGCGTTCAAGATGATCGGCAAGAACTCCCCCGTGTCAAAGATAGATCGCCAGATGACTGAGCGATG
TGGCGTCGCGGCGGAACTCATTGGCCTGCTTACCCACAAGTGATCGATCCTATATAAATCTTGGCTCATATGTGTGCGCT
CCCTTCAATAATTAGTGAGTTGTTCATGTAGCGACATATTTTGGCATTGATGAAATTGTGAATTATCGAGCTTAACAACA
CACAAAACACAAA-CTTACCAAGTA-------------------------------------------------------
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>SNPs
------------------------------------------S--------S----------------------------
----------------S---------------------------------------------S------------S----
-----------S------S-------------------------------------------------------------
-----------------------------------------------------------------------S--S-----
----------------------S---------------------------------------------------------
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-----------------------S--------------------------------------------------------
---------S---S---------S-----------------S---------------------S---------------S
----------------S-----------------------------------------------------S-------SS
--------------------------SSSSSSSSSSS---------------------S---------------------
-----------S--------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---S----------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------S----------S---------------------------------------
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----------------------------------S--S--S--S--------------------------------S---
-------------------------------------------------------------S-S--------S-------
-------------------------------------------------S-------S-S--------------------
-------------------------S--------------------------S--S------S--S------S-------
----------S--S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_143
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-------------------------------------------CTATGCGAGTATGCGGCAAG-----------------
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>reverse_1826
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-----------------------------------------------------------------GCTCCTGTTCTGGGC
AGATT---------------------------------------------------------------------------
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